Wall clock time and date at job start Mon Mar 30 2020 02:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00328 * 2 1 4 4 N 1.46497 * 109.46871 * 124.99777 * 3 2 1 5 5 C 1.46503 * 120.00067 * 264.45476 * 4 3 2 6 6 C 1.50697 * 109.47426 * 270.00364 * 5 4 3 7 7 H 1.08009 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00520 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99390 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00193 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46885 * 90.00667 * 10 8 6 12 12 H 1.48506 * 109.46788 * 210.00210 * 10 8 6 13 13 H 1.48497 * 109.47104 * 330.00101 * 10 8 6 14 14 C 1.34781 * 120.00045 * 84.46378 * 4 3 2 15 15 O 1.21601 * 120.00062 * 185.90798 * 14 4 3 16 16 C 1.47424 * 119.99753 * 5.89926 * 14 4 3 17 17 C 1.39974 * 120.61126 * 54.04552 * 16 14 4 18 18 C 1.38334 * 118.37014 * 180.23673 * 17 16 14 19 19 C 1.38377 * 119.50635 * 359.51102 * 18 17 16 20 20 N 1.31849 * 121.21402 * 0.25353 * 19 18 17 21 21 C 1.32429 * 121.77981 * 359.97438 * 20 19 18 22 22 N 1.38269 * 119.82272 * 179.97438 * 21 20 19 23 23 C 1.46497 * 120.00432 * 354.97487 * 22 21 20 24 24 H 1.08000 * 120.00164 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99760 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00167 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46799 * 4.99947 * 3 2 1 28 28 H 1.08996 * 109.47483 * 245.00108 * 3 2 1 29 29 H 1.08997 * 109.47043 * 30.00302 * 5 4 3 30 30 H 1.08996 * 109.46930 * 150.00684 * 5 4 3 31 31 H 0.97006 * 119.99426 * 179.97438 * 9 8 6 32 32 H 1.08005 * 120.81805 * 359.97438 * 17 16 14 33 33 H 1.07999 * 120.24865 * 179.78314 * 18 17 16 34 34 H 1.07992 * 119.39099 * 180.22843 * 19 18 17 35 35 H 0.97002 * 119.99516 * 174.97802 * 22 21 20 36 36 H 1.09004 * 109.47126 * 300.00237 * 23 22 21 37 37 H 1.09002 * 109.46787 * 60.00172 * 23 22 21 38 38 H 1.08998 * 109.47033 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.6006 1.9743 2.3880 6 6 2.9956 3.4281 2.3541 7 1 3.4906 3.8330 1.4836 8 6 2.7253 4.2415 3.4340 9 7 2.1231 3.7483 4.4941 10 14 3.2157 6.0435 3.3921 11 1 2.1026 6.8463 2.8250 12 1 3.5089 6.5088 4.7716 13 1 4.4254 6.2077 2.5467 14 6 4.2114 0.7655 1.0163 15 8 4.9419 0.6921 1.9857 16 6 4.6575 0.2349 -0.2847 17 6 4.6418 1.0433 -1.4274 18 6 5.0658 0.4965 -2.6252 19 6 5.4989 -0.8173 -2.6593 20 7 5.5107 -1.5613 -1.5708 21 6 5.1116 -1.0899 -0.3994 22 7 5.1405 -1.9061 0.7163 23 6 5.5063 -3.3183 0.5816 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4026 -0.9313 29 1 1.5210 1.8940 2.5148 30 1 3.1019 1.4810 3.2207 31 1 1.9332 4.3204 5.2541 32 1 4.3030 2.0675 -1.3760 33 1 5.0630 1.0918 -3.5263 34 1 5.8330 -1.2412 -3.5947 35 1 4.9185 -1.5436 1.5882 36 1 4.8036 -3.8133 -0.0887 37 1 6.5139 -3.3951 0.1730 38 1 5.4733 -3.7970 1.5603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335963562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:39 Heat of formation + Delta-G solvation = 33.274966 kcal Electronic energy + Delta-G solvation = -21416.995174 eV Core-core repulsion = 18260.423973 eV Total energy + Delta-G solvation = -3156.571201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47568 -38.47143 -35.99670 -35.33638 -33.27259 -32.46925 -31.87347 -30.26310 -27.64871 -26.02945 -25.66668 -24.27902 -22.49664 -22.00766 -20.00742 -18.99309 -17.72913 -16.77640 -16.57779 -16.33019 -15.72185 -15.12088 -14.71293 -14.63945 -14.27647 -14.06534 -13.99268 -13.11207 -13.08062 -12.85083 -12.79669 -12.23031 -12.19675 -11.93500 -11.61070 -11.35112 -11.07423 -10.92007 -10.63770 -10.25241 -10.22637 -9.74552 -9.63157 -9.56129 -9.15096 -8.90748 -8.46622 -7.78045 -7.55258 -6.07815 -4.13144 1.15704 1.57185 2.44955 3.26911 3.28098 3.34924 3.38322 3.42791 3.90860 4.08133 4.41749 4.61697 4.97690 5.02414 5.22018 5.24133 5.26985 5.32962 5.41387 5.42658 5.58280 5.66760 5.71095 5.82219 6.01057 6.04903 6.17525 6.32380 6.58864 6.79932 6.89882 7.03936 7.25763 7.40041 7.43035 7.51405 7.88270 8.18375 8.24385 8.35226 8.82576 8.99119 9.52157 11.00170 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.005452 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.643873 B = 5134.864991 C = 5262.737205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.130 3.870 4 N -0.583 5.583 5 C 0.246 3.754 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.560 3.440 15 O -0.541 6.541 16 C -0.234 4.234 17 C -0.005 4.005 18 C -0.242 4.242 19 C 0.158 3.842 20 N -0.546 5.546 21 C 0.437 3.563 22 N -0.718 5.718 23 C 0.102 3.898 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.419 0.581 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -10.026 -13.626 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C 0.007 3.993 4 N -0.313 5.313 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.347 3.653 15 O -0.420 6.420 16 C -0.245 4.245 17 C -0.031 4.031 18 C -0.265 4.265 19 C -0.001 4.001 20 N -0.265 5.265 21 C 0.199 3.801 22 N -0.352 5.352 23 C -0.042 4.042 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.789 -11.064 -12.911 17.097 hybrid contribution -0.188 2.036 0.350 2.074 sum 1.600 -9.028 -12.561 15.551 Atomic orbital electron populations 1.23793 0.95745 1.01710 1.01000 1.23373 0.96290 0.98957 0.99508 1.20764 0.92957 0.95342 0.90287 1.48168 1.12917 1.54479 1.15715 1.19339 0.95932 0.92146 0.79876 1.21424 1.39117 0.94100 1.02152 0.92420 1.24928 0.95015 0.98934 0.95117 1.69938 1.41547 1.36085 1.05613 0.86497 0.78880 0.84635 0.77426 1.20588 1.21062 1.19867 1.17874 0.82143 0.78298 0.87018 1.90753 1.53981 1.58019 1.39198 1.20396 1.12289 0.95444 0.96382 1.21479 0.91743 0.99185 0.90706 1.21684 1.08570 0.97564 0.98720 1.22474 0.91945 0.90407 0.95278 1.67233 1.22501 1.38551 0.98177 1.18129 0.88287 0.86568 0.87109 1.44408 1.73526 1.09532 1.07683 1.21443 1.00549 0.80756 1.01493 0.88842 0.88243 0.88176 0.89265 0.90321 0.94814 0.93656 0.92672 0.84376 0.84907 0.82854 0.74213 0.92796 0.92503 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.32 29.02 0.42 -2.07 16 2 C -0.16 -2.46 9.80 -36.02 -0.35 -2.81 16 3 C 0.13 2.19 5.62 -5.19 -0.03 2.16 16 4 N -0.58 -12.35 2.45 -177.71 -0.44 -12.79 16 5 C 0.25 6.36 5.18 -5.19 -0.03 6.33 16 6 C -0.53 -14.76 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.56 11.92 6.48 -12.52 -0.08 11.84 16 15 O -0.54 -13.50 15.33 5.28 0.08 -13.42 16 16 C -0.23 -4.09 5.00 -104.65 -0.52 -4.62 16 17 C -0.01 -0.07 7.74 -38.90 -0.30 -0.38 16 18 C -0.24 -2.86 10.09 -39.49 -0.40 -3.26 16 19 C 0.16 1.90 11.16 -17.49 -0.20 1.70 16 20 N -0.55 -8.06 9.55 -12.20 -0.12 -8.18 16 21 C 0.44 7.19 7.48 -155.18 -1.16 6.03 16 22 N -0.72 -11.11 5.74 -67.01 -0.38 -11.50 16 23 C 0.10 1.19 10.71 59.85 0.64 1.83 16 24 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 25 H 0.10 1.29 7.84 -52.49 -0.41 0.87 16 26 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 27 H 0.09 1.52 7.68 -51.93 -0.40 1.12 16 28 H 0.08 1.17 4.49 -51.93 -0.23 0.94 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.14 1.92 7.34 -52.48 -0.39 1.54 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.42 7.09 6.78 -40.82 -0.28 6.81 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -32.72 327.98 -7.64 -40.36 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.01 Total: 6.17 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.43 Total: 3.35 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.20 Total: -57.99 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.72 -7.64 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335963562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.636 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds