Wall clock time and date at job start Mon Mar 30 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47225 * 2 1 4 4 C 1.50708 * 109.46930 * 240.00232 * 2 1 3 5 5 H 1.07992 * 120.00087 * 244.57221 * 4 2 1 6 6 C 1.37883 * 119.99851 * 64.57992 * 4 2 1 7 7 N 1.31523 * 119.99872 * 7.22155 * 6 4 2 8 8 Si 1.86798 * 119.99971 * 187.22013 * 6 4 2 9 9 H 1.48496 * 109.46939 * 94.98772 * 8 6 4 10 10 H 1.48498 * 109.46806 * 214.98667 * 8 6 4 11 11 H 1.48500 * 109.47239 * 334.98360 * 8 6 4 12 12 C 1.50697 * 109.47621 * 120.00652 * 2 1 3 13 13 O 1.21280 * 120.00514 * 111.35979 * 12 2 1 14 14 N 1.34780 * 119.99670 * 291.36276 * 12 2 1 15 15 C 1.47025 * 125.64908 * 355.65115 * 14 12 2 16 16 C 1.54317 * 107.26902 * 181.09571 * 15 14 12 17 17 C 1.55153 * 102.94706 * 22.19373 * 16 15 14 18 18 H 1.08999 * 111.03846 * 82.58491 * 17 16 15 19 19 C 1.50699 * 111.00673 * 206.42354 * 17 16 15 20 20 N 1.31796 * 119.12092 * 232.19807 * 19 17 16 21 21 C 1.32337 * 120.81366 * 179.97438 * 20 19 17 22 22 C 1.38592 * 119.10745 * 359.97438 * 21 20 19 23 23 C 1.38596 * 118.39889 * 0.02562 * 22 21 20 24 24 N 1.31795 * 119.12415 * 52.17311 * 19 17 16 25 25 C 1.47420 * 125.64606 * 175.69435 * 14 12 2 26 26 H 1.09005 * 109.46756 * 172.27089 * 1 2 3 27 27 H 1.09004 * 109.46623 * 292.26830 * 1 2 3 28 28 H 1.08999 * 109.47314 * 52.27118 * 1 2 3 29 29 H 0.96993 * 119.99784 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.87858 * 300.51224 * 15 14 12 31 31 H 1.09000 * 109.87921 * 61.52196 * 15 14 12 32 32 H 1.09001 * 110.72111 * 263.82894 * 16 15 14 33 33 H 1.09000 * 110.71724 * 140.56047 * 16 15 14 34 34 H 1.08004 * 120.44482 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.80195 * 179.72540 * 22 21 20 36 36 H 1.08007 * 120.44676 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.37319 * 36.99936 * 25 14 12 38 38 H 1.09004 * 110.46060 * 274.71744 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5909 -1.6295 -1.1333 6 6 1.7788 -0.1867 -2.4806 7 7 1.2250 1.0006 -2.5963 8 14 2.2220 -1.1636 -4.0099 9 1 1.0325 -1.9211 -4.4753 10 1 2.6665 -0.2342 -5.0794 11 1 3.3192 -2.1120 -3.6908 12 6 2.0324 -0.7105 1.2303 13 8 2.5953 -1.7797 1.1259 14 7 1.8562 -0.1577 2.4469 15 6 1.2752 1.1669 2.7102 16 6 1.3004 1.3827 4.2380 17 6 2.4111 0.4070 4.7086 18 1 3.3991 0.8517 4.5888 19 6 2.1844 -0.0219 6.1354 20 7 3.1659 0.1023 7.0061 21 6 3.0034 -0.2633 8.2675 22 6 1.7816 -0.7814 8.6672 23 6 0.7738 -0.8966 7.7228 24 7 1.0098 -0.5107 6.4793 25 6 2.2150 -0.7809 3.7338 26 1 -0.3633 -1.0184 -0.1382 27 1 -0.3633 0.3895 0.9511 28 1 -0.3634 0.6288 -0.8128 29 1 1.0470 1.3691 -3.4756 30 1 1.8689 1.9367 2.2172 31 1 0.2486 1.2005 2.3455 32 1 0.3405 1.1169 4.6809 33 1 1.5648 2.4127 4.4776 34 1 3.8119 -0.1593 8.9760 35 1 1.6204 -1.0925 9.6888 36 1 -0.1911 -1.2963 7.9981 37 1 3.1407 -1.3479 3.6358 38 1 1.4096 -1.4279 4.0815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635803716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:57 Heat of formation + Delta-G solvation = 15.104956 kcal Electronic energy + Delta-G solvation = -20869.232005 eV Core-core repulsion = 17711.872893 eV Total energy + Delta-G solvation = -3157.359112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34893 -39.29545 -36.89375 -33.94638 -33.69607 -33.09682 -30.90880 -30.04218 -28.63902 -25.09202 -24.99820 -24.69548 -23.14851 -21.57542 -20.72834 -18.60890 -17.84453 -17.18823 -16.25053 -16.03561 -15.77036 -15.14005 -15.00535 -14.68207 -14.02539 -13.79228 -13.70208 -13.36242 -13.18772 -12.75546 -12.34908 -12.00882 -11.60933 -11.47609 -11.30624 -11.07699 -10.97868 -10.92759 -10.87937 -10.66744 -10.42839 -10.22625 -9.91309 -9.70531 -9.45059 -8.93766 -8.50107 -8.32218 -7.98207 -6.01061 -3.99984 0.60746 0.83800 3.37090 3.40944 3.43423 3.48110 3.51998 3.74687 3.87535 3.93776 4.31495 4.51434 4.65257 4.70924 4.79580 4.80902 4.97545 5.32314 5.34538 5.40265 5.45405 5.58497 5.81149 5.84433 6.02112 6.10697 6.16032 6.21745 6.29980 6.70500 6.75185 6.86510 6.90694 7.00908 7.51808 7.71603 7.87296 8.02781 8.14875 8.46531 9.08650 9.26740 9.64078 11.09556 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045150 B = 0.003612 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.000763 B = 7750.718165 C = 7941.735260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.034 3.966 3 H 0.056 0.944 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.537 3.463 13 O -0.544 6.544 14 N -0.630 5.630 15 C 0.105 3.895 16 C -0.117 4.117 17 C -0.041 4.041 18 H 0.110 0.890 19 C 0.338 3.662 20 N -0.516 5.516 21 C 0.149 3.851 22 C -0.238 4.238 23 C 0.151 3.849 24 N -0.509 5.509 25 C 0.122 3.878 26 H 0.035 0.965 27 H 0.020 0.980 28 H 0.075 0.925 29 H 0.260 0.740 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.147 0.853 36 H 0.169 0.831 37 H 0.074 0.926 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 1.882 22.699 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.013 3.987 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.329 3.671 13 O -0.420 6.420 14 N -0.368 5.368 15 C -0.018 4.018 16 C -0.156 4.156 17 C -0.062 4.062 18 H 0.128 0.872 19 C 0.071 3.929 20 N -0.229 5.229 21 C -0.018 4.018 22 C -0.260 4.260 23 C -0.016 4.016 24 N -0.223 5.223 25 C -0.002 4.002 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.185 0.815 35 H 0.164 0.836 36 H 0.186 0.814 37 H 0.092 0.908 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.199 1.657 21.448 21.545 hybrid contribution 0.018 -0.702 0.343 0.781 sum -1.181 0.956 21.791 21.843 Atomic orbital electron populations 1.21726 0.96678 1.00790 0.99337 1.18835 0.93831 0.97127 0.88879 0.92654 1.21151 1.34607 1.09258 0.89127 0.90830 1.24938 0.95288 0.94777 0.99040 1.69950 1.44210 1.15626 1.23681 0.86483 0.78790 0.79939 0.82309 1.20711 1.21347 1.19690 1.21821 0.76861 0.85412 0.82959 1.90536 1.42510 1.23193 1.85736 1.48756 1.64282 1.18455 1.05257 1.22033 0.99771 0.85667 0.94351 1.22722 0.98705 0.98842 0.95292 1.21203 1.01550 0.97666 0.85801 0.87197 1.22851 0.84350 0.89759 0.95942 1.68290 1.33671 1.17821 1.03151 1.23258 0.96265 0.89812 0.92415 1.22908 0.96249 1.04126 1.02724 1.23284 0.99242 0.91146 0.87888 1.68216 1.23066 1.11554 1.19443 1.21972 1.01119 0.93886 0.83222 0.94537 0.96071 0.90577 0.93027 0.91178 0.90496 0.89539 0.90100 0.81511 0.83562 0.81432 0.90774 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.86 37.16 0.33 -2.65 16 2 C 0.03 0.88 1.90 -92.92 -0.18 0.70 16 3 H 0.06 1.46 7.97 -51.93 -0.41 1.05 16 4 C -0.50 -14.63 8.30 -34.43 -0.29 -14.92 16 5 H 0.07 2.27 6.79 -52.49 -0.36 1.91 16 6 C 0.06 1.71 5.26 -17.81 -0.09 1.62 16 7 N -0.90 -25.58 12.06 55.43 0.67 -24.91 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.54 12.99 7.09 -10.99 -0.08 12.91 16 13 O -0.54 -14.98 15.73 5.56 0.09 -14.89 16 14 N -0.63 -12.04 3.32 -170.52 -0.57 -12.61 16 15 C 0.11 1.60 6.13 -3.07 -0.02 1.58 16 16 C -0.12 -1.42 6.39 -24.90 -0.16 -1.58 16 17 C -0.04 -0.55 3.43 -89.62 -0.31 -0.86 16 18 H 0.11 1.44 8.13 -51.93 -0.42 1.02 16 19 C 0.34 4.30 6.56 -157.19 -1.03 3.27 16 20 N -0.52 -6.15 10.33 -10.72 -0.11 -6.26 16 21 C 0.15 1.25 11.30 -17.20 -0.19 1.05 16 22 C -0.24 -1.63 10.17 -39.32 -0.40 -2.03 16 23 C 0.15 1.29 11.30 -17.21 -0.19 1.09 16 24 N -0.51 -6.10 9.23 -10.73 -0.10 -6.20 16 25 C 0.12 2.03 6.37 -2.53 -0.02 2.01 16 26 H 0.04 0.87 8.13 -51.93 -0.42 0.44 16 27 H 0.02 0.41 5.50 -51.93 -0.29 0.13 16 28 H 0.08 1.90 6.94 -51.93 -0.36 1.54 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 31 H 0.08 1.17 5.88 -51.93 -0.31 0.86 16 32 H 0.09 1.05 7.49 -51.93 -0.39 0.66 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.07 1.32 8.00 -51.93 -0.42 0.90 16 38 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -34.23 315.89 -7.93 -42.16 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.02 Total: -1.40 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.63 Total: 2.20 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.11 Total: -49.98 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.09 Total: -14.89 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.23 -7.93 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635803716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.262 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds