Wall clock time and date at job start Mon Mar 30 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33018 * 1 3 3 C 1.50702 * 120.00039 * 2 1 4 4 N 1.46895 * 109.47138 * 95.00128 * 3 2 1 5 5 C 1.46905 * 110.99813 * 169.99967 * 4 3 2 6 6 C 1.46903 * 111.00028 * 293.95469 * 4 3 2 7 7 C 1.47056 * 120.00024 * 180.02562 * 2 1 3 8 8 O 1.21610 * 120.00043 * 359.97438 * 7 2 1 9 9 N 1.34783 * 119.99993 * 180.27192 * 7 2 1 10 10 C 1.39365 * 120.00040 * 175.05426 * 9 7 2 11 11 C 1.38624 * 119.58186 * 186.37643 * 10 9 7 12 12 C 1.40802 * 118.79309 * 180.02562 * 11 10 9 13 13 C 1.41545 * 120.99845 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00025 * 201.20542 * 13 12 11 15 15 C 1.40031 * 119.99482 * 21.19959 * 13 12 11 16 16 N 1.30732 * 120.00249 * 12.64520 * 15 13 12 17 17 Si 1.86803 * 119.99530 * 192.64208 * 15 13 12 18 18 H 1.48501 * 109.46843 * 90.00432 * 17 15 13 19 19 H 1.48506 * 109.47175 * 210.00001 * 17 15 13 20 20 H 1.48493 * 109.47339 * 330.00426 * 17 15 13 21 21 C 1.41179 * 118.00806 * 0.02562 * 12 11 10 22 22 C 1.37588 * 119.02186 * 359.97438 * 21 12 11 23 23 N 1.32082 * 121.11067 * 359.72876 * 22 21 12 24 24 H 1.08000 * 120.00285 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00121 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47026 * 214.99961 * 3 2 1 27 27 H 1.08999 * 109.47019 * 334.99728 * 3 2 1 28 28 H 1.09002 * 109.46869 * 60.00343 * 5 4 3 29 29 H 1.09000 * 109.46926 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47002 * 299.99932 * 5 4 3 31 31 H 1.08997 * 109.46798 * 60.00035 * 6 4 3 32 32 H 1.08998 * 109.46831 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.46854 * 299.99610 * 6 4 3 34 34 H 0.96996 * 119.99922 * 355.06345 * 9 7 2 35 35 H 1.07994 * 120.60538 * 0.02678 * 11 10 9 36 36 H 0.97002 * 120.00009 * 179.97438 * 16 15 13 37 37 H 1.08006 * 120.49055 * 179.97438 * 21 12 11 38 38 H 1.07998 * 119.44318 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0837 1.3051 0.0000 4 7 2.4331 1.6688 1.3797 5 6 3.3665 2.8029 1.4048 6 6 1.2286 1.9607 2.1683 7 6 2.0655 -1.2735 -0.0006 8 8 1.4574 -2.3267 -0.0006 9 7 3.4133 -1.2735 0.0050 10 6 4.1097 -2.4763 0.1085 11 6 5.4889 -2.4587 0.2471 12 6 6.1758 -3.6835 0.3497 13 6 7.5836 -3.7201 0.4920 14 1 8.1297 -4.6147 0.2313 15 6 8.2682 -2.5963 0.9709 16 7 7.6053 -1.6102 1.5161 17 14 10.1288 -2.5063 0.8304 18 1 10.4976 -1.8724 -0.4608 19 1 10.6713 -1.6975 1.9516 20 1 10.6965 -3.8771 0.8889 21 6 5.4184 -4.8742 0.3052 22 6 4.0522 -4.7913 0.1652 23 7 3.4447 -3.6217 0.0781 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.9944 1.1988 -0.5894 27 1 1.4588 2.0854 -0.4344 28 1 2.9045 3.6644 0.9226 29 1 3.6089 3.0511 2.4381 30 1 4.2789 2.5344 0.8724 31 1 0.5869 1.0799 2.1908 32 1 1.5159 2.2266 3.1855 33 1 0.6893 2.7917 1.7137 34 1 3.8985 -0.4364 -0.0630 35 1 6.0267 -1.5227 0.2758 36 1 8.0796 -0.8319 1.8481 37 1 5.9043 -5.8358 0.3800 38 1 3.4662 -5.6979 0.1300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635568575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:58 Heat of formation + Delta-G solvation = 32.396353 kcal Electronic energy + Delta-G solvation = -20973.414668 eV Core-core repulsion = 17816.805368 eV Total energy + Delta-G solvation = -3156.609301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.70056 -38.09823 -37.21237 -34.31803 -33.65632 -33.08083 -30.45798 -28.62153 -27.65918 -26.94446 -25.96311 -23.55149 -22.04554 -21.82244 -20.55775 -18.69754 -17.62108 -16.86470 -15.78029 -15.59519 -15.41144 -15.01022 -14.49320 -14.20711 -14.13503 -14.08538 -13.64157 -13.22250 -12.74009 -12.58360 -12.46556 -12.26762 -12.22857 -11.78984 -11.75221 -11.40250 -11.20446 -11.16347 -10.86076 -10.24071 -10.06407 -9.70749 -9.42027 -9.37805 -9.30589 -8.40649 -7.94887 -7.67133 -6.92817 -6.70565 -4.58684 1.54529 2.76314 2.85121 3.02909 3.06531 3.29552 3.72200 3.84128 3.86988 4.15700 4.73751 4.74401 4.88880 5.11170 5.17281 5.26110 5.41412 5.50003 5.55747 5.73251 5.76628 5.84619 5.85131 6.05042 6.31848 6.44322 6.66531 6.76157 6.86814 6.89528 6.93311 7.01035 7.20885 7.47028 7.54590 7.85917 8.03676 8.29418 8.49474 8.76258 8.80205 9.00235 9.77533 10.10514 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.005471 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.429645 B = 5117.053437 C = 6519.625433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.159 4.159 3 C 0.088 3.912 4 N -0.540 5.540 5 C 0.025 3.975 6 C 0.022 3.978 7 C 0.541 3.459 8 O -0.488 6.488 9 N -0.645 5.645 10 C 0.336 3.664 11 C -0.245 4.245 12 C 0.139 3.861 13 C -0.451 4.451 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.788 5.788 17 Si 0.914 3.086 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.286 4.286 22 C 0.117 3.883 23 N -0.554 5.554 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.408 0.592 35 H 0.139 0.861 36 H 0.281 0.719 37 H 0.101 0.899 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 11.010 -1.059 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.163 4.163 3 C -0.040 4.040 4 N -0.264 5.264 5 C -0.123 4.123 6 C -0.126 4.126 7 C 0.327 3.673 8 O -0.361 6.361 9 N -0.290 5.290 10 C 0.112 3.888 11 C -0.270 4.270 12 C 0.130 3.870 13 C -0.482 4.482 14 H 0.099 0.901 15 C -0.144 4.144 16 N -0.414 5.414 17 Si 0.738 3.262 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.310 4.310 22 C -0.037 4.037 23 N -0.274 5.274 24 H 0.126 0.874 25 H 0.136 0.864 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.244 0.756 35 H 0.156 0.844 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.570 10.154 -0.792 12.690 hybrid contribution 1.671 1.283 -0.169 2.114 sum -5.898 11.436 -0.962 12.904 Atomic orbital electron populations 1.24548 0.94589 1.02931 0.92763 1.21685 0.95468 0.94154 1.04966 1.21138 0.99478 0.93402 0.89963 1.61905 1.14862 1.38098 1.11521 1.22408 0.96421 0.90915 1.02557 1.22443 0.92024 1.00180 0.97972 1.18300 0.82381 0.88821 0.77760 1.90854 1.67428 1.32079 1.45697 1.43277 1.06189 1.08211 1.71347 1.18235 0.88438 0.85116 0.97052 1.21806 0.90746 1.00937 1.13504 1.17586 0.93315 0.90099 0.85975 1.19610 0.91557 0.99163 1.37893 0.90093 1.25973 1.01327 0.94728 0.92326 1.69749 1.38075 1.06585 1.26987 0.86218 0.81723 0.79517 0.78716 1.19251 1.20215 1.18538 1.21872 0.94612 0.98133 1.16402 1.21744 0.91797 0.93841 0.96354 1.67230 1.39409 0.96667 1.24062 0.87424 0.86381 0.89847 0.93528 0.95841 0.91107 0.90862 0.90988 0.91311 0.95847 0.75623 0.84402 0.90807 0.88111 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 12.52 28.92 0.36 -0.97 16 2 C -0.16 -2.33 4.89 -102.86 -0.50 -2.83 16 3 C 0.09 1.05 4.63 -4.98 -0.02 1.02 16 4 N -0.54 -6.69 5.01 -252.72 -1.27 -7.95 16 5 C 0.02 0.26 9.57 60.07 0.57 0.83 16 6 C 0.02 0.23 9.20 60.07 0.55 0.79 16 7 C 0.54 10.95 7.71 -12.68 -0.10 10.86 16 8 O -0.49 -11.79 14.47 5.27 0.08 -11.71 16 9 N -0.65 -13.55 5.34 -12.58 -0.07 -13.62 16 10 C 0.34 8.51 7.41 -154.78 -1.15 7.36 16 11 C -0.24 -6.38 8.66 -38.47 -0.33 -6.72 16 12 C 0.14 3.72 5.65 -106.55 -0.60 3.12 16 13 C -0.45 -11.73 9.15 -37.65 -0.34 -12.07 16 14 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 15 C 0.07 1.82 5.30 -17.35 -0.09 1.72 16 16 N -0.79 -19.50 10.53 55.55 0.58 -18.92 16 17 Si 0.91 18.02 29.58 -169.99 -5.03 12.99 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.29 -7.21 9.90 -38.70 -0.38 -7.59 16 22 C 0.12 2.91 11.15 -17.68 -0.20 2.71 16 23 N -0.55 -14.70 7.85 -12.54 -0.10 -14.80 16 24 H 0.11 0.96 8.02 -52.49 -0.42 0.54 16 25 H 0.12 1.59 7.49 -52.49 -0.39 1.19 16 26 H 0.08 0.97 6.82 -51.93 -0.35 0.62 16 27 H 0.05 0.46 7.99 -51.93 -0.41 0.05 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.07 0.83 6.41 -51.93 -0.33 0.49 16 32 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.41 7.39 6.88 -40.82 -0.28 7.11 16 35 H 0.14 3.57 5.83 -52.49 -0.31 3.27 16 36 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 37 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 38 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -31.85 322.21 -8.18 -40.03 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.01 Total: 10.90 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.23 Total: -1.77 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.85 Total: -55.29 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.85 -8.18 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635568575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.423 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds