Wall clock time and date at job start Mon Mar 30 2020 02:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35741 * 117.00348 * 2 1 4 4 C 1.39282 * 120.84330 * 0.02562 * 3 2 1 5 5 C 1.37953 * 119.09159 * 179.97438 * 4 3 2 6 6 N 1.31974 * 120.82628 * 359.97438 * 5 4 3 7 7 C 1.31944 * 121.85935 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.58841 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47086 * 274.99861 * 8 7 6 10 10 C 1.46904 * 110.99779 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46858 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00128 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99895 * 11 10 9 14 14 N 8.64331 * 130.43301 * 324.53485 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99851 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.37993 * 120.82629 * 0.26757 * 7 6 5 25 25 H 1.08998 * 109.47721 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46899 * 299.99367 * 1 2 3 27 27 H 1.08998 * 109.47512 * 59.99218 * 1 2 3 28 28 H 1.07996 * 120.45765 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.58710 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47324 * 154.99680 * 8 7 6 31 31 H 1.09004 * 109.47052 * 34.99839 * 8 7 6 32 32 H 1.00897 * 111.00127 * 56.04185 * 9 8 7 33 33 H 1.08997 * 109.46933 * 59.99775 * 10 9 8 34 34 H 1.08996 * 109.47325 * 299.99917 * 10 9 8 35 35 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 36 36 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.45700 * 179.70757 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9677 3.5980 0.0011 6 7 3.2865 3.6457 0.0016 7 6 4.0230 2.5510 0.0011 8 6 5.5258 2.6651 0.0011 9 7 6.0048 2.8231 -1.3786 10 6 7.4688 2.9383 -1.4175 11 6 7.9292 3.1004 -2.8675 12 1 7.5421 2.2758 -3.4661 13 6 7.4239 4.3749 -3.4032 14 7 7.0346 5.3584 -3.8172 15 6 9.4583 3.0953 -2.9207 16 6 9.9110 3.1313 -4.3577 17 1 9.1812 3.1559 -5.1534 18 6 11.2571 3.1393 -4.6564 19 7 11.6522 3.1762 -5.9102 20 14 12.5194 3.0974 -3.2801 21 1 12.8529 1.6869 -2.9570 22 1 13.7482 3.8098 -3.7137 23 1 11.9607 3.7624 -2.0755 24 6 3.4346 1.3028 -0.0055 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2245 2.3567 0.0014 29 1 1.4008 4.5173 0.0019 30 1 5.9586 1.7637 0.4351 31 1 5.8243 3.5318 0.5909 32 1 5.5681 3.6158 -1.8245 33 1 7.9154 2.0391 -0.9932 34 1 7.7805 3.8070 -0.8377 35 1 9.8354 2.1907 -2.4435 36 1 9.8430 3.9700 -2.3965 37 1 12.5991 3.1815 -6.1203 38 1 4.0432 0.4107 -0.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356622907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:49 Heat of formation + Delta-G solvation = 17.995783 kcal Electronic energy + Delta-G solvation = -19728.921753 eV Core-core repulsion = 16571.687997 eV Total energy + Delta-G solvation = -3157.233756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89157 -38.72354 -37.45169 -35.31119 -33.69523 -32.30165 -31.77929 -30.98750 -28.26679 -27.32975 -25.17842 -23.73033 -22.63899 -21.82047 -21.28918 -18.35441 -17.31104 -16.93726 -16.73845 -16.24271 -16.00107 -15.81856 -15.06955 -14.90005 -14.38757 -14.11429 -13.79274 -13.55796 -13.27732 -13.10527 -12.75140 -12.41820 -12.28136 -12.12307 -11.94645 -11.90893 -11.48147 -11.36706 -11.13420 -10.82155 -10.40695 -9.96441 -9.81128 -9.70086 -9.34649 -9.29906 -9.13609 -8.59828 -8.41991 -6.08646 -4.09197 0.83130 1.11708 2.74712 3.27633 3.36366 3.37263 3.47950 3.57925 3.62558 4.03264 4.32656 4.40126 4.46720 4.57885 4.68009 4.70206 4.73519 4.88962 4.96121 5.03896 5.23669 5.25978 5.39306 5.52612 5.54408 5.62692 5.73243 5.81955 6.01331 6.17749 6.26698 6.37998 6.86235 6.93566 6.95807 7.15986 7.33136 7.65746 7.83211 8.37640 8.45090 8.95220 9.51120 11.04540 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030860 B = 0.003008 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.109466 B = 9306.019233 C = 9502.721971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.165 3.835 4 C -0.266 4.266 5 C 0.138 3.862 6 N -0.503 5.503 7 C 0.168 3.832 8 C 0.107 3.893 9 N -0.685 5.685 10 C 0.065 3.935 11 C 0.017 3.983 12 H 0.117 0.883 13 C 0.237 3.763 14 N -0.466 5.466 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.878 3.122 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.182 4.182 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.157 0.843 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.346 0.654 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.899 -6.580 16.864 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.112 3.888 4 C -0.287 4.287 5 C -0.020 4.020 6 N -0.217 5.217 7 C 0.032 3.968 8 C -0.022 4.022 9 N -0.317 5.317 10 C -0.065 4.065 11 C -0.005 4.005 12 H 0.134 0.866 13 C -0.080 4.080 14 N -0.143 5.143 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.705 3.295 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.203 4.203 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.174 0.826 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.837 -5.193 15.993 26.776 hybrid contribution 0.243 -0.185 0.911 0.961 sum -20.594 -5.378 16.905 27.181 Atomic orbital electron populations 1.23130 0.77835 1.04356 1.01615 1.86078 1.21840 1.26379 1.87862 1.19344 0.92490 0.84513 0.92496 1.22196 1.01428 0.93369 1.11693 1.22515 0.90017 0.96981 0.92448 1.67551 1.07051 1.32109 1.14950 1.20994 0.96311 0.87412 0.92107 1.20817 0.87658 1.02471 0.91254 1.60603 1.06827 1.48865 1.15376 1.22137 0.86538 1.01827 0.96002 1.19060 0.98930 0.88457 0.94010 0.86564 1.29138 0.91609 0.94536 0.92742 1.81041 1.11488 1.12426 1.09354 1.19631 0.87586 0.97879 0.99204 1.21041 0.93094 1.51809 0.90602 0.90788 1.25001 0.98508 0.94293 0.95378 1.69908 1.15892 1.50216 1.17551 0.86808 0.81175 0.78603 0.82911 1.19982 1.21378 1.18850 1.21300 0.91760 0.99938 1.07313 0.87854 0.92430 0.92304 0.84517 0.82552 0.88846 0.92896 0.83595 0.88780 0.94335 0.94629 0.95785 0.92581 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.84 101.05 0.99 1.13 16 2 O -0.31 -2.91 10.51 -18.93 -0.20 -3.11 16 3 C 0.16 1.70 6.74 -38.82 -0.26 1.44 16 4 C -0.27 -2.37 9.11 -39.30 -0.36 -2.72 16 5 C 0.14 1.38 11.17 -17.59 -0.20 1.18 16 6 N -0.50 -6.32 10.27 -9.55 -0.10 -6.42 16 7 C 0.17 2.01 6.29 -82.63 -0.52 1.49 16 8 C 0.11 1.20 5.99 -4.97 -0.03 1.18 16 9 N -0.68 -9.11 6.49 -115.05 -0.75 -9.86 16 10 C 0.06 0.89 5.12 -3.82 -0.02 0.87 16 11 C 0.02 0.31 2.42 -93.41 -0.23 0.08 16 12 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 13 C 0.24 4.86 12.98 -20.76 -0.27 4.59 16 14 N -0.47 -10.48 18.54 42.15 0.78 -9.69 16 15 C 0.00 -0.09 3.49 -27.88 -0.10 -0.18 16 16 C -0.53 -14.30 9.15 -34.44 -0.32 -14.61 16 17 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 20 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 24 C -0.18 -2.00 9.68 -39.30 -0.38 -2.39 16 25 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.23 7.71 -51.92 -0.40 -0.17 16 27 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 28 H 0.14 0.82 6.47 -52.49 -0.34 0.48 16 29 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.35 5.15 7.80 -39.29 -0.31 4.84 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.70 7.58 -51.93 -0.39 0.31 16 36 H 0.02 0.52 7.19 -51.93 -0.37 0.15 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 38 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -33.25 330.90 -6.12 -39.37 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.17 Total: 1.27 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.78 Total: -6.06 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.71 Total: -52.47 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.20 Total: -3.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.25 -6.12 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356622907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.362 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds