Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46842 * 175.54044 * 3 2 1 5 5 C 1.37090 * 120.00278 * 94.93563 * 4 3 2 6 6 H 1.08005 * 120.00743 * 164.16015 * 5 4 3 7 7 C 1.38959 * 119.99743 * 344.15328 * 5 4 3 8 8 N 1.31406 * 119.99970 * 332.24133 * 7 5 4 9 9 Si 1.86802 * 119.99992 * 152.23971 * 7 5 4 10 10 H 1.48497 * 109.47002 * 94.98965 * 9 7 5 11 11 H 1.48495 * 109.46931 * 214.99296 * 9 7 5 12 12 H 1.48503 * 109.46919 * 334.99051 * 9 7 5 13 13 C 1.34784 * 120.00149 * 274.93046 * 4 3 2 14 14 O 1.21290 * 119.99919 * 183.20373 * 13 4 3 15 15 C 1.50703 * 119.99733 * 3.20493 * 13 4 3 16 16 H 1.09000 * 109.47466 * 334.17106 * 15 13 4 17 17 C 1.53000 * 109.46926 * 94.17240 * 15 13 4 18 18 C 1.53002 * 109.46994 * 214.16696 * 15 13 4 19 19 C 1.50698 * 109.47065 * 175.00144 * 18 15 13 20 20 C 1.39867 * 126.03880 * 269.69570 * 19 18 15 21 21 N 1.30839 * 108.20212 * 179.81905 * 20 19 18 22 22 N 1.40085 * 108.20574 * 0.43447 * 21 20 19 23 23 C 1.46501 * 126.03958 * 179.69974 * 22 21 20 24 24 C 1.34953 * 107.92188 * 359.72265 * 22 21 20 25 25 H 4.40641 * 5.51455 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.46825 * 55.54342 * 3 2 1 27 27 H 1.08988 * 109.47325 * 295.54035 * 3 2 1 28 28 H 0.97002 * 120.00407 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47183 * 307.94310 * 17 15 13 30 30 H 1.08999 * 109.47275 * 67.94607 * 17 15 13 31 31 H 1.08999 * 109.47121 * 187.94730 * 17 15 13 32 32 H 1.08997 * 109.46643 * 55.00400 * 18 15 13 33 33 H 1.08998 * 109.47125 * 295.00359 * 18 15 13 34 34 H 1.08001 * 125.90127 * 359.97438 * 20 19 18 35 35 H 1.09001 * 109.46633 * 270.02830 * 23 22 21 36 36 H 1.08995 * 109.46762 * 30.02466 * 23 22 21 37 37 H 1.09002 * 109.46696 * 150.02712 * 23 22 21 38 38 H 1.08001 * 126.12282 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3779 -0.1074 5 6 3.4581 2.0805 1.0242 6 1 4.0487 2.9817 0.9498 7 6 3.0270 1.6331 2.2672 8 7 1.9245 0.9248 2.3644 9 14 4.0149 2.0386 3.7999 10 1 3.4578 3.2573 4.4399 11 1 3.9405 0.9014 4.7519 12 1 5.4318 2.2794 3.4262 13 6 3.2634 1.9544 -1.3188 14 8 3.7218 3.0735 -1.4119 15 6 2.8390 1.2084 -2.5576 16 1 2.8952 0.1357 -2.3729 17 6 1.4010 1.5898 -2.9149 18 6 3.7671 1.5757 -3.7171 19 6 3.4207 0.7395 -4.9221 20 6 3.9705 -0.5052 -5.2456 21 7 3.4194 -0.9188 -6.3579 22 7 2.5074 0.0558 -6.7832 23 6 1.6792 -0.0070 -7.9900 24 6 2.5269 1.0629 -5.8852 25 1 -1.0502 -0.0004 -0.0002 26 1 3.0095 -0.5806 -0.8474 27 1 3.0095 -0.4422 0.9271 28 1 1.6237 0.6122 3.2320 29 1 0.7629 1.4603 -2.0408 30 1 1.3704 2.6309 -3.2361 31 1 1.0454 0.9498 -3.7224 32 1 4.8011 1.3865 -3.4287 33 1 3.6450 2.6312 -3.9600 34 1 4.7187 -1.0348 -4.6744 35 1 2.2189 0.4403 -8.8247 36 1 1.4515 -1.0477 -8.2206 37 1 0.7511 0.5395 -7.8225 38 1 1.9349 1.9652 -5.9274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518674993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = 89.155534 kcal Electronic energy + Delta-G solvation = -21154.270533 eV Core-core repulsion = 18000.122495 eV Total energy + Delta-G solvation = -3154.148038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11559 -40.62192 -37.14754 -35.91963 -34.08637 -33.61166 -32.96967 -31.02792 -28.58973 -28.30557 -26.86216 -26.31529 -23.78944 -21.87922 -21.13905 -20.05421 -19.59717 -18.30270 -18.17309 -17.39830 -16.59460 -16.27887 -15.99589 -15.86094 -15.28509 -15.02565 -14.71894 -14.42285 -14.08643 -13.84664 -13.68371 -13.58555 -13.44539 -13.11753 -13.03225 -12.80792 -12.69920 -12.45572 -12.14869 -12.05506 -11.83055 -11.37062 -11.08355 -10.96295 -10.58274 -10.27670 -10.11645 -9.78733 -9.20090 -8.31274 -5.83958 1.00699 1.36736 1.44648 1.57339 1.76900 1.86992 1.97165 2.21828 2.36797 2.43823 3.06639 3.26552 3.73265 3.87654 3.99300 4.08483 4.18203 4.32894 4.40558 4.48117 4.49651 4.64497 4.72984 4.74694 4.84449 4.92193 4.96486 4.98489 5.04470 5.27666 5.36403 5.45080 5.46915 5.52847 5.76808 6.11885 6.21279 6.50234 6.79609 7.19292 7.21502 7.50131 8.08732 8.67981 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.004462 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.763097 B = 6274.190983 C = 6642.984150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.149 4.149 3 C 0.232 3.768 4 N -0.452 5.452 5 C -0.360 4.360 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.863 5.863 9 Si 0.973 3.027 10 H -0.281 1.281 11 H -0.268 1.268 12 H -0.272 1.272 13 C 0.446 3.554 14 O -0.630 6.630 15 C -0.084 4.084 16 H 0.088 0.912 17 C -0.123 4.123 18 C -0.009 4.009 19 C -0.240 4.240 20 C 0.044 3.956 21 N -0.331 5.331 22 N -0.381 5.381 23 C 0.094 3.906 24 C 0.064 3.936 25 H 0.231 0.769 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.271 0.729 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.194 0.806 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 -5.433 -15.103 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.151 4.151 3 C 0.110 3.890 4 N -0.169 5.169 5 C -0.488 4.488 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.499 5.499 9 Si 0.797 3.203 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.197 1.197 13 C 0.237 3.763 14 O -0.517 6.517 15 C -0.106 4.106 16 H 0.106 0.894 17 C -0.181 4.181 18 C -0.048 4.048 19 C -0.251 4.251 20 C -0.141 4.141 21 N -0.153 5.153 22 N -0.163 5.163 23 C -0.046 4.046 24 C -0.083 4.083 25 H 0.247 0.753 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.210 0.790 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.267 -5.951 -16.001 17.381 hybrid contribution 0.212 1.023 1.867 2.140 sum -3.056 -4.929 -14.133 15.277 Atomic orbital electron populations 1.25039 0.96231 1.00462 1.04412 1.23315 0.94812 0.99775 0.97157 1.18295 0.84907 0.83736 1.02090 1.43934 1.56130 1.11633 1.05214 1.19486 1.33483 1.11114 0.84684 0.90855 1.25850 0.95424 0.97266 1.00994 1.70247 1.17331 1.36143 1.26187 0.85255 0.79113 0.77985 0.77926 1.20688 1.19280 1.19664 1.21074 0.82766 0.86863 0.85601 1.90455 1.51533 1.22480 1.87228 1.21121 0.97643 0.99949 0.91872 0.89405 1.21603 0.93615 1.01417 1.01427 1.19499 0.97734 0.98054 0.89541 1.20007 1.05495 0.98844 1.00760 1.24083 1.00191 0.95422 0.94401 1.77250 1.07912 1.14331 1.15791 1.48777 1.32568 1.14054 1.20916 1.22176 0.94162 1.05406 0.82886 1.22706 1.00176 0.95085 0.90358 0.75272 0.88425 0.89610 0.91881 0.93930 0.92926 0.90111 0.92118 0.91706 0.78953 0.89600 0.89125 0.86984 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.50 18.52 74.32 1.38 -8.12 16 2 C -0.15 -6.47 10.09 31.13 0.31 -6.15 16 3 C 0.23 10.23 4.86 84.58 0.41 10.64 16 4 N -0.45 -23.17 2.60 -645.41 -1.68 -24.84 16 5 C -0.36 -20.50 9.31 84.04 0.78 -19.71 16 6 H 0.07 4.52 7.39 -2.91 -0.02 4.50 16 7 C 0.01 0.48 4.70 84.93 0.40 0.88 16 8 N -0.86 -45.10 9.80 21.67 0.21 -44.89 16 9 Si 0.97 42.09 29.63 68.60 2.03 44.13 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 C 0.45 21.84 6.57 87.66 0.58 22.42 16 14 O -0.63 -35.71 15.99 -3.06 -0.05 -35.75 16 15 C -0.08 -3.06 2.09 -11.54 -0.02 -3.08 16 16 H 0.09 2.99 5.76 -2.39 -0.01 2.98 16 17 C -0.12 -4.05 8.63 71.98 0.62 -3.43 16 18 C -0.01 -0.29 4.74 29.85 0.14 -0.15 16 19 C -0.24 -6.41 4.83 -20.15 -0.10 -6.51 16 20 C 0.04 1.16 11.96 85.24 1.02 2.18 16 21 N -0.33 -8.92 12.58 -57.02 -0.72 -9.64 16 22 N -0.38 -8.23 4.01 -369.56 -1.48 -9.71 16 23 C 0.09 1.08 11.47 127.77 1.47 2.55 16 24 C 0.06 1.41 10.25 83.54 0.86 2.26 16 25 H 0.23 7.00 7.80 -4.41 -0.03 6.97 16 26 H 0.10 3.57 6.07 -2.39 -0.01 3.55 16 27 H 0.09 4.01 6.58 -2.39 -0.02 3.99 16 28 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 29 H 0.04 1.58 6.02 -2.39 -0.01 1.56 16 30 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.08 2.18 6.93 -2.39 -0.02 2.16 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 34 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -72.88 323.63 7.22 -65.66 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 1.06 Total: 21.27 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 7.84 Total: -6.23 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -3.66 Total: -89.08 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.05 Total: -35.75 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.13 kcal Total: -72.88 7.22 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518674993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.818 kcal (2) G-P(sol) polarization free energy of solvation -72.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds