Wall clock time and date at job start Mon Mar 30 2020 01:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48500 * 109.47428 * 270.00715 * 3 2 1 5 5 H 1.48500 * 109.47183 * 30.00242 * 3 2 1 6 6 H 1.48495 * 109.47341 * 150.00412 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99809 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99657 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99645 * 180.02562 * 10 9 7 12 12 C 1.53122 * 109.52027 * 210.00197 * 11 10 9 13 13 C 1.53040 * 109.27933 * 182.38217 * 12 11 10 14 14 N 1.46846 * 109.52603 * 59.17712 * 13 12 11 15 15 C 1.46893 * 111.00130 * 174.16513 * 14 13 12 16 16 C 1.50696 * 109.47236 * 170.00273 * 15 14 13 17 17 C 1.38230 * 120.00309 * 89.99753 * 16 15 14 18 18 C 1.38235 * 120.00326 * 179.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38240 * 120.00061 * 0.07178 * 19 18 17 21 21 C 1.38234 * 120.00081 * 359.88514 * 20 19 18 22 22 C 1.46852 * 111.19772 * 298.26117 * 14 13 12 23 23 C 1.53035 * 109.52355 * 61.73794 * 22 14 13 24 24 H 0.96999 * 119.99787 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47180 * 60.00524 * 9 7 2 26 26 H 1.08993 * 109.47455 * 300.00336 * 9 7 2 27 27 H 1.08997 * 109.52540 * 330.12633 * 11 10 9 28 28 H 1.08997 * 109.50491 * 62.43615 * 12 11 10 29 29 H 1.09000 * 109.53687 * 302.34063 * 12 11 10 30 30 H 1.09003 * 109.46008 * 299.16111 * 13 12 11 31 31 H 1.08999 * 109.45452 * 179.19405 * 13 12 11 32 32 H 1.09003 * 109.47526 * 49.99792 * 15 14 13 33 33 H 1.09001 * 109.47224 * 289.99946 * 15 14 13 34 34 H 1.08000 * 120.00376 * 359.97438 * 17 16 15 35 35 H 1.08000 * 120.00616 * 179.72578 * 18 17 16 36 36 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.00107 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.00147 * 180.10835 * 21 20 19 39 39 H 1.09000 * 109.46010 * 181.75754 * 22 14 13 40 40 H 1.09005 * 109.45940 * 301.72671 * 22 14 13 41 41 H 1.09006 * 109.50538 * 180.87622 * 23 22 14 42 42 H 1.09007 * 109.50255 * 60.76211 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.5651 -4.8753 -0.0024 12 6 2.4736 -5.8753 0.7181 13 6 1.8383 -7.2665 0.6623 14 7 1.6543 -7.6663 -0.7386 15 6 1.1748 -9.0516 -0.8322 16 6 0.7653 -9.3466 -2.2521 17 6 1.6899 -9.8504 -3.1477 18 6 1.3141 -10.1215 -4.4501 19 6 0.0134 -9.8894 -4.8567 20 6 -0.9110 -9.3846 -3.9613 21 6 -0.5354 -9.1143 -2.6587 22 6 0.7475 -6.7472 -1.4384 23 6 1.3503 -5.3406 -1.4453 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 0.6044 -4.8215 0.5097 28 1 2.5957 -5.5724 1.7580 29 1 3.4477 -5.9004 0.2296 30 1 0.8707 -7.2442 1.1637 31 1 2.4897 -7.9834 1.1621 32 1 0.3180 -9.1850 -0.1717 33 1 1.9721 -9.7329 -0.5351 34 1 2.7060 -10.0322 -2.8300 35 1 2.0375 -10.5110 -5.1510 36 1 -0.2802 -10.1008 -5.8743 37 1 -1.9271 -9.2028 -4.2791 38 1 -1.2581 -8.7217 -1.9587 39 1 0.6067 -7.0871 -2.4644 40 1 -0.2150 -6.7273 -0.9271 41 1 0.6699 -4.6555 -1.9512 42 1 2.3065 -5.3570 -1.9685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002557557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:17 Heat of formation + Delta-G solvation = -46.585565 kcal Electronic energy + Delta-G solvation = -20918.707037 eV Core-core repulsion = 17862.213166 eV Total energy + Delta-G solvation = -3056.493870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89140 -39.68235 -37.96479 -35.11111 -34.07487 -32.08599 -31.71572 -31.32294 -29.34061 -26.87207 -24.79225 -24.24306 -23.52280 -23.34854 -21.80631 -20.83085 -18.68012 -17.70833 -17.56638 -17.05265 -16.41958 -16.32168 -16.21046 -15.90745 -15.53930 -15.18605 -15.04584 -14.35156 -14.24133 -14.17590 -13.85297 -13.60423 -13.35873 -13.02402 -12.96821 -12.92826 -12.77152 -12.28192 -12.17279 -12.13469 -12.04078 -11.82050 -11.67312 -11.38664 -11.26002 -10.83520 -10.16895 -9.77190 -9.70541 -9.23874 -8.34264 -6.47282 0.42551 0.53446 1.38672 1.41830 1.53983 2.33171 2.72285 2.99194 3.09416 3.16522 3.71940 3.82356 3.92848 3.97933 4.14098 4.17924 4.21479 4.29271 4.32857 4.38636 4.49236 4.58667 4.64482 4.69535 4.74974 4.80104 4.82780 4.85583 4.94835 5.03822 5.09792 5.13511 5.19323 5.26765 5.28598 5.54229 5.58325 5.65363 5.71813 5.94208 6.04555 6.08083 6.16425 6.52406 6.80893 7.25043 8.78093 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.003312 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.247823 B = 8452.504347 C = 8953.414740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.213 3.787 10 O -0.404 6.404 11 C 0.078 3.922 12 C -0.105 4.105 13 C 0.067 3.933 14 N -0.539 5.539 15 C 0.096 3.904 16 C -0.095 4.095 17 C -0.110 4.110 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.127 4.127 22 C 0.071 3.929 23 C -0.130 4.130 24 H 0.271 0.729 25 H -0.017 1.017 26 H -0.017 1.017 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.106 0.894 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.048 0.952 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -22.875 -5.188 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.080 0.920 9 C 0.138 3.862 10 O -0.324 6.324 11 C 0.020 3.980 12 C -0.143 4.143 13 C -0.060 4.060 14 N -0.264 5.264 15 C -0.031 4.031 16 C -0.095 4.095 17 C -0.129 4.129 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.057 4.057 23 C -0.168 4.168 24 H 0.080 0.920 25 H 0.001 0.999 26 H 0.000 1.000 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.581 -22.719 -5.389 23.356 hybrid contribution -1.117 1.069 0.332 1.582 sum -0.536 -21.649 -5.057 22.239 Atomic orbital electron populations 1.70072 1.07799 1.28704 1.50378 1.25991 0.95992 1.03457 0.93778 0.85161 0.78386 0.76844 0.78894 1.19245 1.19758 1.18792 1.21408 0.94129 0.90885 1.52455 0.92016 1.19807 0.88538 0.84728 0.93109 1.87844 1.35500 1.14222 1.94872 1.22251 0.95815 0.84220 0.95755 1.21594 0.99248 0.93043 1.00390 1.22061 1.00084 0.95636 0.88263 1.62065 1.48138 1.01947 1.14253 1.21129 0.99931 0.89339 0.92662 1.19877 0.93949 0.99578 0.96097 1.21251 0.99575 0.98461 0.93586 1.21462 0.96879 1.00081 0.96277 1.21472 0.93664 0.99031 1.00437 1.21394 1.00626 0.99444 0.93520 1.21259 0.96018 1.00258 0.96987 1.21990 0.93093 0.90837 0.99804 1.21985 1.01390 0.96323 0.97140 0.91988 0.99878 0.99957 0.94449 0.90772 0.91010 0.94398 0.87560 0.93333 0.88183 0.84997 0.84240 0.84277 0.84735 0.86175 0.89721 0.95061 0.93354 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.98 45.10 29.54 68.60 2.03 47.12 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -33.83 9.43 25.60 0.24 -33.59 16 8 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 9 C 0.21 12.47 5.50 71.24 0.39 12.86 16 10 O -0.40 -20.84 9.98 -148.98 -1.49 -22.33 16 11 C 0.08 3.10 2.68 30.67 0.08 3.18 16 12 C -0.10 -3.27 5.75 30.65 0.18 -3.10 16 13 C 0.07 1.58 5.42 86.33 0.47 2.05 16 14 N -0.54 -13.13 4.80 -900.93 -4.32 -17.45 16 15 C 0.10 1.82 5.43 85.56 0.46 2.28 16 16 C -0.09 -1.89 4.12 -19.87 -0.08 -1.97 16 17 C -0.11 -2.06 9.70 22.27 0.22 -1.84 16 18 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 19 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 20 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 21 C -0.13 -2.50 7.80 22.27 0.17 -2.32 16 22 C 0.07 1.99 4.58 86.32 0.40 2.39 16 23 C -0.13 -4.70 5.72 30.65 0.18 -4.53 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.02 -1.01 7.96 -2.38 -0.02 -1.03 16 26 H -0.02 -1.05 8.09 -2.39 -0.02 -1.07 16 27 H 0.04 1.53 7.79 -2.39 -0.02 1.51 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.94 8.12 -2.39 -0.02 1.92 16 32 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 33 H 0.10 1.57 8.09 -2.39 -0.02 1.55 16 34 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.12 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.08 2.33 5.64 -2.39 -0.01 2.32 16 40 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.05 1.90 7.96 -2.38 -0.02 1.88 16 42 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -69.05 339.45 1.30 -67.75 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.97 Total: 11.29 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.84 Total: -29.75 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -4.04 Total: -74.08 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -1.49 Total: -22.33 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.05 1.30 -67.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002557557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.160 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds