Wall clock time and date at job start Mon Mar 30 2020 01:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47290 * 2 1 4 4 C 1.48193 * 111.07187 * 70.71096 * 3 2 1 5 5 C 1.53933 * 86.22110 * 137.46391 * 4 3 2 6 6 C 1.47954 * 111.00224 * 169.99670 * 3 2 1 7 7 H 1.09008 * 113.75830 * 336.85258 * 6 3 2 8 8 C 1.50705 * 113.75997 * 108.10117 * 6 3 2 9 9 O 1.21283 * 119.99234 * 358.02452 * 8 6 3 10 10 N 1.34769 * 120.00087 * 178.02433 * 8 6 3 11 11 C 1.39479 * 119.99962 * 185.25952 * 10 8 6 12 12 C 1.38597 * 119.58087 * 174.17460 * 11 10 8 13 13 C 1.40808 * 118.79261 * 179.97438 * 12 11 10 14 14 C 1.41544 * 120.99335 * 179.97438 * 13 12 11 15 15 H 1.07990 * 120.00433 * 20.51015 * 14 13 12 16 16 C 1.40032 * 119.99588 * 200.51310 * 14 13 12 17 17 N 1.30740 * 120.00551 * 34.98100 * 16 14 13 18 18 Si 1.86802 * 119.99603 * 214.98273 * 16 14 13 19 19 H 1.48505 * 109.46932 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47290 * 299.99509 * 18 16 14 21 21 H 1.48499 * 109.47355 * 60.00552 * 18 16 14 22 22 C 1.41174 * 118.00799 * 0.24641 * 13 12 11 23 23 C 1.37590 * 119.01715 * 359.48252 * 22 13 12 24 24 N 1.32087 * 121.10621 * 0.53270 * 23 22 13 25 25 H 1.09003 * 109.46863 * 59.99806 * 1 2 3 26 26 H 1.09000 * 109.47248 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47214 * 299.99529 * 1 2 3 28 28 H 1.09008 * 109.47082 * 240.00122 * 2 1 3 29 29 H 1.09003 * 109.46863 * 120.00194 * 2 1 3 30 30 H 1.09003 * 113.65848 * 23.13574 * 4 3 2 31 31 H 1.09003 * 113.82382 * 251.81047 * 4 3 2 32 32 H 1.08998 * 113.72754 * 222.01003 * 5 4 3 33 33 H 1.08997 * 113.82905 * 90.74679 * 5 4 3 34 34 H 0.96999 * 120.00571 * 5.25598 * 10 8 6 35 35 H 1.08001 * 120.60077 * 0.02562 * 12 11 10 36 36 H 0.97008 * 119.99610 * 5.89941 * 17 16 14 37 37 H 1.08003 * 120.49106 * 179.74999 * 22 13 12 38 38 H 1.08000 * 119.44499 * 180.29227 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7667 2.0396 1.3052 5 6 3.1868 2.6189 1.1748 6 6 3.4789 1.4314 0.2399 7 1 3.8676 0.5526 0.7545 8 6 4.2832 1.8022 -0.9794 9 8 3.7248 1.9940 -2.0388 10 7 5.6229 1.9206 -0.8926 11 6 6.3560 2.3698 -1.9909 12 6 7.7154 2.6042 -1.8566 13 6 8.4394 3.0569 -2.9762 14 6 9.8291 3.3115 -2.8912 15 1 10.4126 2.8645 -2.1000 16 6 10.4474 4.1430 -3.8331 17 7 9.8035 5.1714 -4.3199 18 14 12.1924 3.7828 -4.3941 19 1 12.6138 4.8036 -5.3870 20 1 13.1067 3.8236 -3.2247 21 1 12.2442 2.4354 -5.0164 22 6 7.7365 3.2548 -4.1844 23 6 6.3869 2.9897 -4.2226 24 7 5.7441 2.5659 -3.1493 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6526 1.3380 2.1316 31 1 0.9802 2.7936 1.2744 32 1 3.7567 2.5965 2.1037 33 1 3.2231 3.5881 0.6775 34 1 6.0774 1.6935 -0.0663 35 1 8.2104 2.4417 -0.9106 36 1 8.9315 5.4089 -3.9673 37 1 8.2514 3.6050 -5.0669 38 1 5.8434 3.1342 -5.1446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001445581414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:34 Heat of formation + Delta-G solvation = 31.264973 kcal Electronic energy + Delta-G solvation = -20609.757035 eV Core-core repulsion = 17453.098674 eV Total energy + Delta-G solvation = -3156.658361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60766 -39.00587 -37.43671 -34.65670 -33.64233 -32.81603 -30.54428 -28.98825 -27.44313 -26.70803 -25.70345 -22.52479 -22.03480 -21.85589 -20.45266 -19.41388 -18.21461 -17.30479 -16.45721 -15.86545 -15.14469 -14.92721 -14.45814 -14.39482 -14.24180 -14.11007 -13.80322 -13.16282 -12.88836 -12.67799 -12.51535 -12.31837 -12.07737 -11.75724 -11.64567 -11.50971 -11.23998 -11.10764 -10.76249 -10.52678 -10.42389 -10.11611 -9.72837 -9.43009 -9.10044 -8.81843 -8.24816 -7.75428 -7.42183 -7.09521 -4.68954 2.46507 2.79659 3.09353 3.17644 3.26695 3.30736 3.44834 3.91175 3.96583 4.29769 4.51752 4.63662 4.80866 4.92648 4.98629 5.11538 5.15277 5.35357 5.44641 5.53830 5.58024 5.60745 5.76997 5.90439 5.92050 6.02043 6.22173 6.50620 6.53944 6.66548 6.79822 6.88023 7.28382 7.32697 7.47760 7.64207 7.89067 8.00319 8.22413 8.56694 8.69352 8.85676 9.63541 9.83523 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046674 B = 0.003441 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.765323 B = 8134.104171 C = 8352.292071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 N -0.450 5.450 4 C 0.002 3.998 5 C -0.129 4.129 6 C 0.008 3.992 7 H 0.097 0.903 8 C 0.509 3.491 9 O -0.454 6.454 10 N -0.662 5.662 11 C 0.363 3.637 12 C -0.316 4.316 13 C 0.131 3.869 14 C -0.519 4.519 15 H 0.080 0.920 16 C 0.048 3.952 17 N -0.769 5.769 18 Si 1.062 2.938 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.272 1.272 22 C -0.287 4.287 23 C 0.128 3.872 24 N -0.565 5.565 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.405 0.595 35 H 0.100 0.900 36 H 0.301 0.699 37 H 0.110 0.890 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -6.214 11.372 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 N -0.173 5.173 4 C -0.127 4.127 5 C -0.167 4.167 6 C -0.105 4.105 7 H 0.115 0.885 8 C 0.292 3.708 9 O -0.321 6.321 10 N -0.309 5.309 11 C 0.137 3.863 12 C -0.342 4.342 13 C 0.123 3.877 14 C -0.548 4.548 15 H 0.098 0.902 16 C -0.178 4.178 17 N -0.390 5.390 18 Si 0.885 3.115 19 H -0.197 1.197 20 H -0.200 1.200 21 H -0.197 1.197 22 C -0.310 4.310 23 C -0.024 4.024 24 N -0.286 5.286 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.239 0.761 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.343 -5.430 8.877 13.985 hybrid contribution 0.266 -1.022 2.323 2.552 sum -9.077 -6.452 11.200 15.794 Atomic orbital electron populations 1.21694 0.94452 1.01551 1.02546 1.22631 0.96826 0.90598 1.01199 1.68501 1.03976 1.15208 1.29607 1.23915 0.98182 0.98979 0.91616 1.23287 0.96278 0.98396 0.98777 1.23488 0.91826 1.00053 0.95127 0.88543 1.20092 0.81970 0.79119 0.89619 1.90800 1.69336 1.43500 1.28462 1.43454 1.06800 1.66140 1.14528 1.18051 0.87639 0.93973 0.86650 1.21033 0.92029 1.21673 0.99469 1.17532 0.92747 0.87626 0.89808 1.20513 0.93113 1.27828 1.13302 0.90187 1.27121 1.06761 0.91555 0.92407 1.70437 1.15229 1.18298 1.35035 0.83687 0.72698 0.77597 0.77514 1.19733 1.19950 1.19721 1.21939 0.95503 1.14863 0.98745 1.21816 0.91560 0.94246 0.94770 1.67299 1.38816 1.24147 0.98294 0.91616 0.92301 0.92853 0.90315 0.94389 0.91112 0.88930 0.90101 0.88476 0.76113 0.88176 0.88589 0.87202 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.98 37.16 0.37 -1.01 16 2 C 0.02 0.18 5.54 -3.83 -0.02 0.16 16 3 N -0.45 -6.01 5.72 -231.08 -1.32 -7.34 16 4 C 0.00 0.02 7.12 -2.64 -0.02 0.00 16 5 C -0.13 -1.39 7.84 -25.79 -0.20 -1.59 16 6 C 0.01 0.11 3.72 -67.81 -0.25 -0.14 16 7 H 0.10 1.01 7.79 -51.92 -0.40 0.61 16 8 C 0.51 9.53 7.37 -10.99 -0.08 9.45 16 9 O -0.45 -10.80 14.94 5.56 0.08 -10.72 16 10 N -0.66 -12.37 5.39 -11.49 -0.06 -12.43 16 11 C 0.36 8.63 7.41 -154.69 -1.15 7.49 16 12 C -0.32 -7.67 9.73 -38.48 -0.37 -8.05 16 13 C 0.13 3.44 5.37 -106.55 -0.57 2.87 16 14 C -0.52 -13.36 8.96 -37.65 -0.34 -13.70 16 15 H 0.08 1.99 8.03 -52.49 -0.42 1.57 16 16 C 0.05 1.17 4.77 -17.34 -0.08 1.09 16 17 N -0.77 -19.73 12.32 55.55 0.68 -19.04 16 18 Si 1.06 20.65 30.05 -169.99 -5.11 15.55 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.29 -7.44 8.32 -38.70 -0.32 -7.76 16 23 C 0.13 3.22 11.15 -17.68 -0.20 3.02 16 24 N -0.57 -14.70 7.86 -12.52 -0.10 -14.80 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.45 7.55 -51.93 -0.39 0.06 16 28 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.04 0.36 7.69 -51.93 -0.40 -0.04 16 30 H 0.07 0.55 7.78 -51.93 -0.40 0.14 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.40 5.81 8.70 -40.82 -0.36 5.46 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.30 8.00 7.31 -40.82 -0.30 7.70 16 37 H 0.11 2.86 6.64 -52.48 -0.35 2.52 16 38 H 0.12 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -32.39 321.31 -9.42 -41.81 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.20 Total: 10.31 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.24 Total: -8.18 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.80 Total: -53.61 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.11 Total: 15.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.39 -9.42 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445581414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.071 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds