Wall clock time and date at job start Mon Mar 30 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45748 * 117.94373 * 2 1 4 4 C 1.52920 * 110.48863 * 160.92259 * 3 2 1 5 5 C 1.53352 * 108.67048 * 50.75570 * 4 3 2 6 6 C 1.53062 * 108.42661 * 292.47272 * 5 4 3 7 7 H 1.09003 * 109.39641 * 288.77033 * 6 5 4 8 8 N 1.46498 * 109.40110 * 169.03151 * 6 5 4 9 9 C 1.38826 * 120.00084 * 154.99898 * 8 6 5 10 10 C 1.39798 * 119.58422 * 359.72226 * 9 8 6 11 11 C 1.38595 * 119.48967 * 179.77047 * 10 9 8 12 12 C 1.38391 * 118.68089 * 0.49296 * 11 10 9 13 13 C 1.40553 * 119.14715 * 359.75563 * 12 11 10 14 14 C 1.41317 * 119.78201 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00204 * 353.65975 * 14 13 12 16 16 C 1.40028 * 119.99912 * 173.65760 * 14 13 12 17 17 N 1.30738 * 120.00010 * 6.28890 * 16 14 13 18 18 Si 1.86805 * 119.99913 * 186.28824 * 16 14 13 19 19 H 1.48497 * 109.46802 * 94.98591 * 18 16 14 20 20 H 1.48492 * 109.46974 * 214.98688 * 18 16 14 21 21 H 1.48502 * 109.47108 * 334.98688 * 18 16 14 22 22 N 1.31959 * 119.58512 * 179.97438 * 9 8 6 23 23 C 1.33346 * 117.94868 * 179.74436 * 2 1 3 24 24 O 1.21286 * 118.24542 * 2.22132 * 23 2 1 25 25 H 1.09001 * 109.47403 * 89.99731 * 1 2 3 26 26 H 1.08996 * 109.47153 * 329.99516 * 1 2 3 27 27 H 1.09001 * 109.46830 * 209.99084 * 1 2 3 28 28 H 1.09000 * 109.30780 * 281.23774 * 3 2 1 29 29 H 1.09007 * 109.30073 * 40.82141 * 3 2 1 30 30 H 1.08999 * 109.60672 * 170.51001 * 4 3 2 31 31 H 1.09002 * 109.60533 * 290.83926 * 4 3 2 32 32 H 1.09007 * 109.67051 * 52.20535 * 5 4 3 33 33 H 1.09000 * 109.67328 * 172.69388 * 5 4 3 34 34 H 0.96999 * 120.00207 * 334.99035 * 8 6 5 35 35 H 1.07998 * 120.25303 * 359.97438 * 10 9 8 36 36 H 1.07996 * 120.65855 * 180.24747 * 11 10 9 37 37 H 1.07995 * 120.42774 * 179.77032 * 12 11 10 38 38 H 0.97006 * 120.00303 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5948 1.1260 0.4682 5 6 4.2492 -0.0012 -0.3397 6 6 3.5838 -1.3239 0.0484 7 1 3.8881 -1.5996 1.0581 8 7 4.0012 -2.3714 -0.8869 9 6 3.9823 -3.7022 -0.4921 10 6 3.5689 -4.0324 0.8020 11 6 3.5463 -5.3620 1.1925 12 6 3.9464 -6.3276 0.2854 13 6 4.3565 -5.9319 -0.9994 14 6 4.7672 -6.9067 -1.9364 15 1 4.8636 -7.9392 -1.6345 16 6 5.0492 -6.5340 -3.2564 17 7 5.0524 -5.2706 -3.5925 18 14 5.4209 -7.8421 -4.5372 19 1 4.1767 -8.1818 -5.2732 20 1 6.4354 -7.3266 -5.4912 21 1 5.9461 -9.0578 -3.8651 22 7 4.3594 -4.6392 -1.3413 23 6 2.0900 -1.1779 0.0053 24 8 1.4159 -2.1855 -0.0317 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8899 0.5139 27 1 -0.3633 -0.8901 0.5137 28 1 2.1398 1.6999 -1.0090 29 1 1.6290 1.9707 0.6725 30 1 4.1383 2.0565 0.3043 31 1 3.6101 0.8754 1.5289 32 1 4.1087 0.1816 -1.4051 33 1 5.3144 -0.0449 -0.1124 34 1 4.2906 -2.1352 -1.7820 35 1 3.2665 -3.2577 1.4909 36 1 3.2265 -5.6387 2.1862 37 1 3.9434 -7.3718 0.5611 38 1 5.2474 -5.0124 -4.5070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331253564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:42 Heat of formation + Delta-G solvation = 14.397867 kcal Electronic energy + Delta-G solvation = -21376.641308 eV Core-core repulsion = 18219.251535 eV Total energy + Delta-G solvation = -3157.389774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.40577 -38.03446 -36.32059 -35.43372 -33.40623 -32.34299 -30.30081 -29.42101 -27.51726 -27.05322 -25.27157 -23.74157 -22.33379 -21.27146 -20.40986 -18.62788 -17.38117 -16.55867 -16.39820 -16.05097 -15.84579 -14.78061 -14.70046 -14.29864 -13.96029 -13.70944 -13.47230 -13.24154 -12.74401 -12.58678 -12.46938 -12.06793 -11.93229 -11.73163 -11.42909 -11.28487 -11.15287 -10.93839 -10.88886 -10.48368 -10.31499 -9.85441 -9.81548 -9.27499 -8.73391 -8.60946 -7.80060 -7.41179 -6.45469 -6.24142 -4.35099 2.87433 2.97090 3.09472 3.16820 3.20729 3.37796 3.42191 4.06134 4.11970 4.58699 4.64707 4.74363 4.82814 4.96610 5.23226 5.29689 5.33578 5.39162 5.56833 5.64745 5.67039 5.85701 5.94050 6.05767 6.17859 6.27844 6.49452 6.70697 6.95129 6.97926 7.03403 7.33967 7.55618 7.70754 7.90166 8.02790 8.24235 8.41719 8.50708 8.72572 8.90458 9.21351 10.34090 10.50340 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025302 B = 0.004781 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.356458 B = 5855.511817 C = 6199.549984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.617 5.617 3 C 0.116 3.884 4 C -0.132 4.132 5 C -0.129 4.129 6 C 0.160 3.840 7 H 0.106 0.894 8 N -0.718 5.718 9 C 0.416 3.584 10 C -0.339 4.339 11 C -0.035 4.035 12 C -0.315 4.315 13 C 0.293 3.707 14 C -0.439 4.439 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.720 5.720 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.529 5.529 23 C 0.489 3.511 24 O -0.515 6.515 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 15.410 4.753 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.354 5.354 3 C -0.008 4.008 4 C -0.170 4.170 5 C -0.168 4.168 6 C 0.049 3.951 7 H 0.124 0.876 8 N -0.355 5.355 9 C 0.177 3.823 10 C -0.364 4.364 11 C -0.059 4.059 12 C -0.338 4.338 13 C 0.166 3.834 14 C -0.471 4.471 15 H 0.100 0.900 16 C -0.152 4.152 17 N -0.342 5.342 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.250 5.250 23 C 0.274 3.726 24 O -0.388 6.388 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.234 0.766 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.770 15.229 3.886 15.959 hybrid contribution -0.262 -0.518 -0.090 0.588 sum -3.032 14.711 3.796 15.492 Atomic orbital electron populations 1.21621 0.80295 1.02731 1.01704 1.47434 1.07024 1.06032 1.74872 1.21372 0.93242 0.84881 1.01275 1.21846 0.94666 0.99657 1.00831 1.21937 1.00978 0.92754 1.01093 1.20464 0.88903 0.88793 0.96987 0.87647 1.43839 1.73909 1.02254 1.15477 1.18375 0.89878 0.84951 0.89061 1.20506 1.22658 0.95870 0.97400 1.20576 0.95582 0.92888 0.96891 1.21515 1.17290 0.97685 0.97305 1.18171 0.87299 0.88418 0.89555 1.19543 1.39357 0.94786 0.93424 0.89955 1.26025 0.93871 0.95670 0.99604 1.70159 1.29617 1.16413 1.18015 0.86383 0.78741 0.81654 0.80368 1.19661 1.20324 1.18596 1.68151 1.24838 0.99882 1.32089 1.21382 0.92205 0.82595 0.76432 1.90781 1.65771 1.35338 1.46904 0.93090 0.91800 0.90428 0.91978 0.90982 0.89461 0.90694 0.90679 0.89793 0.76623 0.89597 0.89062 0.88764 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.23 59.85 0.61 1.55 16 2 N -0.62 -8.11 3.21 -182.87 -0.59 -8.70 16 3 C 0.12 1.00 6.38 -4.49 -0.03 0.97 16 4 C -0.13 -1.06 6.02 -26.59 -0.16 -1.22 16 5 C -0.13 -1.45 5.51 -26.52 -0.15 -1.59 16 6 C 0.16 2.61 2.43 -69.31 -0.17 2.45 16 7 H 0.11 1.75 6.43 -51.93 -0.33 1.41 16 8 N -0.72 -15.15 5.12 -55.25 -0.28 -15.43 16 9 C 0.42 10.80 7.21 -155.32 -1.12 9.68 16 10 C -0.34 -8.48 8.28 -38.87 -0.32 -8.80 16 11 C -0.03 -0.87 10.15 -39.39 -0.40 -1.27 16 12 C -0.31 -8.49 9.83 -38.65 -0.38 -8.87 16 13 C 0.29 8.59 6.54 -85.00 -0.56 8.04 16 14 C -0.44 -12.45 9.13 -37.74 -0.34 -12.79 16 15 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 16 C 0.07 1.94 5.49 -17.35 -0.10 1.85 16 17 N -0.72 -19.90 11.48 55.55 0.64 -19.27 16 18 Si 0.90 19.49 29.56 -169.99 -5.03 14.47 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 N -0.53 -15.39 7.92 -10.33 -0.08 -15.47 16 23 C 0.49 8.57 7.12 -11.88 -0.08 8.48 16 24 O -0.51 -11.70 14.36 5.55 0.08 -11.62 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.53 7.86 -51.93 -0.41 0.12 16 27 H 0.08 1.08 7.20 -51.93 -0.37 0.71 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.47 7.93 -51.93 -0.41 0.05 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 32 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 8.27 8.70 -40.82 -0.36 7.91 16 35 H 0.09 1.98 5.97 -52.49 -0.31 1.67 16 36 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 38 H 0.27 6.71 8.29 -40.82 -0.34 6.37 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -35.09 312.44 -8.87 -43.95 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.12 Total: 8.89 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.19 Total: -1.53 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.31 Total: -58.86 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.09 -8.87 -43.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331253564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.350 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds