Wall clock time and date at job start Mon Mar 30 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46982 * 2 1 4 4 C 1.50696 * 109.47241 * 239.99706 * 2 1 3 5 5 H 1.07996 * 120.00301 * 240.00298 * 4 2 1 6 6 C 1.37884 * 120.00108 * 60.00195 * 4 2 1 7 7 N 1.31517 * 119.99726 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47121 * 120.00242 * 8 6 4 11 11 H 1.48500 * 109.46892 * 239.99948 * 8 6 4 12 12 C 1.50703 * 109.46642 * 119.99692 * 2 1 3 13 13 O 1.21280 * 119.99688 * 120.00594 * 12 2 1 14 14 N 1.34769 * 119.99964 * 299.99862 * 12 2 1 15 15 C 1.46798 * 121.29688 * 0.02562 * 14 12 2 16 16 C 1.50515 * 109.49988 * 224.19937 * 15 14 12 17 17 C 1.38942 * 118.80264 * 168.60325 * 16 15 14 18 18 N 1.32216 * 119.23417 * 179.52463 * 17 16 15 19 19 C 1.31812 * 120.58456 * 359.92219 * 18 17 16 20 20 N 1.31570 * 121.73313 * 0.27024 * 19 18 17 21 21 C 1.32967 * 121.10122 * 0.02895 * 20 19 18 22 22 C 1.50407 * 118.39005 * 178.83936 * 21 20 19 23 23 H 1.08996 * 109.22563 * 280.94086 * 22 21 20 24 24 C 1.53002 * 109.22620 * 40.33951 * 22 21 20 25 25 C 1.47216 * 121.28355 * 179.97438 * 14 12 2 26 26 H 1.09005 * 109.46969 * 59.99923 * 1 2 3 27 27 H 1.08995 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47318 * 300.00733 * 1 2 3 29 29 H 0.96998 * 119.99500 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46694 * 104.18951 * 15 14 12 31 31 H 1.08998 * 109.46131 * 344.20457 * 15 14 12 32 32 H 1.07997 * 120.38382 * 359.52978 * 17 16 15 33 33 H 1.08010 * 119.13437 * 180.29808 * 19 18 17 34 34 H 1.09007 * 109.46984 * 60.00037 * 24 22 21 35 35 H 1.08990 * 109.46931 * 180.02562 * 24 22 21 36 36 H 1.08996 * 109.46803 * 300.00480 * 24 22 21 37 37 H 1.08999 * 109.74254 * 356.29969 * 25 14 12 38 38 H 1.08997 * 109.79120 * 235.59858 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 3.1465 -2.2871 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4545 15 6 0.8643 0.9407 2.6221 16 6 1.4506 1.8248 3.6899 17 6 0.9499 3.1118 3.8428 18 7 1.4522 3.8924 4.7843 19 6 2.4159 3.4583 5.5719 20 7 2.9151 2.2470 5.4516 21 6 2.4645 1.4074 4.5242 22 6 3.0971 0.0465 4.4235 23 1 4.0440 0.1295 3.8901 24 6 3.3575 -0.4934 5.8312 25 6 2.1811 -0.9219 3.6754 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 0.7089 1.1611 -3.4845 30 1 -0.1409 0.6363 2.9141 31 1 0.8189 1.4888 1.6811 32 1 0.1595 3.4703 3.2002 33 1 2.8057 4.1142 6.3365 34 1 2.4141 -0.5680 6.3721 35 1 3.8165 -1.4796 5.7629 36 1 4.0278 0.1830 6.3615 37 1 2.7356 -1.8216 3.4086 38 1 1.3316 -1.1862 4.3051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455137269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:58 Heat of formation + Delta-G solvation = -5.192363 kcal Electronic energy + Delta-G solvation = -21599.027488 eV Core-core repulsion = 18440.788219 eV Total energy + Delta-G solvation = -3158.239270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46658 -40.76596 -37.94813 -36.17170 -35.54183 -33.56744 -33.12304 -32.24166 -28.11736 -27.43033 -27.11023 -25.81674 -24.39013 -23.41588 -21.95846 -20.22491 -18.66934 -18.47477 -18.03334 -17.40071 -17.02656 -16.62457 -16.09060 -16.05510 -15.49173 -15.29903 -14.90042 -14.64212 -14.21246 -14.09636 -13.99315 -13.46685 -13.13018 -12.96649 -12.91867 -12.72308 -12.52855 -12.42341 -12.27974 -12.19816 -12.01307 -11.88969 -11.49000 -11.02065 -10.61667 -10.39101 -10.24578 -10.20485 -9.68592 -8.15476 -6.24993 -0.12750 0.01005 1.39174 1.41923 1.54507 1.83556 2.00589 2.45263 2.71667 2.98815 3.14459 3.26295 3.35967 3.55022 3.72976 3.93399 4.00306 4.13448 4.36098 4.39205 4.45793 4.56008 4.63062 4.73370 4.76662 4.84555 4.95990 4.99710 5.02437 5.08616 5.27411 5.41342 5.46890 5.54983 5.75250 5.93190 5.96257 6.20790 6.50484 6.82970 7.06568 7.36285 7.45659 8.90364 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.005111 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.727544 B = 5476.962678 C = 6144.783174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.581 6.581 14 N -0.622 5.622 15 C 0.156 3.844 16 C -0.204 4.204 17 C 0.161 3.839 18 N -0.533 5.533 19 C 0.284 3.716 20 N -0.529 5.529 21 C 0.179 3.821 22 C -0.056 4.056 23 H 0.079 0.921 24 C -0.123 4.123 25 C 0.114 3.886 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.265 0.735 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.200 0.800 33 H 0.224 0.776 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 4.265 16.659 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.007 3.993 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.460 6.460 14 N -0.355 5.355 15 C 0.032 3.968 16 C -0.209 4.209 17 C -0.007 4.007 18 N -0.247 5.247 19 C -0.004 4.004 20 N -0.243 5.243 21 C 0.035 3.965 22 C -0.076 4.076 23 H 0.097 0.903 24 C -0.181 4.181 25 C -0.008 4.008 26 H 0.090 0.910 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.216 0.784 33 H 0.240 0.760 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.449 4.451 17.161 17.788 hybrid contribution 0.210 -0.850 -1.707 1.918 sum -1.239 3.601 15.454 15.917 Atomic orbital electron populations 1.21822 0.94559 0.99808 1.02518 1.18774 0.95747 0.95594 0.89203 0.94294 1.21304 1.31561 1.12706 0.91142 0.93509 1.25536 0.95192 0.95738 1.01236 1.69933 1.37107 1.23454 1.24246 0.85592 0.78378 0.78602 0.79617 1.20570 1.19841 1.20162 1.21640 0.77876 0.83625 0.85013 1.90508 1.39881 1.28782 1.86804 1.48223 1.52416 1.29429 1.05451 1.20714 0.94006 0.84476 0.97556 1.21571 1.00362 0.98507 1.00431 1.23646 0.96227 0.87981 0.92804 1.68545 1.12461 1.37319 1.06353 1.25528 0.88713 0.90315 0.95836 1.68408 1.29421 1.05274 1.21196 1.21289 0.90627 0.95813 0.88763 1.20340 0.98377 0.89264 0.99638 0.90307 1.21588 1.02666 1.01471 0.92353 1.21755 0.98576 0.95583 0.84909 0.90974 0.95897 0.91519 0.92583 0.87006 0.87403 0.78371 0.75971 0.91928 0.90768 0.91104 0.89483 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.53 71.98 0.61 -4.90 16 2 C 0.03 1.35 1.84 -12.28 -0.02 1.33 16 3 H 0.04 1.98 7.58 -2.39 -0.02 1.96 16 4 C -0.53 -30.12 8.37 25.60 0.21 -29.91 16 5 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -49.60 11.32 21.45 0.24 -49.36 16 8 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 9 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.53 23.64 7.11 87.66 0.62 24.27 16 13 O -0.58 -30.36 14.94 -3.03 -0.05 -30.41 16 14 N -0.62 -20.76 2.94 -824.18 -2.42 -23.18 16 15 C 0.16 4.07 4.55 85.52 0.39 4.46 16 16 C -0.20 -5.01 5.82 -19.86 -0.12 -5.12 16 17 C 0.16 3.47 10.94 84.80 0.93 4.40 16 18 N -0.53 -12.17 10.45 -199.99 -2.09 -14.26 16 19 C 0.28 6.05 12.28 180.95 2.22 8.27 16 20 N -0.53 -12.98 9.37 -188.71 -1.77 -14.75 16 21 C 0.18 4.63 6.24 42.19 0.26 4.90 16 22 C -0.06 -1.42 3.08 -11.68 -0.04 -1.45 16 23 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.12 -2.37 8.80 71.98 0.63 -1.74 16 25 C 0.11 3.16 5.73 86.20 0.49 3.65 16 26 H 0.07 3.43 6.07 -2.38 -0.01 3.41 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 2.17 4.83 -2.39 -0.01 2.16 16 29 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.11 2.30 7.84 -2.39 -0.02 2.28 16 31 H 0.11 3.05 5.15 -2.39 -0.01 3.04 16 32 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.22 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.40 7.69 -2.39 -0.02 1.39 16 37 H 0.09 2.70 7.06 -2.39 -0.02 2.69 16 38 H 0.10 2.12 8.09 -2.39 -0.02 2.11 16 Total: -1.00 -68.88 306.52 3.68 -65.20 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.08 Total: 10.52 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.66 Total: 9.83 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -6.04 Total: -101.54 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.05 Total: -30.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.88 3.68 -65.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455137269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.013 kcal (2) G-P(sol) polarization free energy of solvation -68.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds