Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46843 * 2 1 4 4 C 1.46505 * 119.99754 * 270.00241 * 3 2 1 5 5 C 1.50696 * 109.47131 * 269.99563 * 4 3 2 6 6 H 1.08000 * 120.00279 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00246 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00022 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46982 * 89.99916 * 9 7 5 11 11 H 1.48498 * 109.47468 * 210.00125 * 9 7 5 12 12 H 1.48505 * 109.46928 * 330.00301 * 9 7 5 13 13 C 1.34770 * 120.00015 * 90.00331 * 3 2 1 14 14 O 1.21668 * 119.99992 * 179.97438 * 13 3 2 15 15 C 1.46658 * 120.00138 * 359.97438 * 13 3 2 16 16 C 1.34656 * 120.00224 * 187.67540 * 15 13 3 17 17 C 1.50698 * 120.00059 * 185.92662 * 16 15 13 18 18 C 1.47364 * 119.99893 * 5.92239 * 16 15 13 19 19 C 1.39814 * 120.13638 * 271.27525 * 18 16 15 20 20 N 1.31990 * 119.83319 * 180.02562 * 19 18 16 21 21 C 1.32200 * 120.10572 * 0.02562 * 20 19 18 22 22 C 1.38655 * 120.27076 * 0.25712 * 21 20 19 23 23 N 1.31850 * 120.16609 * 359.47517 * 22 21 20 24 24 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47154 * 299.99510 * 1 2 3 26 26 H 1.09002 * 109.47566 * 59.99884 * 1 2 3 27 27 H 1.09001 * 109.46674 * 240.00604 * 2 1 3 28 28 H 1.08994 * 109.47751 * 120.00410 * 2 1 3 29 29 H 1.08993 * 109.47112 * 30.00453 * 4 3 2 30 30 H 1.09003 * 109.46575 * 150.00149 * 4 3 2 31 31 H 0.96997 * 119.99923 * 180.02562 * 8 7 5 32 32 H 1.08006 * 119.99638 * 7.67436 * 15 13 3 33 33 H 1.09003 * 109.47257 * 269.99971 * 17 16 15 34 34 H 1.09006 * 109.47458 * 30.00163 * 17 16 15 35 35 H 1.09003 * 109.47514 * 149.99977 * 17 16 15 36 36 H 1.08002 * 120.08511 * 0.04476 * 19 18 16 37 37 H 1.07999 * 119.86555 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.91932 * 179.74307 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8352 -1.7038 6 1 4.3426 1.2305 -1.0963 7 6 4.1492 2.3907 -2.8775 8 7 5.3911 2.1838 -3.2575 9 14 3.0131 3.4372 -3.9281 10 1 3.1168 4.8571 -3.5059 11 1 3.4061 3.3151 -5.3549 12 1 1.6133 2.9713 -3.7586 13 6 2.2429 2.0166 1.1671 14 8 2.6489 3.1635 1.1671 15 6 1.9981 1.3254 2.4373 16 6 2.0727 2.0036 3.5982 17 6 1.9537 1.2693 4.9088 18 6 2.2707 3.4638 3.5870 19 6 3.5632 3.9968 3.5727 20 7 3.7337 5.3056 3.5632 21 6 2.6853 6.1109 3.5679 22 6 1.4017 5.5871 3.5880 23 7 1.2189 4.2813 3.5923 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.5815 1.6878 -2.0283 30 1 2.0953 3.1411 -1.1384 31 1 5.7172 2.5749 -4.0830 32 1 1.7579 0.2724 2.4414 33 1 0.9068 1.2302 5.2097 34 1 2.3367 0.2553 4.7933 35 1 2.5317 1.7912 5.6715 36 1 4.4200 3.3392 3.5690 37 1 2.8293 7.1812 3.5606 38 1 0.5493 6.2503 3.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464378349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = 34.903133 kcal Electronic energy + Delta-G solvation = -21308.859504 eV Core-core repulsion = 18152.358906 eV Total energy + Delta-G solvation = -3156.500599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75273 -39.15074 -35.82623 -34.97631 -33.66698 -32.70477 -30.56738 -30.35502 -28.70667 -27.02431 -24.65373 -24.17846 -22.99502 -22.62575 -19.94724 -18.32814 -17.22415 -16.98833 -16.79383 -16.63009 -15.92828 -14.81374 -14.58769 -14.47930 -14.03914 -13.59004 -13.45870 -13.26503 -13.17176 -12.91774 -12.50436 -12.46995 -12.14624 -11.90716 -11.77296 -11.43805 -11.32890 -10.97942 -10.88160 -10.74966 -10.50122 -10.17198 -9.58749 -9.40915 -9.35006 -8.70318 -8.59224 -8.52324 -7.71278 -6.09108 -4.07621 1.02900 1.36573 1.46141 3.28267 3.34238 3.36450 3.78499 3.84307 3.94478 4.14948 4.39142 4.55787 4.77702 4.82325 4.93683 5.17127 5.24092 5.28232 5.38695 5.41973 5.48830 5.55676 5.60839 5.65081 5.70584 5.77495 5.98500 6.14361 6.16511 6.34167 6.42662 6.61436 6.73679 6.95372 7.34012 7.52324 7.60712 8.03199 8.24356 8.46333 8.91381 8.97122 9.51355 11.04279 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.006293 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.513651 B = 4448.444705 C = 5400.623769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.584 5.584 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.534 3.466 14 O -0.537 6.537 15 C -0.173 4.173 16 C -0.018 4.018 17 C -0.111 4.111 18 C 0.141 3.859 19 C 0.096 3.904 20 N -0.436 5.436 21 C 0.039 3.961 22 C 0.048 3.952 23 N -0.433 5.433 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -1.828 15.262 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.315 5.315 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.323 3.677 14 O -0.416 6.416 15 C -0.195 4.195 16 C -0.021 4.021 17 C -0.168 4.168 18 C 0.001 3.999 19 C -0.065 4.065 20 N -0.150 5.150 21 C -0.120 4.120 22 C -0.112 4.112 23 N -0.148 5.148 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.765 -1.148 15.050 17.977 hybrid contribution -0.480 0.513 -0.995 1.218 sum -10.245 -0.635 14.056 17.405 Atomic orbital electron populations 1.22240 0.96657 1.01558 1.02362 1.21494 0.93481 0.83775 1.03115 1.47841 1.63241 1.13400 1.06985 1.19630 0.97326 0.93272 0.80044 1.21311 0.95264 1.32876 1.07110 0.90734 1.24843 0.94975 0.95776 0.97342 1.69891 1.15092 1.44964 1.23581 0.86870 0.81497 0.81630 0.79815 1.20008 1.20991 1.19115 1.18232 0.78913 0.86384 0.84160 1.90777 1.46215 1.17788 1.86821 1.23253 1.03208 1.00890 0.92158 1.20572 0.96050 0.89975 0.95536 1.20841 1.03011 0.99846 0.93093 1.20526 0.90732 0.93865 0.94750 1.23545 0.96808 0.92012 0.94109 1.68343 1.33810 1.04424 1.08426 1.23668 0.89696 1.01003 0.97638 1.23551 0.98056 0.92147 0.97418 1.68478 1.32927 1.04230 1.09185 0.91956 0.92783 0.92333 0.89720 0.91168 0.95301 0.94793 0.92566 0.84420 0.90218 0.90382 0.91185 0.82081 0.82007 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.64 5.89 -4.04 -0.02 1.62 16 3 N -0.58 -12.20 2.46 -176.62 -0.43 -12.63 16 4 C 0.22 5.44 4.23 -5.19 -0.02 5.42 16 5 C -0.53 -15.33 9.94 -34.44 -0.34 -15.68 16 6 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 8 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 9 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.53 11.10 7.53 -12.87 -0.10 11.00 16 14 O -0.54 -13.19 12.87 5.22 0.07 -13.12 16 15 C -0.17 -2.64 8.92 -37.45 -0.33 -2.98 16 16 C -0.02 -0.25 5.67 -102.18 -0.58 -0.83 16 17 C -0.11 -1.03 10.04 36.00 0.36 -0.67 16 18 C 0.14 2.33 4.00 -82.96 -0.33 2.00 16 19 C 0.10 1.65 9.66 -16.89 -0.16 1.48 16 20 N -0.44 -7.52 10.49 -12.64 -0.13 -7.65 16 21 C 0.04 0.56 11.22 -17.24 -0.19 0.36 16 22 C 0.05 0.68 11.22 -17.39 -0.20 0.49 16 23 N -0.43 -7.16 10.46 -9.72 -0.10 -7.26 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.07 0.90 6.01 -51.93 -0.31 0.59 16 29 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 30 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.14 1.62 6.15 -52.48 -0.32 1.29 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 37 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -36.72 325.99 -6.39 -43.11 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.17 Total: 0.01 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.64 Total: 2.46 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.11 Total: -54.75 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.72 -6.39 -43.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464378349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.014 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds