Wall clock time and date at job start Mon Mar 30 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47240 * 2 1 4 4 C 1.50706 * 109.47209 * 240.00091 * 2 1 3 5 5 H 1.07995 * 119.99895 * 240.00280 * 4 2 1 6 6 C 1.37882 * 119.99688 * 59.99638 * 4 2 1 7 7 N 1.31513 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99693 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47404 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46942 * 120.00255 * 8 6 4 11 11 H 1.48505 * 109.47418 * 240.00300 * 8 6 4 12 12 C 1.50698 * 109.47314 * 120.00124 * 2 1 3 13 13 O 1.21288 * 120.00041 * 88.51647 * 12 2 1 14 14 N 1.34775 * 120.00382 * 268.52121 * 12 2 1 15 15 C 1.47025 * 125.64348 * 5.43945 * 14 12 2 16 16 C 1.54329 * 107.26992 * 181.10142 * 15 14 12 17 17 C 1.55157 * 102.94382 * 22.18943 * 16 15 14 18 18 H 1.09000 * 111.00422 * 82.60813 * 17 16 15 19 19 C 1.50697 * 111.00596 * 206.42969 * 17 16 15 20 20 C 1.38383 * 120.00234 * 34.16555 * 19 17 16 21 21 N 1.32133 * 120.00150 * 180.02562 * 20 19 17 22 22 C 1.32154 * 119.99121 * 0.02562 * 21 20 19 23 23 C 1.38341 * 120.00817 * 0.25633 * 22 21 20 24 24 N 1.32122 * 119.99756 * 214.19341 * 19 17 16 25 25 C 1.47465 * 125.63317 * 185.52266 * 14 12 2 26 26 H 1.08999 * 109.47315 * 292.49234 * 1 2 3 27 27 H 1.09000 * 109.47028 * 52.48643 * 1 2 3 28 28 H 1.09000 * 109.47156 * 172.48922 * 1 2 3 29 29 H 0.96999 * 119.99827 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.88624 * 61.68303 * 15 14 12 31 31 H 1.09002 * 110.01180 * 300.58741 * 15 14 12 32 32 H 1.09007 * 110.71704 * 263.82762 * 16 15 14 33 33 H 1.08999 * 110.87415 * 140.62516 * 16 15 14 34 34 H 1.08004 * 120.00335 * 0.02562 * 20 19 17 35 35 H 1.08005 * 119.99655 * 179.97438 * 22 21 20 36 36 H 1.07995 * 120.00007 * 179.71710 * 23 22 21 37 37 H 1.09000 * 110.40363 * 37.01112 * 25 14 12 38 38 H 1.09002 * 110.35065 * 274.67288 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0323 -0.7104 1.2304 13 8 2.2089 -1.9102 1.2084 14 7 2.2854 -0.0127 2.3554 15 6 2.0106 1.4176 2.5566 16 6 2.4888 1.7804 3.9783 17 6 3.5221 0.6664 4.2924 18 1 4.4949 0.9031 3.8614 19 6 3.6339 0.4365 5.7775 20 6 2.5183 0.5731 6.5848 21 7 2.6165 0.3719 7.8871 22 6 3.7803 0.0408 8.4184 23 6 4.8968 -0.0901 7.6122 24 7 4.7973 0.1049 6.3089 25 6 2.8853 -0.5573 3.5875 26 1 -0.3634 0.3931 0.9495 27 1 -0.3633 0.6258 -0.8152 28 1 -0.3633 -1.0188 -0.1343 29 1 0.7094 1.1618 -3.4844 30 1 0.9409 1.6059 2.4659 31 1 2.5548 2.0091 1.8203 32 1 1.6590 1.7470 4.6845 33 1 2.9638 2.7614 3.9898 34 1 1.5673 0.8441 6.1505 35 1 3.8607 -0.1232 9.4829 36 1 5.8488 -0.3562 8.0472 37 1 3.6499 -1.2950 3.3439 38 1 2.1162 -1.0013 4.2194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645326776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:44 Heat of formation + Delta-G solvation = -10.779690 kcal Electronic energy + Delta-G solvation = -20851.641929 eV Core-core repulsion = 17693.160375 eV Total energy + Delta-G solvation = -3158.481554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.22544 -40.88383 -38.56389 -35.79721 -35.35226 -34.06148 -32.48142 -31.12100 -29.79395 -27.28587 -26.20292 -25.65053 -24.36025 -23.26134 -21.76579 -20.17489 -18.69888 -18.35010 -18.12405 -17.86702 -17.11783 -16.78015 -16.25851 -15.84653 -15.61026 -15.27859 -14.80185 -14.60510 -14.41598 -13.97458 -13.86252 -13.48466 -13.25457 -12.95331 -12.72815 -12.63946 -12.59797 -12.55608 -12.50034 -12.23927 -12.11689 -12.05760 -11.74845 -11.07457 -10.64194 -10.39727 -10.15953 -10.03121 -9.59167 -8.17887 -6.28132 -0.22305 0.13836 1.38545 1.40646 1.53339 1.84414 2.08933 2.44443 2.66878 3.00014 3.11926 3.32753 3.42355 3.56205 3.60827 3.90891 4.02357 4.22162 4.24201 4.27903 4.37665 4.48098 4.57970 4.66506 4.70184 4.84063 4.86387 4.92911 4.99482 5.06241 5.19139 5.36761 5.42850 5.51872 5.70921 5.89093 6.15689 6.31066 6.60985 6.77325 6.80941 7.34675 7.44083 8.88701 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040856 B = 0.003656 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.163842 B = 7656.739752 C = 7895.957946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.035 3.965 3 H 0.045 0.955 4 C -0.532 4.532 5 H 0.039 0.961 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.270 1.270 12 C 0.535 3.465 13 O -0.593 6.593 14 N -0.627 5.627 15 C 0.096 3.904 16 C -0.110 4.110 17 C -0.039 4.039 18 H 0.100 0.900 19 C 0.086 3.914 20 C 0.050 3.950 21 N -0.457 5.457 22 C 0.046 3.954 23 C 0.053 3.947 24 N -0.464 5.464 25 C 0.118 3.882 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.017 0.983 29 H 0.267 0.733 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.187 0.813 35 H 0.205 0.795 36 H 0.202 0.798 37 H 0.052 0.948 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 5.866 21.378 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.014 3.986 3 H 0.063 0.937 4 C -0.570 4.570 5 H 0.058 0.942 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.195 1.195 12 C 0.327 3.673 13 O -0.474 6.474 14 N -0.362 5.362 15 C -0.026 4.026 16 C -0.148 4.148 17 C -0.060 4.060 18 H 0.118 0.882 19 C -0.054 4.054 20 C -0.109 4.109 21 N -0.172 5.172 22 C -0.113 4.113 23 C -0.107 4.107 24 N -0.180 5.180 25 C -0.005 4.005 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.203 0.797 35 H 0.222 0.778 36 H 0.219 0.781 37 H 0.071 0.929 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.187 5.318 21.155 22.211 hybrid contribution 0.393 -0.778 -1.104 1.407 sum 4.580 4.539 20.050 21.062 Atomic orbital electron populations 1.21476 0.95206 0.99850 1.00521 1.18774 0.95030 0.96060 0.88779 0.93715 1.21202 1.32158 1.12350 0.91294 0.94230 1.25558 0.95061 0.95696 1.01269 1.69951 1.36873 1.23323 1.24421 0.85549 0.78403 0.78597 0.79371 1.20640 1.19941 1.19498 1.21487 0.75121 0.86768 0.83913 1.90513 1.54949 1.17255 1.84634 1.48673 1.62838 1.11846 1.12834 1.22257 1.02072 0.79959 0.98305 1.22874 0.98436 0.98866 0.94577 1.21049 1.01123 0.95429 0.88377 0.88211 1.21774 0.90383 0.96578 0.96661 1.23877 1.00385 0.96761 0.89831 1.68555 1.27277 1.08648 1.12710 1.24408 0.88395 0.94829 1.03706 1.24382 1.02098 0.95395 0.88865 1.68247 1.26328 1.08798 1.14586 1.22116 0.96747 0.96027 0.85625 0.93696 0.90744 0.96361 0.92411 0.90004 0.91131 0.87779 0.86820 0.79660 0.77821 0.78098 0.92941 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.39 8.85 71.98 0.64 -4.75 16 2 C 0.03 1.78 2.21 -12.29 -0.03 1.76 16 3 H 0.04 2.28 7.03 -2.38 -0.02 2.26 16 4 C -0.53 -31.29 8.31 25.60 0.21 -31.08 16 5 H 0.04 2.50 7.17 -2.91 -0.02 2.48 16 6 C 0.02 1.35 5.30 84.66 0.45 1.80 16 7 N -0.91 -50.63 11.41 21.45 0.24 -50.38 16 8 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 C 0.54 25.90 6.87 87.66 0.60 26.50 16 13 O -0.59 -33.46 16.30 -3.06 -0.05 -33.51 16 14 N -0.63 -22.76 3.33 -811.66 -2.70 -25.46 16 15 C 0.10 2.53 6.25 86.73 0.54 3.07 16 16 C -0.11 -1.90 6.25 31.78 0.20 -1.71 16 17 C -0.04 -0.88 3.43 -10.15 -0.03 -0.91 16 18 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 19 C 0.09 1.80 5.88 42.55 0.25 2.05 16 20 C 0.05 0.93 10.26 84.68 0.87 1.80 16 21 N -0.46 -8.56 10.50 -195.22 -2.05 -10.61 16 22 C 0.05 0.62 11.22 84.67 0.95 1.57 16 23 C 0.05 0.77 11.22 84.67 0.95 1.72 16 24 N -0.46 -10.02 10.42 -183.30 -1.91 -11.93 16 25 C 0.12 3.61 6.35 86.85 0.55 4.16 16 26 H 0.04 1.78 7.90 -2.39 -0.02 1.76 16 27 H 0.07 3.78 6.31 -2.39 -0.02 3.77 16 28 H 0.02 0.89 8.13 -2.39 -0.02 0.87 16 29 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.08 2.02 7.91 -2.39 -0.02 2.00 16 31 H 0.07 1.93 7.63 -2.39 -0.02 1.92 16 32 H 0.10 1.34 5.76 -2.38 -0.01 1.33 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.19 2.68 6.15 -2.91 -0.02 2.66 16 35 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.05 1.86 8.09 -2.39 -0.02 1.84 16 38 H 0.07 1.96 7.98 -2.39 -0.02 1.95 16 Total: -1.00 -75.32 316.00 2.78 -72.54 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.07 Total: 6.32 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.15 Total: 5.97 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -6.42 Total: -98.39 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.05 Total: -33.51 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -75.32 2.78 -72.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645326776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.765 kcal (2) G-P(sol) polarization free energy of solvation -75.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds