Wall clock time and date at job start Mon Mar 30 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45748 * 117.94373 * 2 1 4 4 C 1.52920 * 110.48863 * 160.92259 * 3 2 1 5 5 C 1.53352 * 108.67048 * 50.75570 * 4 3 2 6 6 C 1.53062 * 108.42661 * 292.47272 * 5 4 3 7 7 H 1.09003 * 109.39641 * 288.77033 * 6 5 4 8 8 N 1.46498 * 109.40110 * 169.03151 * 6 5 4 9 9 C 1.38826 * 120.00084 * 154.99898 * 8 6 5 10 10 C 1.39798 * 119.58422 * 359.72226 * 9 8 6 11 11 C 1.38595 * 119.48967 * 179.77047 * 10 9 8 12 12 C 1.38391 * 118.68089 * 0.49296 * 11 10 9 13 13 C 1.40553 * 119.14715 * 359.75563 * 12 11 10 14 14 C 1.41317 * 119.78201 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00204 * 353.65975 * 14 13 12 16 16 C 1.40028 * 119.99912 * 173.65760 * 14 13 12 17 17 N 1.30738 * 120.00010 * 6.28890 * 16 14 13 18 18 Si 1.86805 * 119.99913 * 186.28824 * 16 14 13 19 19 H 1.48497 * 109.46802 * 94.98591 * 18 16 14 20 20 H 1.48492 * 109.46974 * 214.98688 * 18 16 14 21 21 H 1.48502 * 109.47108 * 334.98688 * 18 16 14 22 22 N 1.31959 * 119.58512 * 179.97438 * 9 8 6 23 23 C 1.33346 * 117.94868 * 179.74436 * 2 1 3 24 24 O 1.21286 * 118.24542 * 2.22132 * 23 2 1 25 25 H 1.09001 * 109.47403 * 89.99731 * 1 2 3 26 26 H 1.08996 * 109.47153 * 329.99516 * 1 2 3 27 27 H 1.09001 * 109.46830 * 209.99084 * 1 2 3 28 28 H 1.09000 * 109.30780 * 281.23774 * 3 2 1 29 29 H 1.09007 * 109.30073 * 40.82141 * 3 2 1 30 30 H 1.08999 * 109.60672 * 170.51001 * 4 3 2 31 31 H 1.09002 * 109.60533 * 290.83926 * 4 3 2 32 32 H 1.09007 * 109.67051 * 52.20535 * 5 4 3 33 33 H 1.09000 * 109.67328 * 172.69388 * 5 4 3 34 34 H 0.96999 * 120.00207 * 334.99035 * 8 6 5 35 35 H 1.07998 * 120.25303 * 359.97438 * 10 9 8 36 36 H 1.07996 * 120.65855 * 180.24747 * 11 10 9 37 37 H 1.07995 * 120.42774 * 179.77032 * 12 11 10 38 38 H 0.97006 * 120.00303 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5948 1.1260 0.4682 5 6 4.2492 -0.0012 -0.3397 6 6 3.5838 -1.3239 0.0484 7 1 3.8881 -1.5996 1.0581 8 7 4.0012 -2.3714 -0.8869 9 6 3.9823 -3.7022 -0.4921 10 6 3.5689 -4.0324 0.8020 11 6 3.5463 -5.3620 1.1925 12 6 3.9464 -6.3276 0.2854 13 6 4.3565 -5.9319 -0.9994 14 6 4.7672 -6.9067 -1.9364 15 1 4.8636 -7.9392 -1.6345 16 6 5.0492 -6.5340 -3.2564 17 7 5.0524 -5.2706 -3.5925 18 14 5.4209 -7.8421 -4.5372 19 1 4.1767 -8.1818 -5.2732 20 1 6.4354 -7.3266 -5.4912 21 1 5.9461 -9.0578 -3.8651 22 7 4.3594 -4.6392 -1.3413 23 6 2.0900 -1.1779 0.0053 24 8 1.4159 -2.1855 -0.0317 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8899 0.5139 27 1 -0.3633 -0.8901 0.5137 28 1 2.1398 1.6999 -1.0090 29 1 1.6290 1.9707 0.6725 30 1 4.1383 2.0565 0.3043 31 1 3.6101 0.8754 1.5289 32 1 4.1087 0.1816 -1.4051 33 1 5.3144 -0.0449 -0.1124 34 1 4.2906 -2.1352 -1.7820 35 1 3.2665 -3.2577 1.4909 36 1 3.2265 -5.6387 2.1862 37 1 3.9434 -7.3718 0.5611 38 1 5.2474 -5.0124 -4.5070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331253564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:42 Heat of formation + Delta-G solvation = -9.958898 kcal Electronic energy + Delta-G solvation = -21377.697497 eV Core-core repulsion = 18219.251535 eV Total energy + Delta-G solvation = -3158.445962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66061 -39.95420 -37.51521 -36.93810 -35.28335 -33.72860 -32.26047 -31.05355 -29.00226 -28.04745 -27.28536 -24.93299 -23.58500 -22.99666 -22.27495 -19.77007 -19.30496 -18.07147 -17.66650 -17.48131 -17.13990 -16.50970 -16.33641 -15.87540 -15.27341 -15.13663 -14.84407 -14.52243 -14.33474 -14.16299 -13.73865 -13.56595 -13.23456 -13.00571 -12.90353 -12.71933 -12.61085 -12.33189 -12.17496 -12.15687 -11.77377 -11.72074 -11.53773 -11.03756 -10.44397 -9.85048 -9.68605 -9.46897 -8.35253 -8.24312 -6.46648 1.05593 1.30461 1.40409 1.54439 1.55544 1.60671 2.07148 2.25373 2.63834 2.92877 3.61109 3.70043 3.82781 4.01745 4.07076 4.23293 4.37330 4.44224 4.48847 4.60022 4.69086 4.72708 4.84061 4.90955 4.95699 4.98487 5.04104 5.06908 5.11589 5.29231 5.36799 5.52050 5.70325 5.94102 6.02623 6.21128 6.40608 6.53553 6.80256 6.90073 7.17555 7.24351 8.32116 8.51501 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025302 B = 0.004781 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.356458 B = 5855.511817 C = 6199.549984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.608 5.608 3 C 0.104 3.896 4 C -0.123 4.123 5 C -0.121 4.121 6 C 0.154 3.846 7 H 0.101 0.899 8 N -0.715 5.715 9 C 0.403 3.597 10 C -0.343 4.343 11 C -0.037 4.037 12 C -0.342 4.342 13 C 0.257 3.743 14 C -0.474 4.474 15 H 0.087 0.913 16 C 0.025 3.975 17 N -0.755 5.755 18 Si 0.989 3.011 19 H -0.268 1.268 20 H -0.265 1.265 21 H -0.254 1.254 22 N -0.562 5.562 23 C 0.483 3.517 24 O -0.582 6.582 25 H 0.049 0.951 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.396 0.604 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 17.803 4.770 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.342 5.342 3 C -0.017 4.017 4 C -0.161 4.161 5 C -0.159 4.159 6 C 0.044 3.956 7 H 0.118 0.882 8 N -0.350 5.350 9 C 0.164 3.836 10 C -0.368 4.368 11 C -0.061 4.061 12 C -0.365 4.365 13 C 0.130 3.870 14 C -0.506 4.506 15 H 0.105 0.895 16 C -0.196 4.196 17 N -0.377 5.377 18 Si 0.809 3.191 19 H -0.193 1.193 20 H -0.189 1.189 21 H -0.178 1.178 22 N -0.284 5.284 23 C 0.269 3.731 24 O -0.461 6.461 25 H 0.068 0.932 26 H 0.127 0.873 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.232 0.768 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.565 17.738 3.938 18.350 hybrid contribution -0.395 -1.067 -0.020 1.138 sum -2.960 16.670 3.918 17.378 Atomic orbital electron populations 1.21750 0.79481 1.03497 1.01903 1.47540 1.07858 1.06438 1.72338 1.21815 0.93675 0.82869 1.03316 1.21900 0.94222 0.99742 1.00275 1.21958 1.01386 0.90782 1.01811 1.20817 0.89007 0.89905 0.95878 0.88157 1.43996 1.73235 1.01563 1.16203 1.18813 0.89118 0.86402 0.89317 1.20763 1.22045 0.96476 0.97523 1.20976 0.94434 0.92622 0.98071 1.21675 1.18840 0.98687 0.97316 1.18695 0.88183 0.89212 0.90908 1.19919 1.40819 0.95029 0.94820 0.89507 1.26995 0.93032 0.98264 1.01323 1.70255 1.29815 1.18629 1.19021 0.85114 0.78731 0.78310 0.76958 1.19262 1.18915 1.17773 1.68157 1.26477 1.00400 1.33413 1.21501 0.92409 0.83157 0.76026 1.90752 1.66997 1.37851 1.50473 0.93215 0.87313 0.93295 0.90395 0.87443 0.85604 0.90313 0.90521 0.88780 0.76842 0.87895 0.85724 0.87811 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 10.23 127.77 1.31 2.98 16 2 N -0.61 -14.77 3.21 -851.65 -2.73 -17.51 16 3 C 0.10 1.36 6.38 86.49 0.55 1.91 16 4 C -0.12 -1.45 6.02 30.69 0.18 -1.27 16 5 C -0.12 -2.43 5.51 30.73 0.17 -2.26 16 6 C 0.15 4.97 2.43 44.10 0.11 5.08 16 7 H 0.10 3.31 6.43 -2.39 -0.02 3.29 16 8 N -0.71 -30.92 5.12 -328.72 -1.68 -32.61 16 9 C 0.40 21.70 7.21 133.42 0.96 22.66 16 10 C -0.34 -17.55 8.28 22.73 0.19 -17.36 16 11 C -0.04 -1.87 10.15 22.39 0.23 -1.65 16 12 C -0.34 -19.11 9.83 22.87 0.22 -18.88 16 13 C 0.26 15.77 6.54 40.18 0.26 16.03 16 14 C -0.47 -27.88 9.13 23.46 0.21 -27.66 16 15 H 0.09 4.79 7.85 -2.91 -0.02 4.77 16 16 C 0.03 1.37 5.49 85.29 0.47 1.84 16 17 N -0.75 -42.89 11.48 21.84 0.25 -42.64 16 18 Si 0.99 40.50 29.56 68.60 2.03 42.53 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 N -0.56 -34.15 7.92 -186.58 -1.48 -35.63 16 23 C 0.48 16.88 7.12 87.71 0.62 17.51 16 24 O -0.58 -27.40 14.36 -3.05 -0.04 -27.44 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.11 1.39 7.86 -2.39 -0.02 1.37 16 27 H 0.05 1.37 7.20 -2.39 -0.02 1.36 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.76 7.93 -2.38 -0.02 0.74 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.08 1.54 8.10 -2.38 -0.02 1.52 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.40 17.00 8.70 -92.71 -0.81 16.19 16 35 H 0.10 4.81 5.97 -2.91 -0.02 4.79 16 36 H 0.12 5.35 8.06 -2.91 -0.02 5.32 16 37 H 0.10 5.37 8.06 -2.91 -0.02 5.35 16 38 H 0.28 14.08 8.29 -92.70 -0.77 13.31 16 Total: -1.00 -82.05 312.44 2.10 -79.94 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.27 Total: 34.42 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.49 Total: -1.07 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -5.64 Total: -128.38 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.44 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -82.05 2.10 -79.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331253564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.983 kcal (2) G-P(sol) polarization free energy of solvation -82.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds