Wall clock time and date at job start Mon Mar 30 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33018 * 1 3 3 C 1.50702 * 120.00039 * 2 1 4 4 N 1.46895 * 109.47138 * 95.00128 * 3 2 1 5 5 C 1.46905 * 110.99813 * 169.99967 * 4 3 2 6 6 C 1.46903 * 111.00028 * 293.95469 * 4 3 2 7 7 C 1.47056 * 120.00024 * 180.02562 * 2 1 3 8 8 O 1.21610 * 120.00043 * 359.97438 * 7 2 1 9 9 N 1.34783 * 119.99993 * 180.27192 * 7 2 1 10 10 C 1.39365 * 120.00040 * 175.05426 * 9 7 2 11 11 C 1.38624 * 119.58186 * 186.37643 * 10 9 7 12 12 C 1.40802 * 118.79309 * 180.02562 * 11 10 9 13 13 C 1.41545 * 120.99845 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00025 * 201.20542 * 13 12 11 15 15 C 1.40031 * 119.99482 * 21.19959 * 13 12 11 16 16 N 1.30732 * 120.00249 * 12.64520 * 15 13 12 17 17 Si 1.86803 * 119.99530 * 192.64208 * 15 13 12 18 18 H 1.48501 * 109.46843 * 90.00432 * 17 15 13 19 19 H 1.48506 * 109.47175 * 210.00001 * 17 15 13 20 20 H 1.48493 * 109.47339 * 330.00426 * 17 15 13 21 21 C 1.41179 * 118.00806 * 0.02562 * 12 11 10 22 22 C 1.37588 * 119.02186 * 359.97438 * 21 12 11 23 23 N 1.32082 * 121.11067 * 359.72876 * 22 21 12 24 24 H 1.08000 * 120.00285 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00121 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47026 * 214.99961 * 3 2 1 27 27 H 1.08999 * 109.47019 * 334.99728 * 3 2 1 28 28 H 1.09002 * 109.46869 * 60.00343 * 5 4 3 29 29 H 1.09000 * 109.46926 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47002 * 299.99932 * 5 4 3 31 31 H 1.08997 * 109.46798 * 60.00035 * 6 4 3 32 32 H 1.08998 * 109.46831 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.46854 * 299.99610 * 6 4 3 34 34 H 0.96996 * 119.99922 * 355.06345 * 9 7 2 35 35 H 1.07994 * 120.60538 * 0.02678 * 11 10 9 36 36 H 0.97002 * 120.00009 * 179.97438 * 16 15 13 37 37 H 1.08006 * 120.49055 * 179.97438 * 21 12 11 38 38 H 1.07998 * 119.44318 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0837 1.3051 0.0000 4 7 2.4331 1.6688 1.3797 5 6 3.3665 2.8029 1.4048 6 6 1.2286 1.9607 2.1683 7 6 2.0655 -1.2735 -0.0006 8 8 1.4574 -2.3267 -0.0006 9 7 3.4133 -1.2735 0.0050 10 6 4.1097 -2.4763 0.1085 11 6 5.4889 -2.4587 0.2471 12 6 6.1758 -3.6835 0.3497 13 6 7.5836 -3.7201 0.4920 14 1 8.1297 -4.6147 0.2313 15 6 8.2682 -2.5963 0.9709 16 7 7.6053 -1.6102 1.5161 17 14 10.1288 -2.5063 0.8304 18 1 10.4976 -1.8724 -0.4608 19 1 10.6713 -1.6975 1.9516 20 1 10.6965 -3.8771 0.8889 21 6 5.4184 -4.8742 0.3052 22 6 4.0522 -4.7913 0.1652 23 7 3.4447 -3.6217 0.0781 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.9944 1.1988 -0.5894 27 1 1.4588 2.0854 -0.4344 28 1 2.9045 3.6644 0.9226 29 1 3.6089 3.0511 2.4381 30 1 4.2789 2.5344 0.8724 31 1 0.5869 1.0799 2.1908 32 1 1.5159 2.2266 3.1855 33 1 0.6893 2.7917 1.7137 34 1 3.8985 -0.4364 -0.0630 35 1 6.0267 -1.5227 0.2758 36 1 8.0796 -0.8319 1.8481 37 1 5.9043 -5.8358 0.3800 38 1 3.4662 -5.6979 0.1300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635568575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:58 Heat of formation + Delta-G solvation = 11.020699 kcal Electronic energy + Delta-G solvation = -20974.341586 eV Core-core repulsion = 17816.805368 eV Total energy + Delta-G solvation = -3157.536219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32580 -39.73393 -38.38873 -36.16074 -35.46226 -34.20211 -32.41231 -30.43807 -28.49629 -27.93046 -27.82475 -25.06356 -23.79448 -22.91718 -22.30683 -20.23150 -19.45471 -18.19067 -17.49590 -17.06131 -16.56886 -16.15195 -16.02734 -15.85750 -15.74943 -15.33613 -15.27774 -14.68102 -14.35263 -14.14089 -14.00219 -13.34482 -13.14649 -13.11957 -12.86658 -12.71287 -12.63867 -12.56858 -12.18465 -12.03904 -11.87936 -11.49820 -11.17133 -11.01512 -10.52725 -9.93789 -9.60689 -9.21964 -8.81985 -8.57231 -6.57115 0.31444 0.96228 1.02214 1.41907 1.55330 1.59810 2.19710 2.21152 2.38056 2.85032 3.21205 3.62213 3.78371 3.79418 4.17413 4.29619 4.32723 4.51621 4.60054 4.69236 4.72687 4.75829 4.81512 4.88228 4.94018 5.05836 5.08161 5.11477 5.24559 5.27256 5.44261 5.51388 5.67763 5.94499 6.06424 6.13150 6.17674 6.49991 6.63760 6.81361 6.84897 7.33688 7.86344 8.28122 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.005471 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.429645 B = 5117.053437 C = 6519.625433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.181 4.181 3 C 0.096 3.904 4 N -0.570 5.570 5 C 0.027 3.973 6 C 0.023 3.977 7 C 0.535 3.465 8 O -0.537 6.537 9 N -0.641 5.641 10 C 0.330 3.670 11 C -0.264 4.264 12 C 0.109 3.891 13 C -0.479 4.479 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.810 5.810 17 Si 0.992 3.008 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.301 4.301 22 C 0.111 3.889 23 N -0.581 5.581 24 H 0.154 0.846 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.419 0.581 35 H 0.135 0.865 36 H 0.292 0.708 37 H 0.116 0.884 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 13.018 -1.114 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.185 4.185 3 C -0.032 4.032 4 N -0.294 5.294 5 C -0.121 4.121 6 C -0.125 4.125 7 C 0.324 3.676 8 O -0.413 6.413 9 N -0.287 5.287 10 C 0.105 3.895 11 C -0.289 4.289 12 C 0.101 3.899 13 C -0.510 4.510 14 H 0.102 0.898 15 C -0.181 4.181 16 N -0.435 5.435 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.324 4.324 22 C -0.043 4.043 23 N -0.301 5.301 24 H 0.172 0.828 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.257 0.743 35 H 0.152 0.848 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.451 12.198 -0.846 14.318 hybrid contribution 1.539 0.668 -0.113 1.681 sum -5.912 12.866 -0.960 14.192 Atomic orbital electron populations 1.24877 0.93660 1.04402 0.88234 1.21496 0.95945 0.92573 1.08451 1.21079 0.99544 0.92527 0.90010 1.61859 1.16035 1.39499 1.12029 1.22393 0.95943 0.90976 1.02772 1.22433 0.91516 1.00432 0.98107 1.19263 0.81865 0.90500 0.75926 1.90814 1.68045 1.34446 1.47995 1.43328 1.06855 1.07361 1.71116 1.18522 0.88723 0.86233 0.96059 1.21794 0.91222 1.00705 1.15184 1.18034 0.94343 0.90982 0.86523 1.19915 0.91650 1.00426 1.38979 0.89791 1.26875 1.06360 0.93692 0.91153 1.69786 1.40369 1.07055 1.26336 0.85057 0.74994 0.79646 0.79135 1.18423 1.19063 1.18279 1.22062 0.94900 0.98467 1.17014 1.22210 0.92140 0.94522 0.95419 1.67354 1.40014 0.97415 1.25333 0.82788 0.87882 0.90292 0.90418 0.93865 0.91050 0.91591 0.92123 0.91247 0.93530 0.74312 0.84793 0.89683 0.86597 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 12.52 66.66 0.83 -0.76 16 2 C -0.18 -5.05 4.89 -18.71 -0.09 -5.15 16 3 C 0.10 2.07 4.63 85.56 0.40 2.46 16 4 N -0.57 -13.05 5.01 -953.46 -4.78 -17.83 16 5 C 0.03 0.50 9.57 127.69 1.22 1.72 16 6 C 0.02 0.43 9.20 127.69 1.18 1.61 16 7 C 0.53 21.95 7.71 86.55 0.67 22.62 16 8 O -0.54 -26.64 14.47 -4.06 -0.06 -26.70 16 9 N -0.64 -27.61 5.34 -311.97 -1.66 -29.28 16 10 C 0.33 17.27 7.41 132.79 0.98 18.26 16 11 C -0.26 -14.22 8.66 22.99 0.20 -14.02 16 12 C 0.11 6.04 5.65 -21.11 -0.12 5.92 16 13 C -0.48 -25.29 9.15 23.52 0.22 -25.07 16 14 H 0.08 4.23 7.88 -2.91 -0.02 4.20 16 15 C 0.04 1.74 5.30 85.29 0.45 2.19 16 16 N -0.81 -40.18 10.53 21.84 0.23 -39.95 16 17 Si 0.99 36.16 29.58 68.60 2.03 38.19 16 18 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 C -0.30 -15.51 9.90 22.84 0.23 -15.28 16 22 C 0.11 5.63 11.15 84.50 0.94 6.57 16 23 N -0.58 -31.72 7.85 -193.59 -1.52 -33.24 16 24 H 0.15 1.97 8.02 -2.91 -0.02 1.95 16 25 H 0.10 2.63 7.49 -2.91 -0.02 2.61 16 26 H 0.08 1.74 6.82 -2.39 -0.02 1.73 16 27 H 0.08 1.21 7.99 -2.39 -0.02 1.19 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 30 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 31 H 0.06 1.26 6.41 -2.39 -0.02 1.24 16 32 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.42 15.55 6.88 -92.71 -0.64 14.92 16 35 H 0.13 7.18 5.83 -2.91 -0.02 7.16 16 36 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 37 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 38 H 0.15 6.48 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -70.97 322.21 1.78 -69.20 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.43 Total: 38.53 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 7.10 Total: 1.07 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -7.73 Total: -120.29 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.06 Total: -26.70 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -70.97 1.78 -69.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635568575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.217 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds