Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47354 * 2 1 4 4 C 1.53004 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47308 * 60.00294 * 4 3 2 6 6 N 1.46508 * 109.47046 * 59.99744 * 5 4 3 7 7 C 1.39782 * 119.99596 * 155.00100 * 6 5 4 8 8 C 1.38952 * 120.00069 * 179.97438 * 7 6 5 9 9 C 1.38007 * 119.99068 * 180.02562 * 8 7 6 10 10 C 1.38902 * 120.00707 * 0.02562 * 9 8 7 11 11 O 1.35799 * 119.99285 * 179.97438 * 10 9 8 12 12 C 1.34809 * 117.00240 * 5.54212 * 11 10 9 13 13 H 1.08002 * 120.00081 * 354.94518 * 12 11 10 14 14 C 1.38619 * 120.00270 * 174.94443 * 12 11 10 15 15 N 1.31585 * 120.00083 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00318 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47327 * 89.99597 * 16 14 12 18 18 H 1.48505 * 109.47244 * 210.00161 * 16 14 12 19 19 H 1.48508 * 109.46905 * 329.99933 * 16 14 12 20 20 C 1.38898 * 120.01226 * 0.25730 * 10 9 8 21 21 C 1.38012 * 120.00332 * 359.44679 * 20 10 9 22 22 C 1.53002 * 109.46822 * 300.00078 * 5 4 3 23 23 C 1.53001 * 109.46888 * 240.00034 * 2 1 3 24 24 H 1.09003 * 109.46976 * 59.99770 * 1 2 3 25 25 H 1.08996 * 109.47330 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47143 * 299.99627 * 1 2 3 27 27 H 1.08994 * 109.47215 * 120.00373 * 2 1 3 28 28 H 1.09002 * 109.47122 * 60.00331 * 3 2 1 29 29 H 1.09003 * 109.47266 * 300.00052 * 3 2 1 30 30 H 1.09003 * 109.47077 * 300.00150 * 4 3 2 31 31 H 1.09005 * 109.47266 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47464 * 179.97438 * 5 4 3 33 33 H 0.96992 * 119.99615 * 335.00087 * 6 5 4 34 34 H 1.08001 * 120.00614 * 359.97438 * 8 7 6 35 35 H 1.08006 * 119.99831 * 180.02562 * 9 8 7 36 36 H 0.96997 * 120.00089 * 180.02562 * 15 14 12 37 37 H 1.07997 * 119.99637 * 179.70063 * 20 10 9 38 38 H 1.07995 * 120.00083 * 180.27172 * 21 20 10 39 39 H 1.09002 * 109.47157 * 179.97438 * 22 5 4 40 40 H 1.08994 * 109.47110 * 299.99578 * 22 5 4 41 41 H 1.08999 * 109.47598 * 299.99793 * 23 2 1 42 42 H 1.09003 * 109.47152 * 60.00303 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0795 0.7214 -1.2502 6 7 3.5906 1.4122 -2.4461 7 6 4.2921 1.3058 -3.6505 8 6 3.8283 1.9606 -4.7849 9 6 4.5207 1.8550 -5.9740 10 6 5.6809 1.0938 -6.0369 11 8 6.3618 0.9896 -7.2073 12 6 5.9245 1.7395 -8.2387 13 1 5.0212 2.3229 -8.1373 14 6 6.6340 1.7620 -9.4293 15 7 7.7348 1.0516 -9.5526 16 14 6.0285 2.8016 -10.8581 17 1 6.6207 4.1603 -10.7677 18 1 6.4352 2.1685 -12.1384 19 1 4.5478 2.9025 -10.8043 20 6 6.1416 0.4344 -4.9046 21 6 5.4528 0.5447 -3.7137 22 6 3.5694 -0.7211 -1.2502 23 6 2.0399 -0.7213 -1.2493 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9283 0.8891 31 1 3.9335 2.4700 -0.0002 32 1 5.1695 0.7217 -1.2509 33 1 2.7803 1.9434 -2.4020 34 1 2.9255 2.5514 -4.7363 35 1 4.1605 2.3642 -6.8557 36 1 8.2315 1.0676 -10.3856 37 1 7.0410 -0.1612 -4.9550 38 1 5.8135 0.0355 -2.8322 39 1 3.9320 -1.2347 -2.1407 40 1 3.9331 -1.2351 -0.3606 41 1 1.6766 -1.7489 -1.2493 42 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020126399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -20.669734 kcal Electronic energy + Delta-G solvation = -21014.467066 eV Core-core repulsion = 17959.096991 eV Total energy + Delta-G solvation = -3055.370076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.71712 -38.58905 -36.59477 -34.12023 -32.13197 -31.06787 -30.92992 -30.02680 -27.14065 -26.11340 -24.92382 -22.81525 -22.13896 -21.22107 -20.82797 -19.12589 -17.75537 -17.01542 -16.52938 -15.39776 -15.27381 -14.45004 -14.38740 -14.33661 -13.89616 -13.65268 -13.59363 -13.32406 -12.95904 -12.69217 -12.41869 -12.28292 -12.08101 -11.83014 -11.65971 -11.54671 -11.47995 -11.20018 -11.08044 -10.94303 -10.68481 -10.45999 -10.30758 -10.23521 -10.10049 -9.18278 -9.11326 -8.39418 -8.12102 -6.33238 -6.28912 -3.86248 2.24987 2.63075 3.20363 3.21313 3.25474 3.90212 4.08785 4.55115 4.58352 4.61873 4.73889 4.99217 5.12504 5.22852 5.24944 5.28784 5.41823 5.42191 5.47050 5.51822 5.58461 5.66152 5.71724 5.80412 5.84006 5.90116 5.94187 6.00948 6.11160 6.15135 6.26362 6.27911 6.34217 6.37999 6.61339 6.91559 6.97389 7.19376 7.36326 7.50451 7.70093 8.06296 8.15506 8.32738 9.16860 9.92254 10.89707 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038147 B = 0.003337 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.817022 B = 8387.581506 C = 8659.224719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.160 3.840 6 N -0.751 5.751 7 C 0.129 3.871 8 C -0.145 4.145 9 C -0.189 4.189 10 C 0.112 3.888 11 O -0.190 6.190 12 C -0.386 4.386 13 H 0.088 0.912 14 C 0.035 3.965 15 N -0.870 5.870 16 Si 0.937 3.063 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.109 4.109 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.388 0.612 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.267 0.733 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 -0.500 18.626 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.150 4.150 4 C -0.164 4.164 5 C 0.053 3.947 6 N -0.386 5.386 7 C 0.031 3.969 8 C -0.167 4.167 9 C -0.209 4.209 10 C 0.059 3.941 11 O -0.095 6.095 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.167 4.167 15 N -0.507 5.507 16 Si 0.762 3.238 17 H -0.201 1.201 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.170 4.170 21 C -0.170 4.170 22 C -0.176 4.176 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.223 0.777 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.857 -0.783 18.477 21.445 hybrid contribution -0.685 0.747 -0.737 1.253 sum -11.542 -0.036 17.740 21.164 Atomic orbital electron populations 1.21833 0.95560 1.01542 1.01559 1.21143 0.95146 0.96063 0.98657 1.21558 0.95426 0.96450 1.01609 1.21794 0.95940 1.00989 0.97657 1.20652 0.98182 0.90996 0.84840 1.44345 1.29783 1.57809 1.06710 1.17403 0.93796 0.99684 0.86061 1.20220 1.00882 1.03514 0.92106 1.20980 0.97388 1.04505 0.98043 1.19233 0.91809 0.95343 0.87673 1.83985 1.50755 1.59134 1.15622 1.21227 1.09630 1.25174 0.90233 0.89510 1.25205 0.95624 0.97785 0.98105 1.70050 1.15266 1.38849 1.26524 0.85773 0.78881 0.79263 0.79839 1.20087 1.20435 1.19385 1.20029 1.01703 1.04444 0.90817 1.20199 0.96189 1.03403 0.97161 1.22027 0.96074 0.97575 1.01891 1.21484 0.95611 0.99817 0.97756 0.92717 0.92854 0.92984 0.91526 0.92187 0.92010 0.91134 0.91527 0.90894 0.77708 0.87819 0.85629 0.92349 0.86646 0.87092 0.91342 0.92068 0.92593 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.09 -0.76 2.72 -90.63 -0.25 -1.01 16 3 C -0.11 -0.93 5.03 -26.73 -0.13 -1.06 16 4 C -0.13 -1.12 5.61 -26.73 -0.15 -1.27 16 5 C 0.16 1.77 2.48 -67.93 -0.17 1.61 16 6 N -0.75 -9.91 4.41 -52.11 -0.23 -10.14 16 7 C 0.13 2.21 6.64 -83.71 -0.56 1.66 16 8 C -0.14 -2.71 9.89 -39.40 -0.39 -3.10 16 9 C -0.19 -4.21 9.16 -39.42 -0.36 -4.58 16 10 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 11 O -0.19 -5.59 9.76 -0.04 0.00 -5.59 16 12 C -0.39 -11.12 9.48 30.87 0.29 -10.82 16 13 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 14 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 15 N -0.87 -26.32 13.67 55.48 0.76 -25.56 16 16 Si 0.94 21.17 29.55 -169.99 -5.02 16.14 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 C -0.15 -3.25 9.98 -39.42 -0.39 -3.64 16 21 C -0.15 -2.68 8.84 -39.40 -0.35 -3.03 16 22 C -0.14 -1.46 5.54 -26.76 -0.15 -1.61 16 23 C -0.11 -1.09 5.04 -26.76 -0.13 -1.22 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 6.48 -51.93 -0.34 0.54 16 33 H 0.39 4.67 6.88 -40.82 -0.28 4.39 16 34 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.11 1.74 6.11 -52.49 -0.32 1.42 16 39 H 0.07 0.87 7.71 -51.93 -0.40 0.47 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.76 7.60 -51.93 -0.39 0.37 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -30.88 330.27 -8.69 -39.58 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.42 Total: 6.03 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -2.75 Total: -25.44 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.53 Total: -35.70 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.88 -8.69 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.909 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds