Wall clock time and date at job start Mon Mar 30 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35741 * 117.00348 * 2 1 4 4 C 1.39282 * 120.84330 * 0.02562 * 3 2 1 5 5 C 1.37953 * 119.09159 * 179.97438 * 4 3 2 6 6 N 1.31974 * 120.82628 * 359.97438 * 5 4 3 7 7 C 1.31944 * 121.85935 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.58841 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47086 * 274.99861 * 8 7 6 10 10 C 1.46904 * 110.99779 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46858 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00128 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99895 * 11 10 9 14 14 N 8.64331 * 130.43301 * 324.53485 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99851 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.37993 * 120.82629 * 0.26757 * 7 6 5 25 25 H 1.08998 * 109.47721 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46899 * 299.99367 * 1 2 3 27 27 H 1.08998 * 109.47512 * 59.99218 * 1 2 3 28 28 H 1.07996 * 120.45765 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.58710 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47324 * 154.99680 * 8 7 6 31 31 H 1.09004 * 109.47052 * 34.99839 * 8 7 6 32 32 H 1.00897 * 111.00127 * 56.04185 * 9 8 7 33 33 H 1.08997 * 109.46933 * 59.99775 * 10 9 8 34 34 H 1.08996 * 109.47325 * 299.99917 * 10 9 8 35 35 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 36 36 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.45700 * 179.70757 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9677 3.5980 0.0011 6 7 3.2865 3.6457 0.0016 7 6 4.0230 2.5510 0.0011 8 6 5.5258 2.6651 0.0011 9 7 6.0048 2.8231 -1.3786 10 6 7.4688 2.9383 -1.4175 11 6 7.9292 3.1004 -2.8675 12 1 7.5421 2.2758 -3.4661 13 6 7.4239 4.3749 -3.4032 14 7 7.0346 5.3584 -3.8172 15 6 9.4583 3.0953 -2.9207 16 6 9.9110 3.1313 -4.3577 17 1 9.1812 3.1559 -5.1534 18 6 11.2571 3.1393 -4.6564 19 7 11.6522 3.1762 -5.9102 20 14 12.5194 3.0974 -3.2801 21 1 12.8529 1.6869 -2.9570 22 1 13.7482 3.8098 -3.7137 23 1 11.9607 3.7624 -2.0755 24 6 3.4346 1.3028 -0.0055 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2245 2.3567 0.0014 29 1 1.4008 4.5173 0.0019 30 1 5.9586 1.7637 0.4351 31 1 5.8243 3.5318 0.5909 32 1 5.5681 3.6158 -1.8245 33 1 7.9154 2.0391 -0.9932 34 1 7.7805 3.8070 -0.8377 35 1 9.8354 2.1907 -2.4435 36 1 9.8430 3.9700 -2.3965 37 1 12.5991 3.1815 -6.1203 38 1 4.0432 0.4107 -0.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356622907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:48 Heat of formation + Delta-G solvation = -6.248250 kcal Electronic energy + Delta-G solvation = -19729.973053 eV Core-core repulsion = 16571.687997 eV Total energy + Delta-G solvation = -3158.285056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60570 -39.45494 -38.78956 -36.62448 -35.42107 -33.87983 -32.54296 -32.13119 -29.28474 -28.33164 -26.32073 -24.46989 -23.83188 -23.32973 -22.36202 -19.10344 -18.86030 -18.32048 -17.95721 -16.97637 -16.83055 -16.63226 -16.45178 -15.76313 -15.58251 -15.24848 -14.86703 -14.72532 -14.52834 -14.32319 -14.17477 -13.94087 -13.60534 -13.21478 -13.08815 -12.90496 -12.54127 -12.47495 -12.41187 -12.14546 -12.08978 -11.65051 -11.56570 -11.28142 -10.71049 -10.52939 -10.11140 -9.85921 -9.41138 -8.22975 -6.28702 0.07942 0.36023 1.44860 1.47812 1.58182 1.93975 1.95990 2.17350 2.43238 2.69531 3.12995 3.23866 3.25050 3.49730 3.69939 3.90937 4.07297 4.20556 4.22478 4.34981 4.36839 4.42273 4.49892 4.61003 4.72323 4.76623 4.83770 4.89808 4.96579 4.98083 5.09209 5.26749 5.48562 5.54568 5.65173 5.97616 6.20859 6.23861 6.28188 6.74998 6.81553 7.06427 7.35690 8.94195 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030860 B = 0.003008 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.109466 B = 9306.019233 C = 9502.721971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.156 3.844 4 C -0.258 4.258 5 C 0.125 3.875 6 N -0.534 5.534 7 C 0.153 3.847 8 C 0.110 3.890 9 N -0.689 5.689 10 C 0.075 3.925 11 C 0.023 3.977 12 H 0.119 0.881 13 C 0.247 3.753 14 N -0.508 5.508 15 C -0.002 4.002 16 C -0.532 4.532 17 H 0.026 0.974 18 C 0.000 4.000 19 N -0.956 5.956 20 Si 0.951 3.049 21 H -0.255 1.255 22 H -0.297 1.297 23 H -0.236 1.236 24 C -0.194 4.194 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.166 0.834 29 H 0.180 0.820 30 H 0.117 0.883 31 H 0.052 0.948 32 H 0.333 0.667 33 H 0.125 0.875 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.599 -7.733 19.807 30.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.102 3.898 4 C -0.279 4.279 5 C -0.031 4.031 6 N -0.248 5.248 7 C 0.016 3.984 8 C -0.019 4.019 9 N -0.320 5.320 10 C -0.054 4.054 11 C 0.001 3.999 12 H 0.137 0.863 13 C -0.069 4.069 14 N -0.186 5.186 15 C -0.041 4.041 16 C -0.570 4.570 17 H 0.045 0.955 18 C -0.196 4.196 19 N -0.597 5.597 20 Si 0.774 3.226 21 H -0.180 1.180 22 H -0.224 1.224 23 H -0.158 1.158 24 C -0.215 4.215 25 H 0.140 0.860 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.184 0.816 29 H 0.197 0.803 30 H 0.135 0.865 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.575 -6.364 18.965 29.422 hybrid contribution 0.287 0.141 -0.089 0.331 sum -21.289 -6.224 18.877 29.125 Atomic orbital electron populations 1.23444 0.75752 1.06021 1.02654 1.86062 1.24044 1.26039 1.87678 1.19524 0.92614 0.85358 0.92315 1.22475 1.02867 0.92439 1.10127 1.22976 0.89587 0.98477 0.92101 1.67535 1.08373 1.32818 1.16099 1.21087 0.96607 0.87677 0.92987 1.20892 0.87647 1.03470 0.89869 1.60605 1.06371 1.48141 1.16836 1.22070 0.87061 1.03599 0.92693 1.19147 0.96830 0.86976 0.96946 0.86303 1.29800 0.90683 0.94748 0.91684 1.81032 1.12800 1.13923 1.10823 1.19586 0.89805 0.99320 0.95354 1.21424 0.92333 1.50494 0.92727 0.95521 1.26085 1.01303 0.94038 0.98164 1.70099 1.16375 1.52669 1.20552 0.85647 0.77346 0.79692 0.79921 1.17982 1.22369 1.15845 1.21441 0.92574 0.99913 1.07609 0.86048 0.91033 0.91534 0.81617 0.80341 0.86527 0.93030 0.85015 0.85710 0.93738 0.91420 0.95403 0.92689 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.84 113.37 1.12 1.24 16 2 O -0.33 -5.57 10.51 -90.65 -0.95 -6.52 16 3 C 0.16 2.98 6.74 22.76 0.15 3.13 16 4 C -0.26 -4.10 9.11 22.45 0.20 -3.90 16 5 C 0.13 2.35 11.17 84.60 0.95 3.29 16 6 N -0.53 -13.02 10.27 -184.12 -1.89 -14.91 16 7 C 0.15 3.48 6.29 42.48 0.27 3.75 16 8 C 0.11 2.26 5.99 85.56 0.51 2.78 16 9 N -0.69 -17.13 6.49 -517.92 -3.36 -20.49 16 10 C 0.08 1.86 5.12 86.30 0.44 2.30 16 11 C 0.02 0.78 2.42 -12.60 -0.03 0.75 16 12 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 13 C 0.25 10.14 12.98 89.45 1.16 11.30 16 14 N -0.51 -23.23 18.54 20.00 0.37 -22.86 16 15 C 0.00 -0.07 3.49 29.85 0.10 0.04 16 16 C -0.53 -29.04 9.15 25.60 0.23 -28.81 16 17 H 0.03 1.65 7.84 -2.91 -0.02 1.63 16 18 C 0.00 0.03 5.47 84.66 0.46 0.49 16 19 N -0.96 -59.85 13.96 21.45 0.30 -59.55 16 20 Si 0.95 41.60 27.47 68.60 1.88 43.49 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 22 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 24 C -0.19 -4.06 9.68 22.45 0.22 -3.84 16 25 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 0.37 7.71 -2.38 -0.02 0.35 16 27 H 0.07 0.43 7.71 -2.39 -0.02 0.41 16 28 H 0.17 1.51 6.47 -2.91 -0.02 1.49 16 29 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.12 1.80 8.04 -2.39 -0.02 1.78 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.33 9.71 7.80 -89.70 -0.70 9.01 16 33 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 2.37 7.58 -2.38 -0.02 2.35 16 36 H 0.03 1.12 7.19 -2.39 -0.02 1.10 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -74.78 330.90 2.46 -72.32 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.32 Total: 16.01 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.79 Total: -7.49 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -4.58 Total: -117.81 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.95 Total: -6.52 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.49 kcal Total: -74.78 2.46 -72.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356622907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.076 kcal (2) G-P(sol) polarization free energy of solvation -74.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds