Wall clock time and date at job start Mon Mar 30 2020 01:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47406 * 2 1 4 4 C 1.50703 * 109.47027 * 240.00273 * 2 1 3 5 5 H 1.08005 * 119.99848 * 239.99539 * 4 2 1 6 6 C 1.37872 * 120.00081 * 59.99947 * 4 2 1 7 7 N 1.31520 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47383 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46968 * 300.00231 * 8 6 4 11 11 H 1.48497 * 109.47063 * 59.99770 * 8 6 4 12 12 C 1.50695 * 109.47352 * 120.00307 * 2 1 3 13 13 O 1.21285 * 120.00368 * 120.00258 * 12 2 1 14 14 N 1.34784 * 119.99995 * 299.99980 * 12 2 1 15 15 C 1.39946 * 120.00095 * 175.31557 * 14 12 2 16 16 C 1.38898 * 120.60875 * 214.67948 * 15 14 12 17 17 N 1.31545 * 120.57352 * 179.76091 * 16 15 14 18 18 C 1.32484 * 122.29020 * 0.64333 * 17 16 15 19 19 C 1.37844 * 120.38823 * 359.53780 * 18 17 16 20 20 C 1.38891 * 119.29777 * 0.14866 * 19 18 17 21 21 C 1.50494 * 122.13302 * 180.30762 * 19 18 17 22 22 N 1.46659 * 110.48243 * 342.67365 * 21 19 18 23 23 C 1.47165 * 110.20463 * 52.26957 * 22 21 19 24 24 C 1.50844 * 118.22673 * 179.42273 * 18 17 16 25 25 H 1.09005 * 109.46740 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46859 * 299.99372 * 1 2 3 27 27 H 1.08994 * 109.47093 * 59.99782 * 1 2 3 28 28 H 0.97001 * 119.99687 * 180.02562 * 7 6 4 29 29 H 0.96997 * 119.99607 * 355.31288 * 14 12 2 30 30 H 1.08005 * 119.71382 * 0.05978 * 16 15 14 31 31 H 1.07995 * 120.66961 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.30195 * 102.98287 * 21 19 18 33 33 H 1.09009 * 109.30406 * 222.56660 * 21 19 18 34 34 H 1.00905 * 111.00133 * 288.88447 * 22 21 19 35 35 H 1.09000 * 109.62014 * 48.44499 * 23 22 21 36 36 H 1.08994 * 109.62332 * 169.01099 * 23 22 21 37 37 H 1.08991 * 109.38790 * 42.88784 * 24 18 17 38 38 H 1.09004 * 109.30334 * 283.13481 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 1.8268 -0.4197 -5.2205 10 1 3.8075 -1.1188 -4.0078 11 1 1.8281 -2.5196 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.0904 -0.9639 3.5955 16 6 1.2718 -0.9976 4.7171 17 7 1.6309 -1.6727 5.7875 18 6 2.7770 -2.3337 5.8559 19 6 3.6420 -2.3425 4.7827 20 6 3.3009 -1.6482 3.6291 21 6 4.9503 -3.0855 4.8151 22 7 5.3265 -3.4022 6.1968 23 6 4.2166 -4.0832 6.8824 24 6 3.1028 -3.0665 7.1335 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.7081 1.1609 -3.4844 29 1 1.2067 0.5762 2.5447 30 1 0.3301 -0.4688 4.7087 31 1 3.9622 -1.6398 2.7754 32 1 4.8534 -4.0107 4.2470 33 1 5.7274 -2.4668 4.3660 34 1 5.6037 -2.5702 6.6959 35 1 3.8400 -4.8914 6.2555 36 1 4.5657 -4.4859 7.8332 37 1 2.2131 -3.5852 7.4901 38 1 3.4302 -2.3497 7.8866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357444041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:07 Heat of formation + Delta-G solvation = -28.757761 kcal Electronic energy + Delta-G solvation = -20876.866003 eV Core-core repulsion = 17717.604860 eV Total energy + Delta-G solvation = -3159.261142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08568 -40.64172 -38.17415 -35.99841 -35.83173 -33.87208 -32.59102 -31.74845 -29.98842 -27.24786 -26.10586 -25.35080 -24.01883 -23.73718 -21.79600 -21.13651 -18.92641 -18.38095 -17.81143 -17.50584 -17.19481 -16.55557 -16.30313 -15.85688 -15.71788 -15.27439 -14.92905 -14.89342 -14.48738 -14.20871 -13.78618 -13.63842 -13.50998 -13.22188 -12.99722 -12.77753 -12.68280 -12.61514 -12.28026 -12.05285 -11.99094 -11.68524 -11.11813 -10.99643 -10.60788 -10.45047 -10.17591 -9.57310 -9.22133 -8.18882 -6.29603 -0.05700 0.16580 1.40759 1.41453 1.49885 1.71169 2.07820 2.43591 2.67191 3.11602 3.13823 3.42237 3.60312 3.74950 3.85453 3.97054 4.16310 4.23756 4.34991 4.46177 4.52724 4.69657 4.75434 4.76538 4.88705 4.91025 4.92758 4.96945 5.09863 5.16974 5.32857 5.43537 5.69107 5.74452 5.85716 5.88773 6.14109 6.38108 6.50940 6.78314 6.86816 7.24270 7.40281 8.86759 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031295 B = 0.004035 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.498953 B = 6937.734014 C = 7646.490229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.559 6.559 14 N -0.663 5.663 15 C 0.090 3.910 16 C 0.078 3.922 17 N -0.479 5.479 18 C 0.093 3.907 19 C -0.150 4.150 20 C -0.098 4.098 21 C 0.103 3.897 22 N -0.674 5.674 23 C 0.057 3.943 24 C -0.094 4.094 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.266 0.734 29 H 0.425 0.575 30 H 0.183 0.817 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.352 0.648 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -3.207 18.871 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.069 0.931 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.314 3.686 13 O -0.436 6.436 14 N -0.310 5.310 15 C -0.007 4.007 16 C -0.084 4.084 17 N -0.187 5.187 18 C -0.044 4.044 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.027 4.027 22 N -0.302 5.302 23 C -0.073 4.073 24 C -0.134 4.134 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.264 0.736 30 H 0.200 0.800 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.272 -4.385 19.143 19.910 hybrid contribution -0.273 0.981 -2.002 2.246 sum 2.999 -3.404 17.142 17.732 Atomic orbital electron populations 1.21598 0.94744 0.99562 1.02148 1.18825 0.95499 0.96195 0.88707 0.93244 1.21231 1.31960 1.12920 0.90954 0.93122 1.25555 0.95097 0.95678 1.01357 1.69928 1.36926 1.23453 1.24514 0.85668 0.78731 0.78690 0.78909 1.19973 1.20085 1.20292 1.21909 0.77922 0.83738 0.84993 1.90514 1.38058 1.28100 1.86933 1.43597 1.57198 1.26921 1.03277 1.19096 0.94460 0.97994 0.89196 1.22868 0.99237 0.98320 0.87942 1.67524 1.17209 1.07554 1.26405 1.21425 0.89832 0.96603 0.96516 1.21451 1.00673 0.99776 0.93484 1.21724 0.95425 0.97274 0.98202 1.20875 0.90698 0.98839 0.92328 1.61040 1.36643 1.30430 1.02072 1.22223 0.88612 0.95612 1.00846 1.21143 1.01661 0.98549 0.92001 0.95923 0.92555 0.90788 0.92482 0.73571 0.79984 0.85342 0.89705 0.88940 0.83010 0.91221 0.86757 0.88788 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.87 71.98 0.64 -4.70 16 2 C 0.03 1.39 2.64 -12.29 -0.03 1.36 16 3 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 4 C -0.53 -29.87 8.37 25.60 0.21 -29.65 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -49.75 11.32 21.45 0.24 -49.50 16 8 Si 0.95 44.02 29.54 68.60 2.03 46.04 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.52 23.00 7.01 87.65 0.61 23.62 16 13 O -0.56 -28.26 12.94 -3.04 -0.04 -28.30 16 14 N -0.66 -22.14 5.21 -303.30 -1.58 -23.72 16 15 C 0.09 2.90 6.32 38.21 0.24 3.14 16 16 C 0.08 2.15 11.13 84.89 0.95 3.09 16 17 N -0.48 -13.34 10.21 -183.30 -1.87 -15.21 16 18 C 0.09 2.38 6.67 42.41 0.28 2.66 16 19 C -0.15 -4.11 5.79 -19.87 -0.12 -4.22 16 20 C -0.10 -3.27 8.44 22.63 0.19 -3.08 16 21 C 0.10 2.32 6.34 85.54 0.54 2.86 16 22 N -0.67 -11.70 6.97 -518.45 -3.61 -15.31 16 23 C 0.06 0.84 6.61 86.21 0.57 1.41 16 24 C -0.09 -1.62 6.06 29.85 0.18 -1.44 16 25 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.06 1.92 7.68 -2.39 -0.02 1.90 16 27 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 28 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.43 11.22 8.39 -92.71 -0.78 10.44 16 30 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.13 4.92 6.31 -2.91 -0.02 4.90 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.35 5.16 8.74 -89.69 -0.78 4.38 16 35 H 0.07 1.18 8.05 -2.39 -0.02 1.16 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -66.36 312.41 -0.57 -66.93 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.46 Total: 22.33 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.72 Total: -3.26 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -6.82 Total: -103.75 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.04 Total: -28.30 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.36 -0.57 -66.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357444041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.171 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds