Wall clock time and date at job start Mon Mar 30 2020 01:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48500 * 109.47428 * 270.00715 * 3 2 1 5 5 H 1.48500 * 109.47183 * 30.00242 * 3 2 1 6 6 H 1.48495 * 109.47341 * 150.00412 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99809 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99657 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99645 * 180.02562 * 10 9 7 12 12 C 1.53122 * 109.52027 * 210.00197 * 11 10 9 13 13 C 1.53040 * 109.27933 * 182.38217 * 12 11 10 14 14 N 1.46846 * 109.52603 * 59.17712 * 13 12 11 15 15 C 1.46893 * 111.00130 * 174.16513 * 14 13 12 16 16 C 1.50696 * 109.47236 * 170.00273 * 15 14 13 17 17 C 1.38230 * 120.00309 * 89.99753 * 16 15 14 18 18 C 1.38235 * 120.00326 * 179.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38240 * 120.00061 * 0.07178 * 19 18 17 21 21 C 1.38234 * 120.00081 * 359.88514 * 20 19 18 22 22 C 1.46852 * 111.19772 * 298.26117 * 14 13 12 23 23 C 1.53035 * 109.52355 * 61.73794 * 22 14 13 24 24 H 0.96999 * 119.99787 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47180 * 60.00524 * 9 7 2 26 26 H 1.08993 * 109.47455 * 300.00336 * 9 7 2 27 27 H 1.08997 * 109.52540 * 330.12633 * 11 10 9 28 28 H 1.08997 * 109.50491 * 62.43615 * 12 11 10 29 29 H 1.09000 * 109.53687 * 302.34063 * 12 11 10 30 30 H 1.09003 * 109.46008 * 299.16111 * 13 12 11 31 31 H 1.08999 * 109.45452 * 179.19405 * 13 12 11 32 32 H 1.09003 * 109.47526 * 49.99792 * 15 14 13 33 33 H 1.09001 * 109.47224 * 289.99946 * 15 14 13 34 34 H 1.08000 * 120.00376 * 359.97438 * 17 16 15 35 35 H 1.08000 * 120.00616 * 179.72578 * 18 17 16 36 36 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.00107 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.00147 * 180.10835 * 21 20 19 39 39 H 1.09000 * 109.46010 * 181.75754 * 22 14 13 40 40 H 1.09005 * 109.45940 * 301.72671 * 22 14 13 41 41 H 1.09006 * 109.50538 * 180.87622 * 23 22 14 42 42 H 1.09007 * 109.50255 * 60.76211 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.5651 -4.8753 -0.0024 12 6 2.4736 -5.8753 0.7181 13 6 1.8383 -7.2665 0.6623 14 7 1.6543 -7.6663 -0.7386 15 6 1.1748 -9.0516 -0.8322 16 6 0.7653 -9.3466 -2.2521 17 6 1.6899 -9.8504 -3.1477 18 6 1.3141 -10.1215 -4.4501 19 6 0.0134 -9.8894 -4.8567 20 6 -0.9110 -9.3846 -3.9613 21 6 -0.5354 -9.1143 -2.6587 22 6 0.7475 -6.7472 -1.4384 23 6 1.3503 -5.3406 -1.4453 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 0.6044 -4.8215 0.5097 28 1 2.5957 -5.5724 1.7580 29 1 3.4477 -5.9004 0.2296 30 1 0.8707 -7.2442 1.1637 31 1 2.4897 -7.9834 1.1621 32 1 0.3180 -9.1850 -0.1717 33 1 1.9721 -9.7329 -0.5351 34 1 2.7060 -10.0322 -2.8300 35 1 2.0375 -10.5110 -5.1510 36 1 -0.2802 -10.1008 -5.8743 37 1 -1.9271 -9.2028 -4.2791 38 1 -1.2581 -8.7217 -1.9587 39 1 0.6067 -7.0871 -2.4644 40 1 -0.2150 -6.7273 -0.9271 41 1 0.6699 -4.6555 -1.9512 42 1 2.3065 -5.3570 -1.9685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002557557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:18 Heat of formation + Delta-G solvation = -27.636106 kcal Electronic energy + Delta-G solvation = -20917.885327 eV Core-core repulsion = 17862.213166 eV Total energy + Delta-G solvation = -3055.672160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94436 -38.50516 -36.38501 -33.34033 -32.47185 -31.12935 -30.70694 -30.21526 -27.25981 -25.78363 -23.19396 -22.89190 -22.53182 -21.93211 -20.94048 -19.49695 -16.91005 -16.55964 -16.04118 -15.52746 -15.51280 -15.32725 -14.57044 -14.34823 -14.24303 -14.02378 -13.59597 -13.53662 -12.99661 -12.82465 -12.59938 -12.28056 -12.13503 -11.82081 -11.61855 -11.13917 -11.12047 -11.02823 -10.93926 -10.87196 -10.58873 -10.31210 -10.22394 -9.77331 -9.08240 -9.04319 -8.95945 -8.74942 -8.25141 -8.10346 -6.09656 -4.11187 1.16653 1.26359 3.31391 3.36225 3.41812 3.54382 4.09194 4.35444 4.56218 4.68589 4.80385 4.85338 4.95601 5.07834 5.13892 5.21868 5.26833 5.34374 5.37645 5.45049 5.54458 5.59111 5.64440 5.78791 5.84492 5.90378 5.90778 5.96953 6.14628 6.26324 6.33393 6.36314 6.38043 6.47032 6.59575 6.70864 6.83970 7.09478 7.13601 7.16554 7.45731 7.81772 8.17987 8.62205 9.03070 9.53748 11.01860 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.003312 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.247823 B = 8452.504347 C = 8953.414740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.388 6.388 11 C 0.090 3.910 12 C -0.112 4.112 13 C 0.061 3.939 14 N -0.532 5.532 15 C 0.092 3.908 16 C -0.080 4.080 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.113 4.113 22 C 0.056 3.944 23 C -0.136 4.136 24 H 0.264 0.736 25 H 0.004 0.996 26 H 0.003 0.997 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.068 0.932 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -22.049 -4.972 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.122 3.878 10 O -0.308 6.308 11 C 0.031 3.969 12 C -0.150 4.150 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.035 4.035 16 C -0.081 4.081 17 C -0.118 4.118 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.071 4.071 23 C -0.174 4.174 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.109 -21.856 -5.173 22.460 hybrid contribution -0.862 0.899 0.303 1.282 sum -0.972 -20.957 -4.870 21.537 Atomic orbital electron populations 1.69965 1.06109 1.27112 1.50660 1.24952 0.94973 0.99429 0.95164 0.86341 0.79682 0.82263 0.78244 1.20452 1.21103 1.19605 1.21078 0.94088 0.89416 1.50679 0.91541 1.20218 0.88753 0.83680 0.95190 1.87895 1.35422 1.12741 1.94720 1.21855 0.95294 0.85757 0.94019 1.21620 1.00176 0.92209 1.00968 1.22076 0.99452 0.97186 0.87978 1.62100 1.48285 1.00942 1.14319 1.21080 0.99050 0.90973 0.92361 1.19782 0.93636 0.98798 0.95848 1.21038 0.99171 0.98396 0.93183 1.21159 0.96293 1.00443 0.96128 1.21153 0.93733 0.99672 0.99492 1.21124 0.99652 0.99575 0.93616 1.21114 0.95843 0.99807 0.96421 1.22200 0.93144 0.92701 0.99070 1.22087 1.02126 0.94374 0.98842 0.92691 0.97782 0.97888 0.93698 0.91058 0.90488 0.94916 0.90574 0.94095 0.89890 0.85853 0.86130 0.86262 0.86125 0.86328 0.90196 0.95251 0.91307 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -15.39 9.43 -34.44 -0.32 -15.72 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.20 5.47 5.50 36.01 0.20 5.67 16 10 O -0.39 -9.62 9.98 -35.23 -0.35 -9.97 16 11 C 0.09 1.74 2.68 -26.61 -0.07 1.67 16 12 C -0.11 -1.77 5.75 -26.65 -0.15 -1.92 16 13 C 0.06 0.78 5.42 -3.83 -0.02 0.76 16 14 N -0.53 -6.91 4.80 -236.11 -1.13 -8.04 16 15 C 0.09 0.98 5.43 -4.98 -0.03 0.95 16 16 C -0.08 -0.86 4.12 -104.63 -0.43 -1.29 16 17 C -0.10 -1.01 9.70 -39.59 -0.38 -1.39 16 18 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 19 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 20 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 21 C -0.11 -1.18 7.80 -39.58 -0.31 -1.49 16 22 C 0.06 0.81 4.58 -3.83 -0.02 0.79 16 23 C -0.14 -2.39 5.72 -26.65 -0.15 -2.54 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.00 0.13 7.96 -51.92 -0.41 -0.29 16 26 H 0.00 0.10 8.09 -51.93 -0.42 -0.32 16 27 H 0.04 0.88 7.79 -51.93 -0.40 0.48 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 33 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.08 1.12 5.64 -51.93 -0.29 0.83 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 42 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -31.74 339.45 -10.61 -42.35 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.98 Total: -2.46 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -2.98 Total: -17.61 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: -0.40 Total: -34.47 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.35 Total: -9.97 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.74 -10.61 -42.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002557557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.712 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds