Wall clock time and date at job start Mon Mar 30 2020 01:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47406 * 2 1 4 4 C 1.50703 * 109.47027 * 240.00273 * 2 1 3 5 5 H 1.08005 * 119.99848 * 239.99539 * 4 2 1 6 6 C 1.37872 * 120.00081 * 59.99947 * 4 2 1 7 7 N 1.31520 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47383 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46968 * 300.00231 * 8 6 4 11 11 H 1.48497 * 109.47063 * 59.99770 * 8 6 4 12 12 C 1.50695 * 109.47352 * 120.00307 * 2 1 3 13 13 O 1.21285 * 120.00368 * 120.00258 * 12 2 1 14 14 N 1.34784 * 119.99995 * 299.99980 * 12 2 1 15 15 C 1.39946 * 120.00095 * 175.31557 * 14 12 2 16 16 C 1.38898 * 120.60875 * 214.67948 * 15 14 12 17 17 N 1.31545 * 120.57352 * 179.76091 * 16 15 14 18 18 C 1.32484 * 122.29020 * 0.64333 * 17 16 15 19 19 C 1.37844 * 120.38823 * 359.53780 * 18 17 16 20 20 C 1.38891 * 119.29777 * 0.14866 * 19 18 17 21 21 C 1.50494 * 122.13302 * 180.30762 * 19 18 17 22 22 N 1.46659 * 110.48243 * 342.67365 * 21 19 18 23 23 C 1.47165 * 110.20463 * 52.26957 * 22 21 19 24 24 C 1.50844 * 118.22673 * 179.42273 * 18 17 16 25 25 H 1.09005 * 109.46740 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46859 * 299.99372 * 1 2 3 27 27 H 1.08994 * 109.47093 * 59.99782 * 1 2 3 28 28 H 0.97001 * 119.99687 * 180.02562 * 7 6 4 29 29 H 0.96997 * 119.99607 * 355.31288 * 14 12 2 30 30 H 1.08005 * 119.71382 * 0.05978 * 16 15 14 31 31 H 1.07995 * 120.66961 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.30195 * 102.98287 * 21 19 18 33 33 H 1.09009 * 109.30406 * 222.56660 * 21 19 18 34 34 H 1.00905 * 111.00133 * 288.88447 * 22 21 19 35 35 H 1.09000 * 109.62014 * 48.44499 * 23 22 21 36 36 H 1.08994 * 109.62332 * 169.01099 * 23 22 21 37 37 H 1.08991 * 109.38790 * 42.88784 * 24 18 17 38 38 H 1.09004 * 109.30334 * 283.13481 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 1.8268 -0.4197 -5.2205 10 1 3.8075 -1.1188 -4.0078 11 1 1.8281 -2.5196 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.0904 -0.9639 3.5955 16 6 1.2718 -0.9976 4.7171 17 7 1.6309 -1.6727 5.7875 18 6 2.7770 -2.3337 5.8559 19 6 3.6420 -2.3425 4.7827 20 6 3.3009 -1.6482 3.6291 21 6 4.9503 -3.0855 4.8151 22 7 5.3265 -3.4022 6.1968 23 6 4.2166 -4.0832 6.8824 24 6 3.1028 -3.0665 7.1335 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.7081 1.1609 -3.4844 29 1 1.2067 0.5762 2.5447 30 1 0.3301 -0.4688 4.7087 31 1 3.9622 -1.6398 2.7754 32 1 4.8534 -4.0107 4.2470 33 1 5.7274 -2.4668 4.3660 34 1 5.6037 -2.5702 6.6959 35 1 3.8400 -4.8914 6.2555 36 1 4.5657 -4.4859 7.8332 37 1 2.2131 -3.5852 7.4901 38 1 3.4302 -2.3497 7.8866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357444041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:08 Heat of formation + Delta-G solvation = -6.937267 kcal Electronic energy + Delta-G solvation = -20875.919795 eV Core-core repulsion = 17717.604860 eV Total energy + Delta-G solvation = -3158.314934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87505 -39.16664 -37.13672 -34.54844 -33.93356 -32.71097 -30.91689 -30.60957 -28.77063 -25.26161 -25.03531 -24.07818 -22.71625 -22.52564 -20.64338 -19.60518 -17.49391 -16.93588 -16.40340 -16.17217 -15.64629 -15.08253 -14.98287 -14.72358 -14.24904 -14.08220 -13.92465 -13.27745 -13.05648 -12.72945 -12.63898 -12.59254 -12.27107 -11.85103 -11.64209 -11.20816 -11.09272 -10.86829 -10.78531 -10.50104 -10.27183 -10.07897 -9.70751 -9.23802 -9.11835 -8.78943 -8.68197 -8.43978 -7.95667 -6.13255 -4.17630 1.10755 1.38838 3.30104 3.33453 3.34255 3.37565 3.51217 3.86232 4.00906 4.32784 4.39551 4.66406 4.72578 4.92599 5.02029 5.03786 5.20373 5.30363 5.38791 5.51398 5.59629 5.66145 5.72292 5.79829 5.98524 6.15316 6.31815 6.48635 6.50552 6.67930 6.69033 6.77654 7.03362 7.10463 7.31455 7.61176 7.78333 7.96201 8.02060 8.20603 8.86470 8.91708 9.48510 10.94278 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031295 B = 0.004035 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.498953 B = 6937.734014 C = 7646.490229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.033 3.967 3 H 0.057 0.943 4 C -0.506 4.506 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.903 3.097 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.523 6.523 14 N -0.683 5.683 15 C 0.115 3.885 16 C 0.070 3.930 17 N -0.468 5.468 18 C 0.093 3.907 19 C -0.148 4.148 20 C -0.081 4.081 21 C 0.100 3.900 22 N -0.678 5.678 23 C 0.054 3.946 24 C -0.098 4.098 25 H 0.032 0.968 26 H 0.013 0.987 27 H 0.096 0.904 28 H 0.263 0.737 29 H 0.410 0.590 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.343 0.657 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -2.976 16.892 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.545 4.545 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.730 3.270 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.397 6.397 14 N -0.329 5.329 15 C 0.016 3.984 16 C -0.092 4.092 17 N -0.176 5.176 18 C -0.044 4.044 19 C -0.152 4.152 20 C -0.109 4.109 21 C -0.031 4.031 22 N -0.305 5.305 23 C -0.076 4.076 24 C -0.138 4.138 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.246 0.754 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.469 -4.185 17.114 17.957 hybrid contribution -0.358 0.921 -1.506 1.801 sum 3.111 -3.264 15.609 16.247 Atomic orbital electron populations 1.21775 0.96155 1.00076 1.01235 1.18914 0.94390 0.96932 0.88587 0.92516 1.21058 1.31531 1.13038 0.88856 0.90746 1.24941 0.94946 0.95002 0.99172 1.69852 1.36728 1.22952 1.23886 0.86474 0.79315 0.79721 0.81472 1.21275 1.20100 1.20137 1.22408 0.78151 0.84302 0.84050 1.90527 1.36407 1.26538 1.86206 1.44074 1.57871 1.26586 1.04360 1.18965 0.93706 0.96768 0.88942 1.22503 0.98807 0.98948 0.88944 1.67384 1.16637 1.07086 1.26481 1.20752 0.90639 0.97617 0.95406 1.21208 0.99559 1.00235 0.94238 1.21742 0.95183 0.96128 0.97887 1.20914 0.91737 0.99456 0.90962 1.61031 1.36483 1.30022 1.02938 1.22140 0.89310 0.96325 0.99823 1.21025 1.00875 0.98243 0.93644 0.94840 0.96753 0.88522 0.92730 0.75362 0.82677 0.82976 0.89089 0.89284 0.84012 0.90410 0.89610 0.89553 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16 2 C 0.03 0.78 2.64 -92.92 -0.24 0.53 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.51 -13.83 8.37 -34.44 -0.29 -14.12 16 5 H 0.07 2.14 6.75 -52.48 -0.35 1.78 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.52 11.20 7.01 -10.98 -0.08 11.13 16 13 O -0.52 -12.72 12.94 5.55 0.07 -12.65 16 14 N -0.68 -11.54 5.21 -9.80 -0.05 -11.59 16 15 C 0.11 1.87 6.32 -83.59 -0.53 1.35 16 16 C 0.07 1.03 11.13 -17.43 -0.19 0.84 16 17 N -0.47 -7.01 10.21 -9.29 -0.09 -7.11 16 18 C 0.09 1.28 6.67 -82.38 -0.55 0.73 16 19 C -0.15 -2.08 5.79 -104.62 -0.61 -2.69 16 20 C -0.08 -1.33 8.44 -39.02 -0.33 -1.66 16 21 C 0.10 1.16 6.34 -5.21 -0.03 1.12 16 22 N -0.68 -6.63 6.97 -115.22 -0.80 -7.43 16 23 C 0.05 0.48 6.61 -3.74 -0.02 0.46 16 24 C -0.10 -0.99 6.06 -27.88 -0.17 -1.16 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.01 0.25 7.68 -51.93 -0.40 -0.15 16 27 H 0.10 2.35 6.07 -51.93 -0.32 2.03 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.41 5.70 8.39 -40.82 -0.34 5.35 16 30 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.15 2.76 6.31 -52.49 -0.33 2.43 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.34 2.96 8.74 -39.29 -0.34 2.62 16 35 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -30.42 312.41 -8.39 -38.81 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.02 Total: 7.31 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.81 Total: -4.57 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.32 Total: -49.88 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.42 -8.39 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357444041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.877 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds