Wall clock time and date at job start Mon Mar 30 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00289 * 2 1 4 4 H 1.48501 * 109.47232 * 240.00092 * 3 2 1 5 5 H 1.48496 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47087 * 120.00261 * 3 2 1 7 7 C 1.37878 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46798 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00053 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99670 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99811 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46939 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46958 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47085 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 0.97003 * 119.99565 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47130 * 60.00402 * 9 7 2 26 26 H 1.09004 * 109.47166 * 300.00266 * 9 7 2 27 27 H 1.08992 * 109.47400 * 60.00222 * 10 9 7 28 28 H 1.09004 * 109.47064 * 300.00049 * 10 9 7 29 29 H 0.97003 * 119.99787 * 359.97438 * 13 11 10 30 30 H 1.09003 * 109.47142 * 60.00306 * 14 13 11 31 31 H 1.08996 * 109.47546 * 300.00303 * 14 13 11 32 32 H 1.08992 * 109.47400 * 60.00350 * 15 14 13 33 33 H 1.08999 * 109.46626 * 300.00011 * 15 14 13 34 34 H 1.08995 * 109.47671 * 59.99728 * 16 15 14 35 35 H 1.09004 * 109.46984 * 299.99744 * 16 15 14 36 36 H 1.09005 * 109.47610 * 59.99944 * 17 16 15 37 37 H 1.09000 * 109.47256 * 299.99285 * 17 16 15 38 38 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0011 13 7 2.1654 -6.1345 -0.0008 14 6 1.4329 -7.4031 -0.0008 15 6 2.4271 -8.5661 0.0004 16 6 1.6620 -9.8911 -0.0003 17 6 2.6562 -11.0540 0.0002 18 6 1.9027 -12.3591 0.0001 19 6 1.5575 -12.9579 -1.1971 20 6 0.8668 -14.1553 -1.1971 21 6 0.5217 -14.7543 0.0000 22 6 0.8622 -14.1528 1.1972 23 6 1.5570 -12.9578 1.1972 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 3.1354 -6.1345 -0.0004 30 1 0.8065 -7.4610 -0.8910 31 1 0.8059 -7.4608 0.8889 32 1 3.0530 -8.5081 0.8907 33 1 3.0544 -8.5086 -0.8892 34 1 1.0363 -9.9489 -0.8909 35 1 1.0345 -9.9487 0.8890 36 1 3.2823 -10.9965 0.8906 37 1 3.2834 -10.9962 -0.8894 38 1 1.8275 -12.4901 -2.1324 39 1 0.5967 -14.6228 -2.1325 40 1 -0.0176 -15.6900 -0.0001 41 1 0.5888 -14.6185 2.1324 42 1 1.8273 -12.4904 2.1326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589685204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:55 Heat of formation + Delta-G solvation = -50.823889 kcal Electronic energy + Delta-G solvation = -19283.063693 eV Core-core repulsion = 16226.386035 eV Total energy + Delta-G solvation = -3056.677658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.65364 -39.09034 -36.28343 -34.12769 -33.41264 -31.65957 -31.20528 -30.78609 -28.04571 -25.71461 -23.92435 -22.89493 -21.81515 -21.38964 -21.02627 -19.46565 -17.11629 -16.79230 -16.16847 -15.69399 -15.55866 -15.39688 -15.34525 -14.59192 -14.40755 -13.76842 -13.75179 -13.56353 -13.33911 -13.00294 -12.37914 -12.27410 -12.27079 -12.05768 -11.64254 -11.38758 -11.27034 -11.15743 -11.07248 -10.89696 -10.82393 -10.59759 -9.92261 -9.63566 -9.24305 -9.16134 -9.03975 -8.93407 -8.72743 -8.29534 -5.93762 -3.98218 1.03307 1.07868 3.31180 3.35857 3.40145 3.41743 3.43955 3.62193 4.40932 4.48111 4.49616 4.65778 4.72017 4.73595 4.80042 5.04583 5.07251 5.19973 5.30061 5.30596 5.40885 5.46316 5.51653 5.61197 5.64492 5.74703 5.74993 5.92680 6.02196 6.11608 6.14887 6.19717 6.26587 6.28160 6.32926 6.69051 6.78583 6.93121 7.76548 7.89412 7.94496 8.10031 8.41396 8.83615 9.10454 9.65045 11.17175 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.062188 B = 0.001976 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.139627 B =14163.492361 C =14282.633487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.536 6.536 13 N -0.746 5.746 14 C 0.118 3.882 15 C -0.130 4.130 16 C -0.110 4.110 17 C -0.081 4.081 18 C -0.080 4.080 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.118 4.118 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.397 0.603 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -29.527 0.000 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.296 3.704 12 O -0.411 6.411 13 N -0.400 5.400 14 C -0.006 4.006 15 C -0.168 4.168 16 C -0.149 4.149 17 C -0.119 4.119 18 C -0.080 4.080 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.230 0.770 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.556 -29.390 0.000 29.911 hybrid contribution 0.874 0.799 0.001 1.184 sum 6.430 -28.591 0.001 29.305 Atomic orbital electron populations 1.69992 1.06055 1.26666 1.50130 1.25033 0.94838 0.99226 0.95334 0.86642 0.79526 0.83167 0.78516 1.20265 1.21294 1.20272 1.21196 0.92894 0.91054 1.51462 0.92655 1.18896 0.93200 0.89388 0.98608 1.21864 1.00699 0.92039 1.02423 1.21564 0.88656 0.85725 0.74435 1.90665 1.14536 1.87698 1.48243 1.46218 1.10010 1.05726 1.78061 1.21243 0.94636 0.82621 1.02098 1.21803 0.98455 0.93769 1.02744 1.21479 0.97879 0.92476 1.03018 1.20639 0.97218 0.90898 1.03103 1.19953 0.98462 0.96359 0.93178 1.21092 0.99056 0.95762 0.97706 1.21163 0.98598 0.95829 0.98106 1.21153 1.00604 1.00153 0.92691 1.21164 0.98582 0.95842 0.98106 1.21090 0.99025 0.95795 0.97706 0.92909 0.95836 0.95848 0.90287 0.90294 0.77002 0.91969 0.91974 0.91257 0.91265 0.91423 0.91420 0.90850 0.90845 0.86064 0.86154 0.86262 0.86152 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 11 C 0.51 10.03 7.83 -10.98 -0.09 9.95 16 12 O -0.54 -13.07 15.98 5.56 0.09 -12.98 16 13 N -0.75 -10.59 5.56 -60.29 -0.33 -10.92 16 14 C 0.12 1.46 5.67 -4.04 -0.02 1.44 16 15 C -0.13 -1.07 5.33 -26.73 -0.14 -1.22 16 16 C -0.11 -0.86 5.20 -26.74 -0.14 -0.99 16 17 C -0.08 -0.55 5.34 -27.88 -0.15 -0.70 16 18 C -0.08 -0.63 5.13 -104.62 -0.54 -1.17 16 19 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 20 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 21 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 22 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 23 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.40 4.32 8.47 -40.82 -0.35 3.98 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.45 8.09 -51.93 -0.42 0.04 16 37 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -34.93 356.52 -9.95 -44.87 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.06 Total: -1.11 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.72 Total: -15.06 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.40 Total: -37.93 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.93 -9.95 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589685204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.951 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds