Wall clock time and date at job start Mon Mar 30 2020 01:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47290 * 2 1 4 4 C 1.48193 * 111.07187 * 70.71096 * 3 2 1 5 5 C 1.53933 * 86.22110 * 137.46391 * 4 3 2 6 6 C 1.47954 * 111.00224 * 169.99670 * 3 2 1 7 7 H 1.09008 * 113.75830 * 336.85258 * 6 3 2 8 8 C 1.50705 * 113.75997 * 108.10117 * 6 3 2 9 9 O 1.21283 * 119.99234 * 358.02452 * 8 6 3 10 10 N 1.34769 * 120.00087 * 178.02433 * 8 6 3 11 11 C 1.39479 * 119.99962 * 185.25952 * 10 8 6 12 12 C 1.38597 * 119.58087 * 174.17460 * 11 10 8 13 13 C 1.40808 * 118.79261 * 179.97438 * 12 11 10 14 14 C 1.41544 * 120.99335 * 179.97438 * 13 12 11 15 15 H 1.07990 * 120.00433 * 20.51015 * 14 13 12 16 16 C 1.40032 * 119.99588 * 200.51310 * 14 13 12 17 17 N 1.30740 * 120.00551 * 34.98100 * 16 14 13 18 18 Si 1.86802 * 119.99603 * 214.98273 * 16 14 13 19 19 H 1.48505 * 109.46932 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47290 * 299.99509 * 18 16 14 21 21 H 1.48499 * 109.47355 * 60.00552 * 18 16 14 22 22 C 1.41174 * 118.00799 * 0.24641 * 13 12 11 23 23 C 1.37590 * 119.01715 * 359.48252 * 22 13 12 24 24 N 1.32087 * 121.10621 * 0.53270 * 23 22 13 25 25 H 1.09003 * 109.46863 * 59.99806 * 1 2 3 26 26 H 1.09000 * 109.47248 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47214 * 299.99529 * 1 2 3 28 28 H 1.09008 * 109.47082 * 240.00122 * 2 1 3 29 29 H 1.09003 * 109.46863 * 120.00194 * 2 1 3 30 30 H 1.09003 * 113.65848 * 23.13574 * 4 3 2 31 31 H 1.09003 * 113.82382 * 251.81047 * 4 3 2 32 32 H 1.08998 * 113.72754 * 222.01003 * 5 4 3 33 33 H 1.08997 * 113.82905 * 90.74679 * 5 4 3 34 34 H 0.96999 * 120.00571 * 5.25598 * 10 8 6 35 35 H 1.08001 * 120.60077 * 0.02562 * 12 11 10 36 36 H 0.97008 * 119.99610 * 5.89941 * 17 16 14 37 37 H 1.08003 * 120.49106 * 179.74999 * 22 13 12 38 38 H 1.08000 * 119.44499 * 180.29227 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7667 2.0396 1.3052 5 6 3.1868 2.6189 1.1748 6 6 3.4789 1.4314 0.2399 7 1 3.8676 0.5526 0.7545 8 6 4.2832 1.8022 -0.9794 9 8 3.7248 1.9940 -2.0388 10 7 5.6229 1.9206 -0.8926 11 6 6.3560 2.3698 -1.9909 12 6 7.7154 2.6042 -1.8566 13 6 8.4394 3.0569 -2.9762 14 6 9.8291 3.3115 -2.8912 15 1 10.4126 2.8645 -2.1000 16 6 10.4474 4.1430 -3.8331 17 7 9.8035 5.1714 -4.3199 18 14 12.1924 3.7828 -4.3941 19 1 12.6138 4.8036 -5.3870 20 1 13.1067 3.8236 -3.2247 21 1 12.2442 2.4354 -5.0164 22 6 7.7365 3.2548 -4.1844 23 6 6.3869 2.9897 -4.2226 24 7 5.7441 2.5659 -3.1493 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6526 1.3380 2.1316 31 1 0.9802 2.7936 1.2744 32 1 3.7567 2.5965 2.1037 33 1 3.2231 3.5881 0.6775 34 1 6.0774 1.6935 -0.0663 35 1 8.2104 2.4417 -0.9106 36 1 8.9315 5.4089 -3.9673 37 1 8.2514 3.6050 -5.0669 38 1 5.8434 3.1342 -5.1446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001445581414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:33 Heat of formation + Delta-G solvation = 8.641115 kcal Electronic energy + Delta-G solvation = -20610.738079 eV Core-core repulsion = 17453.098674 eV Total energy + Delta-G solvation = -3157.639405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79822 -40.59617 -39.06426 -36.50174 -35.39448 -33.66407 -32.49950 -30.73931 -28.30116 -27.99219 -27.54502 -23.94968 -23.76417 -23.06158 -21.87365 -20.62426 -20.04445 -18.67160 -17.86946 -17.05393 -16.60547 -16.39973 -16.25248 -15.88469 -15.73960 -15.53801 -14.87705 -14.75503 -14.46666 -14.24468 -13.95369 -13.63112 -13.38693 -12.91459 -12.89596 -12.59313 -12.40286 -12.39521 -11.99132 -11.90507 -11.84185 -11.63535 -11.48108 -10.97346 -10.93695 -10.23754 -9.82801 -9.60622 -9.35911 -8.96152 -6.69507 0.60845 0.92011 1.51988 1.62573 1.80917 1.85487 1.95769 2.29220 2.64997 2.92657 3.39032 3.53112 3.61942 3.87155 3.96944 4.09561 4.15612 4.29948 4.38233 4.57054 4.60316 4.70865 4.71154 4.75972 4.84548 4.86459 4.88096 4.99694 5.12110 5.19506 5.32103 5.40886 5.43309 5.50069 5.69409 6.03077 6.04423 6.17557 6.52654 6.59280 6.76640 7.30634 7.76305 7.84460 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046674 B = 0.003441 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.765323 B = 8134.104171 C = 8352.292071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.015 3.985 3 N -0.492 5.492 4 C 0.014 3.986 5 C -0.122 4.122 6 C 0.015 3.985 7 H 0.133 0.867 8 C 0.504 3.496 9 O -0.513 6.513 10 N -0.650 5.650 11 C 0.360 3.640 12 C -0.324 4.324 13 C 0.105 3.895 14 C -0.539 4.539 15 H 0.086 0.914 16 C 0.015 3.985 17 N -0.784 5.784 18 Si 1.116 2.884 19 H -0.271 1.271 20 H -0.251 1.251 21 H -0.265 1.265 22 C -0.302 4.302 23 C 0.121 3.879 24 N -0.590 5.590 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.426 0.574 35 H 0.122 0.878 36 H 0.285 0.715 37 H 0.100 0.900 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 -7.314 13.953 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 N -0.216 5.216 4 C -0.114 4.114 5 C -0.160 4.160 6 C -0.098 4.098 7 H 0.151 0.849 8 C 0.290 3.710 9 O -0.384 6.384 10 N -0.298 5.298 11 C 0.132 3.868 12 C -0.350 4.350 13 C 0.097 3.903 14 C -0.567 4.567 15 H 0.104 0.896 16 C -0.207 4.207 17 N -0.404 5.404 18 Si 0.932 3.068 19 H -0.195 1.195 20 H -0.174 1.174 21 H -0.189 1.189 22 C -0.326 4.326 23 C -0.031 4.031 24 N -0.311 5.311 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.264 0.736 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.020 -6.543 11.535 16.039 hybrid contribution 0.060 -0.688 1.553 1.700 sum -8.960 -7.231 13.088 17.432 Atomic orbital electron populations 1.21665 0.93380 1.02528 1.02182 1.22657 0.97732 0.89745 1.01161 1.68456 1.04015 1.16757 1.32369 1.23980 0.97497 0.99079 0.90826 1.23275 0.97557 0.96038 0.99165 1.23548 0.91218 1.02509 0.92521 0.84936 1.21251 0.81708 0.77206 0.90806 1.90770 1.70289 1.46042 1.31265 1.43461 1.07124 1.65262 1.13986 1.18363 0.88141 0.92975 0.87288 1.21239 0.92363 1.21579 0.99839 1.17915 0.93533 0.88267 0.90575 1.20785 0.93216 1.28384 1.14352 0.89623 1.28601 1.10063 0.90385 0.91623 1.70556 1.14732 1.19523 1.35570 0.83038 0.68213 0.77589 0.77986 1.19528 1.17443 1.18945 1.21895 0.95872 1.16144 0.98668 1.22108 0.91567 0.93859 0.95551 1.67415 1.39465 1.25014 0.99231 0.93799 0.90672 0.91340 0.92956 0.91695 0.87866 0.88755 0.86477 0.91080 0.73574 0.86022 0.90338 0.88153 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.98 71.98 0.72 -1.69 16 2 C 0.02 0.31 5.54 86.30 0.48 0.79 16 3 N -0.49 -12.29 5.72 -885.00 -5.07 -17.36 16 4 C 0.01 0.22 7.12 86.36 0.62 0.84 16 5 C -0.12 -2.27 7.84 31.23 0.24 -2.02 16 6 C 0.01 0.36 3.72 44.27 0.16 0.52 16 7 H 0.13 2.22 7.79 -2.38 -0.02 2.20 16 8 C 0.50 18.66 7.37 87.66 0.65 19.30 16 9 O -0.51 -25.01 14.94 -3.04 -0.05 -25.06 16 10 N -0.65 -23.73 5.39 -308.65 -1.66 -25.39 16 11 C 0.36 17.21 7.41 132.75 0.98 18.19 16 12 C -0.32 -15.78 9.73 22.98 0.22 -15.55 16 13 C 0.10 5.62 5.37 -21.11 -0.11 5.50 16 14 C -0.54 -27.86 8.96 23.52 0.21 -27.65 16 15 H 0.09 4.22 8.03 -2.92 -0.02 4.20 16 16 C 0.01 0.71 4.77 85.29 0.41 1.12 16 17 N -0.78 -40.86 12.32 21.84 0.27 -40.59 16 18 Si 1.12 40.61 30.05 68.60 2.06 42.67 16 19 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 22 C -0.30 -16.18 8.32 22.84 0.19 -15.99 16 23 C 0.12 6.30 11.15 84.50 0.94 7.24 16 24 N -0.59 -31.45 7.86 -193.52 -1.52 -32.97 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 0.96 7.55 -2.39 -0.02 0.94 16 28 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 29 H 0.06 0.97 7.69 -2.39 -0.02 0.95 16 30 H 0.10 1.04 7.78 -2.39 -0.02 1.03 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 34 H 0.43 11.36 8.70 -92.71 -0.81 10.55 16 35 H 0.12 5.23 8.06 -2.91 -0.02 5.20 16 36 H 0.28 15.68 7.31 -92.70 -0.68 15.00 16 37 H 0.10 5.45 6.64 -2.91 -0.02 5.43 16 38 H 0.14 6.54 8.06 -2.91 -0.02 6.52 16 Total: -1.00 -73.51 321.31 0.10 -73.40 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.36 Total: 34.68 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.71 Total: -9.40 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -7.98 Total: -116.31 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.06 Total: 42.67 kcal Total: -73.51 0.10 -73.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445581414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.045 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds