Wall clock time and date at job start Mon Mar 30 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46982 * 2 1 4 4 C 1.50696 * 109.47241 * 239.99706 * 2 1 3 5 5 H 1.07996 * 120.00301 * 240.00298 * 4 2 1 6 6 C 1.37884 * 120.00108 * 60.00195 * 4 2 1 7 7 N 1.31517 * 119.99726 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47121 * 120.00242 * 8 6 4 11 11 H 1.48500 * 109.46892 * 239.99948 * 8 6 4 12 12 C 1.50703 * 109.46642 * 119.99692 * 2 1 3 13 13 O 1.21280 * 119.99688 * 120.00594 * 12 2 1 14 14 N 1.34769 * 119.99964 * 299.99862 * 12 2 1 15 15 C 1.46798 * 121.29688 * 0.02562 * 14 12 2 16 16 C 1.50515 * 109.49988 * 224.19937 * 15 14 12 17 17 C 1.38942 * 118.80264 * 168.60325 * 16 15 14 18 18 N 1.32216 * 119.23417 * 179.52463 * 17 16 15 19 19 C 1.31812 * 120.58456 * 359.92219 * 18 17 16 20 20 N 1.31570 * 121.73313 * 0.27024 * 19 18 17 21 21 C 1.32967 * 121.10122 * 0.02895 * 20 19 18 22 22 C 1.50407 * 118.39005 * 178.83936 * 21 20 19 23 23 H 1.08996 * 109.22563 * 280.94086 * 22 21 20 24 24 C 1.53002 * 109.22620 * 40.33951 * 22 21 20 25 25 C 1.47216 * 121.28355 * 179.97438 * 14 12 2 26 26 H 1.09005 * 109.46969 * 59.99923 * 1 2 3 27 27 H 1.08995 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47318 * 300.00733 * 1 2 3 29 29 H 0.96998 * 119.99500 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46694 * 104.18951 * 15 14 12 31 31 H 1.08998 * 109.46131 * 344.20457 * 15 14 12 32 32 H 1.07997 * 120.38382 * 359.52978 * 17 16 15 33 33 H 1.08010 * 119.13437 * 180.29808 * 19 18 17 34 34 H 1.09007 * 109.46984 * 60.00037 * 24 22 21 35 35 H 1.08990 * 109.46931 * 180.02562 * 24 22 21 36 36 H 1.08996 * 109.46803 * 300.00480 * 24 22 21 37 37 H 1.08999 * 109.74254 * 356.29969 * 25 14 12 38 38 H 1.08997 * 109.79120 * 235.59858 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 3.1465 -2.2871 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4545 15 6 0.8643 0.9407 2.6221 16 6 1.4506 1.8248 3.6899 17 6 0.9499 3.1118 3.8428 18 7 1.4522 3.8924 4.7843 19 6 2.4159 3.4583 5.5719 20 7 2.9151 2.2470 5.4516 21 6 2.4645 1.4074 4.5242 22 6 3.0971 0.0465 4.4235 23 1 4.0440 0.1295 3.8901 24 6 3.3575 -0.4934 5.8312 25 6 2.1811 -0.9219 3.6754 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 0.7089 1.1611 -3.4845 30 1 -0.1409 0.6363 2.9141 31 1 0.8189 1.4888 1.6811 32 1 0.1595 3.4703 3.2002 33 1 2.8057 4.1142 6.3365 34 1 2.4141 -0.5680 6.3721 35 1 3.8165 -1.4796 5.7629 36 1 4.0278 0.1830 6.3615 37 1 2.7356 -1.8216 3.4086 38 1 1.3316 -1.1862 4.3051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455137269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:58 Heat of formation + Delta-G solvation = 13.741328 kcal Electronic energy + Delta-G solvation = -21598.206462 eV Core-core repulsion = 18440.788219 eV Total energy + Delta-G solvation = -3157.418243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43208 -39.25819 -36.62267 -34.81113 -33.81943 -32.37128 -32.00211 -30.44568 -26.99235 -26.15354 -25.20245 -24.78984 -22.99210 -22.11241 -20.72017 -18.82007 -17.54156 -17.03717 -16.44933 -15.99520 -15.45542 -15.24609 -14.83546 -14.48592 -14.27642 -14.05090 -13.69928 -13.27715 -12.92788 -12.74339 -12.49822 -12.04217 -11.92168 -11.65832 -11.55613 -11.21636 -11.05986 -10.91453 -10.72978 -10.56010 -10.47585 -10.32198 -10.00369 -9.30633 -9.24500 -9.02292 -8.70405 -8.37579 -8.30101 -6.08369 -4.11274 0.84826 0.98845 3.29656 3.34598 3.38117 3.47550 3.54459 3.68243 3.96965 4.14650 4.32753 4.43212 4.61881 4.78296 4.99385 5.06676 5.25287 5.28107 5.38835 5.43590 5.52409 5.60108 5.76416 5.81796 5.84875 6.01377 6.14335 6.16901 6.36189 6.52213 6.73539 6.77904 6.88354 6.94059 7.37969 7.66868 7.88452 8.01582 8.02646 8.29170 8.97489 9.07378 9.54551 10.99399 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.005111 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.727544 B = 5476.962678 C = 6144.783174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.527 3.473 13 O -0.538 6.538 14 N -0.630 5.630 15 C 0.158 3.842 16 C -0.194 4.194 17 C 0.156 3.844 18 N -0.523 5.523 19 C 0.284 3.716 20 N -0.519 5.519 21 C 0.192 3.808 22 C -0.060 4.060 23 H 0.099 0.901 24 C -0.132 4.132 25 C 0.114 3.886 26 H 0.094 0.906 27 H 0.032 0.968 28 H 0.021 0.979 29 H 0.261 0.739 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 3.341 15.321 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.319 3.681 13 O -0.413 6.413 14 N -0.366 5.366 15 C 0.033 3.967 16 C -0.198 4.198 17 C -0.012 4.012 18 N -0.236 5.236 19 C -0.004 4.004 20 N -0.233 5.233 21 C 0.048 3.952 22 C -0.080 4.080 23 H 0.117 0.883 24 C -0.191 4.191 25 C -0.009 4.009 26 H 0.113 0.887 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.190 0.810 33 H 0.210 0.790 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.480 3.490 15.780 16.168 hybrid contribution -0.095 -0.647 -1.368 1.516 sum -0.574 2.843 14.412 14.701 Atomic orbital electron populations 1.22000 0.96423 1.00248 1.01441 1.18877 0.94284 0.96707 0.89195 0.93046 1.21166 1.30993 1.12852 0.88891 0.90712 1.24942 0.95056 0.95055 0.99133 1.69865 1.37079 1.23097 1.23525 0.86398 0.78646 0.79807 0.82432 1.19542 1.21004 1.21044 1.22072 0.78060 0.84138 0.83810 1.90535 1.37877 1.26943 1.85899 1.48372 1.53131 1.28933 1.06115 1.20563 0.93127 0.85562 0.97419 1.21660 0.99729 0.97980 1.00468 1.23213 0.96194 0.88731 0.93021 1.68439 1.12009 1.37211 1.05944 1.24849 0.89387 0.90441 0.95726 1.68362 1.29060 1.04732 1.21099 1.21181 0.90276 0.95500 0.88234 1.20422 0.99731 0.89318 0.98560 0.88347 1.21652 1.02138 1.01085 0.94176 1.21572 0.97432 0.96024 0.85897 0.88713 0.94868 0.96011 0.92961 0.89951 0.86465 0.81017 0.79031 0.92844 0.91888 0.91011 0.87965 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.53 37.16 0.32 -2.77 16 2 C 0.03 0.72 1.84 -92.92 -0.17 0.55 16 3 H 0.05 1.28 7.58 -51.93 -0.39 0.88 16 4 C -0.50 -13.85 8.37 -34.44 -0.29 -14.14 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.53 11.63 7.11 -10.99 -0.08 11.55 16 13 O -0.54 -13.56 14.94 5.56 0.08 -13.47 16 14 N -0.63 -10.75 2.94 -174.43 -0.51 -11.27 16 15 C 0.16 2.23 4.55 -5.12 -0.02 2.21 16 16 C -0.19 -2.59 5.82 -104.62 -0.61 -3.20 16 17 C 0.16 1.89 10.94 -17.13 -0.19 1.71 16 18 N -0.52 -6.67 10.45 -14.56 -0.15 -6.82 16 19 C 0.28 3.40 12.28 -92.33 -1.13 2.26 16 20 N -0.52 -6.90 9.37 -11.00 -0.10 -7.00 16 21 C 0.19 2.65 6.24 -82.41 -0.51 2.14 16 22 C -0.06 -0.79 3.08 -91.98 -0.28 -1.07 16 23 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 24 C -0.13 -1.40 8.80 37.16 0.33 -1.07 16 25 C 0.11 1.64 5.73 -3.72 -0.02 1.62 16 26 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.37 4.83 -51.93 -0.25 0.12 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.08 1.00 7.84 -51.93 -0.41 0.59 16 31 H 0.12 1.76 5.15 -51.93 -0.27 1.50 16 32 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.19 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.77 7.69 -51.93 -0.40 0.37 16 37 H 0.10 1.58 7.06 -51.93 -0.37 1.22 16 38 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -31.38 306.52 -8.07 -39.45 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.85 Total: 0.60 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.76 Total: 1.29 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.14 Total: -48.91 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.38 -8.07 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455137269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.189 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds