Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99912 * 2 1 4 4 C 1.53785 * 113.61250 * 204.99818 * 3 2 1 5 5 C 1.53786 * 87.07888 * 220.01877 * 4 3 2 6 6 C 1.50707 * 113.61119 * 139.98034 * 5 4 3 7 7 O 1.21267 * 120.00003 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99811 * 179.97438 * 6 5 4 9 9 C 1.39260 * 119.99923 * 185.58392 * 8 6 5 10 10 C 1.39667 * 119.57907 * 18.83113 * 9 8 6 11 11 C 1.38658 * 119.50177 * 180.02562 * 10 9 8 12 12 C 1.38346 * 118.66468 * 359.97438 * 11 10 9 13 13 C 1.40570 * 119.13295 * 0.02562 * 12 11 10 14 14 C 1.41344 * 119.79081 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99513 * 8.93468 * 14 13 12 16 16 C 1.40023 * 120.00202 * 188.92917 * 14 13 12 17 17 N 1.30737 * 119.99734 * 196.07218 * 16 14 13 18 18 Si 1.86796 * 120.00077 * 16.07228 * 16 14 13 19 19 H 1.48492 * 109.47333 * 269.99813 * 18 16 14 20 20 H 1.48505 * 109.47045 * 29.99890 * 18 16 14 21 21 H 1.48498 * 109.47311 * 149.99634 * 18 16 14 22 22 N 1.31910 * 119.57447 * 199.13209 * 9 8 6 23 23 C 1.53777 * 87.08354 * 25.43490 * 5 4 3 24 24 H 1.09004 * 109.47121 * 60.00152 * 1 2 3 25 25 H 1.08996 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47406 * 299.99832 * 1 2 3 27 27 H 1.00891 * 111.00013 * 236.04359 * 2 1 3 28 28 H 1.08992 * 112.91111 * 336.25400 * 3 2 1 29 29 H 1.08997 * 113.61373 * 105.47269 * 4 3 2 30 30 H 1.08995 * 113.61395 * 334.56498 * 4 3 2 31 31 H 1.08997 * 113.61748 * 270.80053 * 5 4 3 32 32 H 0.96996 * 119.99948 * 5.58649 * 8 6 5 33 33 H 1.08001 * 120.25059 * 0.04352 * 10 9 8 34 34 H 1.07998 * 120.66421 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.43247 * 180.02562 * 12 11 10 36 36 H 0.96999 * 120.00887 * 354.92880 * 17 16 14 37 37 H 1.09000 * 113.62042 * 89.11088 * 23 5 4 38 38 H 1.09000 * 113.61741 * 220.02188 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4085 1.4889 -0.5955 5 6 3.7137 2.4925 0.5291 6 6 5.0914 2.3368 1.1196 7 8 5.8381 1.4790 0.6986 8 7 5.4940 3.1515 2.1148 9 6 6.8045 3.0859 2.5813 10 6 7.7888 2.4890 1.7904 11 6 9.0930 2.4241 2.2566 12 6 9.3805 2.9575 3.5004 13 6 8.3458 3.5451 4.2487 14 6 8.6237 4.0938 5.5213 15 1 9.6461 4.1921 5.8553 16 6 7.5737 4.5100 6.3489 17 7 7.8155 5.2917 7.3685 18 14 5.8275 3.9483 5.9961 19 1 5.1682 4.9216 5.0889 20 1 5.8585 2.6117 5.3497 21 1 5.0676 3.8649 7.2691 22 7 7.0992 3.5831 3.7671 23 6 2.6119 1.7947 1.3439 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8306 -0.5261 -0.7813 28 1 1.2896 2.0969 -0.4043 29 1 3.4271 1.9305 -1.5918 30 1 3.9884 0.5684 -0.5284 31 1 3.4788 3.5246 0.2689 32 1 4.8709 3.7835 2.5062 33 1 7.5360 2.0813 0.8227 34 1 9.8688 1.9664 1.6608 35 1 10.3867 2.9228 3.8912 36 1 8.7295 5.5239 7.5958 37 1 2.9739 0.9578 1.9410 38 1 1.9873 2.4832 1.9131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522458732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -8.080008 kcal Electronic energy + Delta-G solvation = -20793.848312 eV Core-core repulsion = 17635.483824 eV Total energy + Delta-G solvation = -3158.364487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91080 -40.40045 -38.96729 -36.23750 -35.37158 -34.90985 -32.95725 -31.44459 -27.96263 -27.11964 -26.65486 -25.29782 -23.64672 -23.25446 -21.46378 -20.59054 -20.19979 -18.88555 -18.13923 -16.99029 -16.82498 -16.65358 -16.23057 -16.10342 -15.78117 -15.47483 -15.01423 -14.53682 -14.47955 -14.27816 -14.02174 -13.73520 -13.41767 -13.06602 -12.93963 -12.78781 -12.63610 -12.18237 -12.03384 -11.86101 -11.74031 -11.56615 -11.33985 -11.04675 -10.63214 -10.38147 -9.85709 -9.36496 -9.32582 -9.20750 -6.80486 0.50717 0.75995 1.50772 1.53872 1.73200 1.87897 2.01418 2.39984 2.62752 3.27458 3.50302 3.51463 3.57537 3.80030 3.86197 4.06346 4.13542 4.43506 4.48725 4.58436 4.67451 4.68454 4.69897 4.78963 4.82405 4.88085 5.02784 5.08170 5.14689 5.29686 5.36608 5.40210 5.45151 5.72408 5.82536 5.95579 6.17697 6.31583 6.43342 6.47536 6.65499 7.08878 7.53304 7.92640 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.004765 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.972379 B = 5875.246591 C = 6846.904856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.701 5.701 3 C 0.071 3.929 4 C -0.115 4.115 5 C -0.128 4.128 6 C 0.525 3.475 7 O -0.546 6.546 8 N -0.652 5.652 9 C 0.372 3.628 10 C -0.310 4.310 11 C -0.031 4.031 12 C -0.296 4.296 13 C 0.257 3.743 14 C -0.513 4.513 15 H 0.069 0.931 16 C 0.023 3.977 17 N -0.824 5.824 18 Si 1.174 2.826 19 H -0.270 1.270 20 H -0.294 1.294 21 H -0.320 1.320 22 N -0.608 5.608 23 C -0.115 4.115 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.349 0.651 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.419 0.581 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.282 0.718 37 H 0.068 0.932 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 -5.042 -15.505 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.333 5.333 3 C -0.039 4.039 4 C -0.154 4.154 5 C -0.150 4.150 6 C 0.315 3.685 7 O -0.422 6.422 8 N -0.298 5.298 9 C 0.140 3.860 10 C -0.335 4.335 11 C -0.055 4.055 12 C -0.318 4.318 13 C 0.132 3.868 14 C -0.546 4.546 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.447 5.447 18 Si 1.004 2.996 19 H -0.196 1.196 20 H -0.223 1.223 21 H -0.252 1.252 22 N -0.333 5.333 23 C -0.154 4.154 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.168 0.832 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.168 0.832 32 H 0.256 0.744 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.577 -5.119 -14.124 22.372 hybrid contribution 2.721 0.216 -0.999 2.906 sum -13.856 -4.903 -15.123 21.089 Atomic orbital electron populations 1.22268 0.86804 1.02397 1.00753 1.60435 1.08919 1.13474 1.50433 1.22964 0.94593 0.90589 0.95757 1.23099 0.95766 0.98859 0.97656 1.22794 0.88702 1.03819 0.99639 1.21415 0.90189 0.79031 0.77913 1.90575 1.56041 1.34348 1.61269 1.43481 1.10049 1.39635 1.36602 1.18532 0.85369 0.93028 0.89057 1.21867 0.93011 1.14453 1.04127 1.21325 0.96113 0.93899 0.94158 1.21775 0.99810 1.11377 0.98820 1.18391 0.86510 0.88559 0.93303 1.20660 0.95988 1.37976 0.99944 0.91294 1.28412 1.10407 0.89457 0.91237 1.70630 1.25349 1.22818 1.25927 0.81733 0.68541 0.77352 0.71965 1.19640 1.22262 1.25198 1.66194 1.22141 1.31293 1.13695 1.23061 0.95244 0.99617 0.97442 0.94782 0.91018 0.91919 0.83156 0.88165 0.88859 0.90123 0.83181 0.74423 0.83532 0.84010 0.86797 0.90687 0.91327 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.54 127.69 1.35 1.67 16 2 N -0.70 -11.05 6.91 -511.85 -3.54 -14.59 16 3 C 0.07 1.05 4.14 45.45 0.19 1.24 16 4 C -0.12 -2.02 6.98 31.12 0.22 -1.80 16 5 C -0.13 -2.51 4.15 -11.01 -0.05 -2.56 16 6 C 0.53 16.47 7.20 87.66 0.63 17.10 16 7 O -0.55 -20.85 12.70 -2.99 -0.04 -20.89 16 8 N -0.65 -23.23 5.41 -308.38 -1.67 -24.90 16 9 C 0.37 16.94 7.51 133.25 1.00 17.94 16 10 C -0.31 -13.80 8.83 22.72 0.20 -13.60 16 11 C -0.03 -1.33 10.15 22.40 0.23 -1.10 16 12 C -0.30 -14.31 9.83 22.86 0.22 -14.08 16 13 C 0.26 13.86 6.27 40.19 0.25 14.11 16 14 C -0.51 -29.01 9.51 23.47 0.22 -28.79 16 15 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 16 C 0.02 1.25 5.51 85.29 0.47 1.72 16 17 N -0.82 -45.80 13.65 21.84 0.30 -45.50 16 18 Si 1.17 56.37 25.93 68.60 1.78 58.15 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -14.71 6.55 99.48 0.65 -14.06 16 21 H -0.32 -14.84 7.11 99.48 0.71 -14.13 16 22 N -0.61 -31.01 5.06 -186.36 -0.94 -31.95 16 23 C -0.11 -2.15 7.43 31.12 0.23 -1.92 16 24 H 0.03 0.32 8.13 -2.39 -0.02 0.30 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.35 4.84 8.63 -89.70 -0.77 4.07 16 28 H 0.10 1.07 7.87 -2.39 -0.02 1.05 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.85 7.43 -2.39 -0.02 1.83 16 31 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.42 12.78 8.83 -92.71 -0.82 11.96 16 33 H 0.15 6.30 5.33 -3.18 -0.02 6.29 16 34 H 0.14 5.00 8.06 -2.91 -0.02 4.97 16 35 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 36 H 0.28 15.20 8.73 -92.71 -0.81 14.39 16 37 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.01 316.40 0.46 -67.55 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -0.60 Total: 22.21 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.17 Total: -10.08 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -5.85 Total: -116.94 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.04 Total: -20.89 kcal Atomic # 14 Polarization: 56.37 SS G_CDS: 1.78 Total: 58.15 kcal Total: -68.01 0.46 -67.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522458732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.473 kcal (2) G-P(sol) polarization free energy of solvation -68.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds