Wall clock time and date at job start Mon Mar 30 2020 02:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00328 * 2 1 4 4 N 1.46497 * 109.46871 * 124.99777 * 3 2 1 5 5 C 1.46503 * 120.00067 * 264.45476 * 4 3 2 6 6 C 1.50697 * 109.47426 * 270.00364 * 5 4 3 7 7 H 1.08009 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00520 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99390 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00193 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46885 * 90.00667 * 10 8 6 12 12 H 1.48506 * 109.46788 * 210.00210 * 10 8 6 13 13 H 1.48497 * 109.47104 * 330.00101 * 10 8 6 14 14 C 1.34781 * 120.00045 * 84.46378 * 4 3 2 15 15 O 1.21601 * 120.00062 * 185.90798 * 14 4 3 16 16 C 1.47424 * 119.99753 * 5.89926 * 14 4 3 17 17 C 1.39974 * 120.61126 * 54.04552 * 16 14 4 18 18 C 1.38334 * 118.37014 * 180.23673 * 17 16 14 19 19 C 1.38377 * 119.50635 * 359.51102 * 18 17 16 20 20 N 1.31849 * 121.21402 * 0.25353 * 19 18 17 21 21 C 1.32429 * 121.77981 * 359.97438 * 20 19 18 22 22 N 1.38269 * 119.82272 * 179.97438 * 21 20 19 23 23 C 1.46497 * 120.00432 * 354.97487 * 22 21 20 24 24 H 1.08000 * 120.00164 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99760 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00167 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46799 * 4.99947 * 3 2 1 28 28 H 1.08996 * 109.47483 * 245.00108 * 3 2 1 29 29 H 1.08997 * 109.47043 * 30.00302 * 5 4 3 30 30 H 1.08996 * 109.46930 * 150.00684 * 5 4 3 31 31 H 0.97006 * 119.99426 * 179.97438 * 9 8 6 32 32 H 1.08005 * 120.81805 * 359.97438 * 17 16 14 33 33 H 1.07999 * 120.24865 * 179.78314 * 18 17 16 34 34 H 1.07992 * 119.39099 * 180.22843 * 19 18 17 35 35 H 0.97002 * 119.99516 * 174.97802 * 22 21 20 36 36 H 1.09004 * 109.47126 * 300.00237 * 23 22 21 37 37 H 1.09002 * 109.46787 * 60.00172 * 23 22 21 38 38 H 1.08998 * 109.47033 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.6006 1.9743 2.3880 6 6 2.9956 3.4281 2.3541 7 1 3.4906 3.8330 1.4836 8 6 2.7253 4.2415 3.4340 9 7 2.1231 3.7483 4.4941 10 14 3.2157 6.0435 3.3921 11 1 2.1026 6.8463 2.8250 12 1 3.5089 6.5088 4.7716 13 1 4.4254 6.2077 2.5467 14 6 4.2114 0.7655 1.0163 15 8 4.9419 0.6921 1.9857 16 6 4.6575 0.2349 -0.2847 17 6 4.6418 1.0433 -1.4274 18 6 5.0658 0.4965 -2.6252 19 6 5.4989 -0.8173 -2.6593 20 7 5.5107 -1.5613 -1.5708 21 6 5.1116 -1.0899 -0.3994 22 7 5.1405 -1.9061 0.7163 23 6 5.5063 -3.3183 0.5816 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4026 -0.9313 29 1 1.5210 1.8940 2.5148 30 1 3.1019 1.4810 3.2207 31 1 1.9332 4.3204 5.2541 32 1 4.3030 2.0675 -1.3760 33 1 5.0630 1.0918 -3.5263 34 1 5.8330 -1.2412 -3.5947 35 1 4.9185 -1.5436 1.5882 36 1 4.8036 -3.8133 -0.0887 37 1 6.5139 -3.3951 0.1730 38 1 5.4733 -3.7970 1.5603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335963562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:38 Heat of formation + Delta-G solvation = 12.124691 kcal Electronic energy + Delta-G solvation = -21417.912318 eV Core-core repulsion = 18260.423973 eV Total energy + Delta-G solvation = -3157.488346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74797 -39.95038 -37.42531 -36.56655 -35.18612 -33.80894 -33.37368 -31.37275 -29.53355 -27.09863 -27.05774 -25.86768 -24.12884 -23.13297 -21.33104 -20.42609 -18.86092 -18.62005 -18.15832 -17.66979 -17.35157 -16.44552 -16.16091 -15.96482 -15.65367 -15.55344 -15.05935 -14.56922 -14.32010 -14.17161 -14.10702 -13.95952 -13.37204 -13.32146 -13.06636 -12.91254 -12.84158 -12.59607 -12.28760 -12.24028 -11.70706 -11.27357 -11.07481 -10.75441 -10.65085 -10.38677 -10.26477 -9.52572 -8.69718 -8.23417 -6.38742 0.01749 0.49717 1.25780 1.36767 1.39707 1.49897 1.77523 2.25809 2.32896 2.45788 2.92985 3.06421 3.51576 3.76679 3.95546 4.02478 4.15342 4.20247 4.36082 4.40216 4.47894 4.65852 4.66784 4.76650 4.89744 4.97326 4.99082 5.01889 5.20231 5.30039 5.48229 5.61746 5.64862 5.72472 5.89144 6.03376 6.17493 6.27042 6.63104 6.70928 7.14613 7.22905 7.37911 8.83756 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.005452 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.643873 B = 5134.864991 C = 5262.737205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.130 3.870 4 N -0.587 5.587 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.559 3.441 15 O -0.593 6.593 16 C -0.264 4.264 17 C -0.011 4.011 18 C -0.226 4.226 19 C 0.165 3.835 20 N -0.554 5.554 21 C 0.424 3.576 22 N -0.729 5.729 23 C 0.102 3.898 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.022 0.978 30 H 0.000 1.000 31 H 0.267 0.733 32 H 0.141 0.859 33 H 0.174 0.826 34 H 0.199 0.801 35 H 0.407 0.593 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -9.822 -16.720 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.201 4.201 3 C 0.009 3.991 4 N -0.315 5.315 5 C 0.142 3.858 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.197 1.197 14 C 0.348 3.652 15 O -0.475 6.475 16 C -0.275 4.275 17 C -0.037 4.037 18 C -0.248 4.248 19 C 0.006 3.994 20 N -0.272 5.272 21 C 0.187 3.813 22 N -0.361 5.361 23 C -0.041 4.041 24 H 0.134 0.866 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.040 0.960 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.192 0.808 34 H 0.216 0.784 35 H 0.244 0.756 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.775 -10.887 -16.058 19.482 hybrid contribution -0.208 1.893 1.218 2.261 sum 1.568 -8.994 -14.839 17.423 Atomic orbital electron populations 1.24043 0.95124 1.03085 0.97943 1.23187 0.96821 0.97827 1.02268 1.20942 0.92476 0.96260 0.89463 1.48109 1.13977 1.54110 1.15326 1.18775 0.94416 0.91492 0.81068 1.21691 1.39215 0.95074 1.02334 0.92609 1.25850 0.94765 1.03745 0.94582 1.70061 1.42417 1.37888 1.06296 0.85406 0.78912 0.78945 0.77503 1.18668 1.20738 1.19698 1.18489 0.81346 0.77248 0.88092 1.90701 1.55329 1.60017 1.41470 1.20100 1.15555 0.96756 0.95068 1.21654 0.91989 0.99133 0.90956 1.22087 1.06222 0.97719 0.98739 1.23327 0.89794 0.90418 0.95844 1.67366 1.22683 1.39051 0.98149 1.18276 0.88615 0.86400 0.87981 1.44620 1.73496 1.10828 1.07108 1.21591 1.00586 0.79064 1.02864 0.86596 0.87649 0.88617 0.89754 0.88151 0.95951 0.98148 0.92374 0.84136 0.80843 0.78406 0.75640 0.92133 0.92401 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 14.32 67.78 0.97 -3.20 16 2 C -0.18 -5.46 9.80 25.65 0.25 -5.21 16 3 C 0.13 4.43 5.62 85.64 0.48 4.91 16 4 N -0.59 -25.98 2.45 -834.41 -2.05 -28.03 16 5 C 0.26 14.42 5.18 85.63 0.44 14.86 16 6 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 7 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.56 5.46 84.65 0.46 1.03 16 9 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 10 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 14 C 0.56 24.99 6.48 86.66 0.56 25.55 16 15 O -0.59 -31.68 15.33 -4.03 -0.06 -31.74 16 16 C -0.26 -9.28 5.00 -19.88 -0.10 -9.38 16 17 C -0.01 -0.31 7.74 22.71 0.18 -0.14 16 18 C -0.23 -4.43 10.09 22.33 0.23 -4.20 16 19 C 0.17 3.30 11.16 84.72 0.95 4.25 16 20 N -0.55 -15.15 9.55 -192.52 -1.84 -16.99 16 21 C 0.42 13.86 7.48 133.64 1.00 14.86 16 22 N -0.73 -23.13 5.74 -365.92 -2.10 -25.23 16 23 C 0.10 2.35 10.71 127.77 1.37 3.72 16 24 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 25 H 0.11 2.56 7.84 -2.91 -0.02 2.54 16 26 H 0.10 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.08 2.89 7.68 -2.39 -0.02 2.87 16 28 H 0.10 2.92 4.49 -2.39 -0.01 2.90 16 29 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 30 H 0.00 0.03 7.35 -2.39 -0.02 0.01 16 31 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 32 H 0.14 3.73 7.34 -2.91 -0.02 3.70 16 33 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.41 14.70 6.78 -92.71 -0.63 14.08 16 36 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.73 327.98 3.72 -71.00 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.44 Total: 24.14 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 7.03 Total: 15.91 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -5.70 Total: -126.00 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.06 Total: -31.74 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.73 3.72 -71.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335963562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.128 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds