Wall clock time and date at job start Mon Mar 30 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46843 * 2 1 4 4 C 1.46505 * 119.99754 * 270.00241 * 3 2 1 5 5 C 1.50696 * 109.47131 * 269.99563 * 4 3 2 6 6 H 1.08000 * 120.00279 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00246 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00022 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46982 * 89.99916 * 9 7 5 11 11 H 1.48498 * 109.47468 * 210.00125 * 9 7 5 12 12 H 1.48505 * 109.46928 * 330.00301 * 9 7 5 13 13 C 1.34770 * 120.00015 * 90.00331 * 3 2 1 14 14 O 1.21668 * 119.99992 * 179.97438 * 13 3 2 15 15 C 1.46658 * 120.00138 * 359.97438 * 13 3 2 16 16 C 1.34656 * 120.00224 * 187.67540 * 15 13 3 17 17 C 1.50698 * 120.00059 * 185.92662 * 16 15 13 18 18 C 1.47364 * 119.99893 * 5.92239 * 16 15 13 19 19 C 1.39814 * 120.13638 * 271.27525 * 18 16 15 20 20 N 1.31990 * 119.83319 * 180.02562 * 19 18 16 21 21 C 1.32200 * 120.10572 * 0.02562 * 20 19 18 22 22 C 1.38655 * 120.27076 * 0.25712 * 21 20 19 23 23 N 1.31850 * 120.16609 * 359.47517 * 22 21 20 24 24 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47154 * 299.99510 * 1 2 3 26 26 H 1.09002 * 109.47566 * 59.99884 * 1 2 3 27 27 H 1.09001 * 109.46674 * 240.00604 * 2 1 3 28 28 H 1.08994 * 109.47751 * 120.00410 * 2 1 3 29 29 H 1.08993 * 109.47112 * 30.00453 * 4 3 2 30 30 H 1.09003 * 109.46575 * 150.00149 * 4 3 2 31 31 H 0.96997 * 119.99923 * 180.02562 * 8 7 5 32 32 H 1.08006 * 119.99638 * 7.67436 * 15 13 3 33 33 H 1.09003 * 109.47257 * 269.99971 * 17 16 15 34 34 H 1.09006 * 109.47458 * 30.00163 * 17 16 15 35 35 H 1.09003 * 109.47514 * 149.99977 * 17 16 15 36 36 H 1.08002 * 120.08511 * 0.04476 * 19 18 16 37 37 H 1.07999 * 119.86555 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.91932 * 179.74307 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8352 -1.7038 6 1 4.3426 1.2305 -1.0963 7 6 4.1492 2.3907 -2.8775 8 7 5.3911 2.1838 -3.2575 9 14 3.0131 3.4372 -3.9281 10 1 3.1168 4.8571 -3.5059 11 1 3.4061 3.3151 -5.3549 12 1 1.6133 2.9713 -3.7586 13 6 2.2429 2.0166 1.1671 14 8 2.6489 3.1635 1.1671 15 6 1.9981 1.3254 2.4373 16 6 2.0727 2.0036 3.5982 17 6 1.9537 1.2693 4.9088 18 6 2.2707 3.4638 3.5870 19 6 3.5632 3.9968 3.5727 20 7 3.7337 5.3056 3.5632 21 6 2.6853 6.1109 3.5679 22 6 1.4017 5.5871 3.5880 23 7 1.2189 4.2813 3.5923 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.5815 1.6878 -2.0283 30 1 2.0953 3.1411 -1.1384 31 1 5.7172 2.5749 -4.0830 32 1 1.7579 0.2724 2.4414 33 1 0.9068 1.2302 5.2097 34 1 2.3367 0.2553 4.7933 35 1 2.5317 1.7912 5.6715 36 1 4.4200 3.3392 3.5690 37 1 2.8293 7.1812 3.5606 38 1 0.5493 6.2503 3.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464378349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:01 Heat of formation + Delta-G solvation = 8.250307 kcal Electronic energy + Delta-G solvation = -21310.015257 eV Core-core repulsion = 18152.358906 eV Total energy + Delta-G solvation = -3157.656352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95107 -40.66588 -37.24745 -36.29464 -34.95017 -34.77675 -31.99394 -31.64429 -30.12302 -28.44706 -25.87314 -25.38108 -24.55515 -24.17839 -21.31382 -19.67257 -19.15002 -18.44732 -18.25246 -17.81863 -17.40804 -16.44442 -16.12067 -15.81130 -15.49382 -15.02112 -14.76798 -14.52618 -14.28883 -14.07596 -14.03804 -13.77721 -13.44400 -13.37064 -13.21139 -12.76770 -12.58095 -12.57034 -12.41864 -12.13853 -12.09047 -11.92282 -11.78522 -10.90310 -10.87222 -10.48441 -9.92336 -9.80625 -9.37788 -8.38402 -6.42811 -0.13492 0.18014 0.25458 1.26156 1.30007 1.38575 2.25413 2.29786 2.38260 2.74616 2.95662 3.07853 3.43385 3.65787 3.69971 3.81560 4.08541 4.29930 4.33472 4.40480 4.42967 4.52386 4.54728 4.62340 4.74879 4.80881 4.83720 4.98446 4.98679 5.02418 5.17929 5.37172 5.38972 5.43908 5.50943 5.65597 6.20758 6.34269 6.58145 6.71221 6.84484 7.17731 7.40681 8.78550 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.006293 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.513651 B = 4448.444705 C = 5400.623769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.595 5.595 4 C 0.230 3.770 5 C -0.533 4.533 6 H 0.030 0.970 7 C 0.013 3.987 8 N -0.943 5.943 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.241 1.241 13 C 0.521 3.479 14 O -0.589 6.589 15 C -0.191 4.191 16 C 0.002 3.998 17 C -0.107 4.107 18 C 0.126 3.874 19 C 0.070 3.930 20 N -0.465 5.465 21 C 0.032 3.968 22 C 0.049 3.951 23 N -0.452 5.452 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.010 0.990 31 H 0.269 0.731 32 H 0.178 0.822 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.198 0.802 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 -2.409 16.374 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.325 5.325 4 C 0.108 3.892 5 C -0.571 4.571 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.583 5.583 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.164 1.164 13 C 0.313 3.687 14 O -0.471 6.471 15 C -0.212 4.212 16 C -0.002 4.002 17 C -0.163 4.163 18 C -0.013 4.013 19 C -0.090 4.090 20 N -0.180 5.180 21 C -0.127 4.127 22 C -0.111 4.111 23 N -0.168 5.168 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.195 0.805 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.177 0.823 37 H 0.214 0.786 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.503 -1.804 16.184 20.531 hybrid contribution 0.429 0.761 -1.237 1.514 sum -12.074 -1.043 14.947 19.243 Atomic orbital electron populations 1.22152 0.94100 1.03674 1.01774 1.21834 0.95503 0.81029 1.04125 1.47960 1.63547 1.15292 1.05691 1.19205 0.94829 0.92546 0.82644 1.21529 0.96929 1.32014 1.06645 0.95156 1.25803 0.96659 0.97144 0.98923 1.70038 1.17260 1.46496 1.24505 0.85769 0.80488 0.78882 0.78131 1.20635 1.19528 1.16429 1.19175 0.77696 0.86108 0.85717 1.90742 1.48455 1.20161 1.87744 1.23171 1.06148 1.02390 0.89483 1.21137 0.92712 0.88987 0.97339 1.20983 1.04439 1.00603 0.90308 1.20897 0.90511 0.95365 0.94558 1.23626 0.97409 0.92374 0.95602 1.68301 1.35457 1.04902 1.09300 1.24304 0.89377 1.02427 0.96584 1.24239 0.99329 0.92013 0.95560 1.68534 1.32968 1.05327 1.09980 0.88402 0.92311 0.93962 0.90960 0.87982 0.93709 0.97222 0.92240 0.80482 0.88324 0.87672 0.90511 0.82323 0.78555 0.78038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.24 71.98 0.74 -2.93 16 2 C 0.10 2.87 5.89 86.38 0.51 3.38 16 3 N -0.60 -24.88 2.46 -830.93 -2.04 -26.92 16 4 C 0.23 11.67 4.23 85.63 0.36 12.03 16 5 C -0.53 -32.15 9.94 25.60 0.25 -31.89 16 6 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 7 C 0.01 0.78 5.47 84.65 0.46 1.24 16 8 N -0.94 -60.70 13.96 21.45 0.30 -60.40 16 9 Si 0.94 45.97 27.47 68.60 1.88 47.85 16 10 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 13 C 0.52 21.79 7.53 86.44 0.65 22.44 16 14 O -0.59 -29.86 12.87 -4.25 -0.05 -29.92 16 15 C -0.19 -5.49 8.92 23.65 0.21 -5.28 16 16 C 0.00 0.05 5.67 -18.28 -0.10 -0.06 16 17 C -0.11 -1.62 10.04 71.24 0.72 -0.90 16 18 C 0.13 4.10 4.00 41.72 0.17 4.27 16 19 C 0.07 2.46 9.66 85.05 0.82 3.28 16 20 N -0.47 -16.34 10.49 -193.90 -2.03 -18.38 16 21 C 0.03 0.90 11.22 84.74 0.95 1.85 16 22 C 0.05 1.31 11.22 84.79 0.95 2.27 16 23 N -0.45 -14.53 10.46 -184.66 -1.93 -16.46 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 28 H 0.10 2.33 6.01 -2.39 -0.01 2.32 16 29 H 0.05 2.11 7.13 -2.39 -0.02 2.09 16 30 H 0.01 0.54 6.85 -2.39 -0.02 0.52 16 31 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 32 H 0.18 3.50 6.15 -2.91 -0.02 3.48 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.08 8.08 -2.38 -0.02 1.06 16 35 H 0.08 1.10 8.11 -2.39 -0.02 1.08 16 36 H 0.16 5.30 8.06 -2.91 -0.02 5.28 16 37 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.20 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -85.30 325.99 3.81 -81.49 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.00 Total: 13.04 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.69 Total: 9.70 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -5.71 Total: -122.16 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.05 Total: -29.92 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -85.30 3.81 -81.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464378349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.741 kcal (2) G-P(sol) polarization free energy of solvation -85.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds