Wall clock time and date at job start Mon Mar 30 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46842 * 175.54044 * 3 2 1 5 5 C 1.37090 * 120.00278 * 94.93563 * 4 3 2 6 6 H 1.08005 * 120.00743 * 164.16015 * 5 4 3 7 7 C 1.38959 * 119.99743 * 344.15328 * 5 4 3 8 8 N 1.31406 * 119.99970 * 332.24133 * 7 5 4 9 9 Si 1.86802 * 119.99992 * 152.23971 * 7 5 4 10 10 H 1.48497 * 109.47002 * 94.98965 * 9 7 5 11 11 H 1.48495 * 109.46931 * 214.99296 * 9 7 5 12 12 H 1.48503 * 109.46919 * 334.99051 * 9 7 5 13 13 C 1.34784 * 120.00149 * 274.93046 * 4 3 2 14 14 O 1.21290 * 119.99919 * 183.20373 * 13 4 3 15 15 C 1.50703 * 119.99733 * 3.20493 * 13 4 3 16 16 H 1.09000 * 109.47466 * 334.17106 * 15 13 4 17 17 C 1.53000 * 109.46926 * 94.17240 * 15 13 4 18 18 C 1.53002 * 109.46994 * 214.16696 * 15 13 4 19 19 C 1.50698 * 109.47065 * 175.00144 * 18 15 13 20 20 C 1.39867 * 126.03880 * 269.69570 * 19 18 15 21 21 N 1.30839 * 108.20212 * 179.81905 * 20 19 18 22 22 N 1.40085 * 108.20574 * 0.43447 * 21 20 19 23 23 C 1.46501 * 126.03958 * 179.69974 * 22 21 20 24 24 C 1.34953 * 107.92188 * 359.72265 * 22 21 20 25 25 H 4.40641 * 5.51455 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.46825 * 55.54342 * 3 2 1 27 27 H 1.08988 * 109.47325 * 295.54035 * 3 2 1 28 28 H 0.97002 * 120.00407 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47183 * 307.94310 * 17 15 13 30 30 H 1.08999 * 109.47275 * 67.94607 * 17 15 13 31 31 H 1.08999 * 109.47121 * 187.94730 * 17 15 13 32 32 H 1.08997 * 109.46643 * 55.00400 * 18 15 13 33 33 H 1.08998 * 109.47125 * 295.00359 * 18 15 13 34 34 H 1.08001 * 125.90127 * 359.97438 * 20 19 18 35 35 H 1.09001 * 109.46633 * 270.02830 * 23 22 21 36 36 H 1.08995 * 109.46762 * 30.02466 * 23 22 21 37 37 H 1.09002 * 109.46696 * 150.02712 * 23 22 21 38 38 H 1.08001 * 126.12282 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3779 -0.1074 5 6 3.4581 2.0805 1.0242 6 1 4.0487 2.9817 0.9498 7 6 3.0270 1.6331 2.2672 8 7 1.9245 0.9248 2.3644 9 14 4.0149 2.0386 3.7999 10 1 3.4578 3.2573 4.4399 11 1 3.9405 0.9014 4.7519 12 1 5.4318 2.2794 3.4262 13 6 3.2634 1.9544 -1.3188 14 8 3.7218 3.0735 -1.4119 15 6 2.8390 1.2084 -2.5576 16 1 2.8952 0.1357 -2.3729 17 6 1.4010 1.5898 -2.9149 18 6 3.7671 1.5757 -3.7171 19 6 3.4207 0.7395 -4.9221 20 6 3.9705 -0.5052 -5.2456 21 7 3.4194 -0.9188 -6.3579 22 7 2.5074 0.0558 -6.7832 23 6 1.6792 -0.0070 -7.9900 24 6 2.5269 1.0629 -5.8852 25 1 -1.0502 -0.0004 -0.0002 26 1 3.0095 -0.5806 -0.8474 27 1 3.0095 -0.4422 0.9271 28 1 1.6237 0.6122 3.2320 29 1 0.7629 1.4603 -2.0408 30 1 1.3704 2.6309 -3.2361 31 1 1.0454 0.9498 -3.7224 32 1 4.8011 1.3865 -3.4287 33 1 3.6450 2.6312 -3.9600 34 1 4.7187 -1.0348 -4.6744 35 1 2.2189 0.4403 -8.8247 36 1 1.4515 -1.0477 -8.2206 37 1 0.7511 0.5395 -7.8225 38 1 1.9349 1.9652 -5.9274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518674993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:49 Heat of formation + Delta-G solvation = 109.308603 kcal Electronic energy + Delta-G solvation = -21153.396630 eV Core-core repulsion = 18000.122495 eV Total energy + Delta-G solvation = -3153.274135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11940 -38.82683 -35.34795 -34.44262 -32.90153 -31.98501 -31.16073 -29.86492 -27.61968 -26.50362 -25.41839 -24.81496 -22.24363 -20.93964 -20.00833 -18.41388 -17.77750 -16.79440 -16.46316 -16.16228 -15.43289 -14.62393 -14.45718 -14.30640 -14.06506 -13.62884 -13.20870 -13.10886 -12.84689 -12.57628 -12.50241 -12.22995 -11.96239 -11.70175 -11.57933 -11.26720 -10.98254 -10.72287 -10.61987 -10.49131 -10.25320 -10.11349 -9.33786 -9.26702 -9.15585 -8.85668 -8.32510 -8.10030 -7.80922 -6.32033 -3.76850 1.96394 2.57055 2.93300 3.17211 3.28715 3.35821 3.74122 3.97071 4.09499 4.23183 4.50407 4.92626 4.96178 4.98818 5.06815 5.17631 5.23265 5.40252 5.49479 5.62241 5.68578 5.81230 5.91153 5.97704 6.10361 6.33349 6.37995 6.43546 6.52378 6.66143 6.73200 6.80947 6.84621 7.03683 7.08648 7.61257 7.77656 8.12115 8.48311 8.84009 9.20050 9.43220 10.00094 10.69292 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.004462 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.763097 B = 6274.190983 C = 6642.984150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.110 4.110 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.322 4.322 6 H 0.104 0.896 7 C 0.035 3.965 8 N -0.853 5.853 9 Si 0.910 3.090 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.585 6.585 15 C -0.097 4.097 16 H 0.078 0.922 17 C -0.133 4.133 18 C -0.023 4.023 19 C -0.218 4.218 20 C 0.052 3.948 21 N -0.304 5.304 22 N -0.383 5.383 23 C 0.105 3.895 24 C 0.053 3.947 25 H 0.198 0.802 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.267 0.733 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.182 0.818 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 -4.543 -14.097 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.112 4.112 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.449 4.449 6 H 0.122 0.878 7 C -0.170 4.170 8 N -0.490 5.490 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.245 3.755 14 O -0.469 6.469 15 C -0.119 4.119 16 H 0.096 0.904 17 C -0.191 4.191 18 C -0.062 4.062 19 C -0.230 4.230 20 C -0.134 4.134 21 N -0.126 5.126 22 N -0.166 5.166 23 C -0.037 4.037 24 C -0.092 4.092 25 H 0.215 0.785 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.199 0.801 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.919 -5.016 -14.975 15.909 hybrid contribution -0.121 0.726 1.611 1.772 sum -2.040 -4.290 -13.364 14.183 Atomic orbital electron populations 1.24212 0.95313 1.02264 1.06080 1.23137 0.94313 0.98152 0.95589 1.18262 0.84387 0.85124 1.01581 1.43742 1.56068 1.10589 1.05385 1.19602 1.31920 1.10624 0.82712 0.87788 1.25208 0.95040 0.97656 0.99098 1.70181 1.17103 1.36345 1.25385 0.86188 0.80902 0.77962 0.81309 1.20603 1.20862 1.19305 1.20076 0.84061 0.86983 0.84345 1.90499 1.49733 1.20300 1.86386 1.21169 0.96450 1.00396 0.93895 0.90398 1.21680 0.95117 1.00789 1.01479 1.19736 0.98779 0.98259 0.89390 1.20221 1.03627 0.98498 1.00621 1.23834 0.99917 0.95377 0.94289 1.77289 1.06826 1.13059 1.15415 1.48395 1.33166 1.14884 1.20187 1.21776 0.93482 1.04343 0.84105 1.22335 1.01105 0.94583 0.91211 0.78521 0.91504 0.87942 0.92283 0.91866 0.92859 0.93016 0.91191 0.90663 0.80125 0.91117 0.89586 0.89683 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.32 18.52 29.55 0.55 -4.78 16 2 C -0.11 -2.44 10.09 -37.12 -0.37 -2.81 16 3 C 0.23 5.05 4.86 -6.83 -0.03 5.01 16 4 N -0.44 -11.00 2.60 -117.93 -0.31 -11.31 16 5 C -0.32 -8.84 9.31 -14.93 -0.14 -8.98 16 6 H 0.10 3.03 7.39 -52.48 -0.39 2.64 16 7 C 0.03 0.91 4.70 -17.47 -0.08 0.83 16 8 N -0.85 -22.38 9.80 55.50 0.54 -21.83 16 9 Si 0.91 20.33 29.63 -169.99 -5.04 15.29 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 13 C 0.46 10.89 6.57 -10.98 -0.07 10.82 16 14 O -0.58 -15.92 15.99 5.55 0.09 -15.83 16 15 C -0.10 -1.79 2.09 -91.77 -0.19 -1.98 16 16 H 0.08 1.37 5.76 -51.93 -0.30 1.07 16 17 C -0.13 -2.29 8.63 37.16 0.32 -1.97 16 18 C -0.02 -0.36 4.74 -27.88 -0.13 -0.50 16 19 C -0.22 -3.09 4.83 -105.06 -0.51 -3.60 16 20 C 0.05 0.72 11.96 -17.37 -0.21 0.51 16 21 N -0.30 -4.38 12.58 30.62 0.39 -3.99 16 22 N -0.38 -4.67 4.01 -68.16 -0.27 -4.94 16 23 C 0.10 0.78 11.47 59.85 0.69 1.46 16 24 C 0.05 0.66 10.25 -17.22 -0.18 0.48 16 25 H 0.20 3.31 7.80 -54.08 -0.42 2.89 16 26 H 0.07 1.24 6.07 -51.93 -0.32 0.92 16 27 H 0.10 2.36 6.58 -51.94 -0.34 2.02 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.06 1.22 6.02 -51.93 -0.31 0.90 16 30 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.05 0.77 6.93 -51.93 -0.36 0.41 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 34 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -33.11 323.63 -5.03 -38.14 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.95 Total: 5.09 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.36 Total: -5.49 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.35 Total: -42.07 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.09 Total: -15.83 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.04 Total: 15.29 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.11 -5.03 -38.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518674993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.445 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds