Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47354 * 2 1 4 4 C 1.53004 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47308 * 60.00294 * 4 3 2 6 6 N 1.46508 * 109.47046 * 59.99744 * 5 4 3 7 7 C 1.39782 * 119.99596 * 155.00100 * 6 5 4 8 8 C 1.38952 * 120.00069 * 179.97438 * 7 6 5 9 9 C 1.38007 * 119.99068 * 180.02562 * 8 7 6 10 10 C 1.38902 * 120.00707 * 0.02562 * 9 8 7 11 11 O 1.35799 * 119.99285 * 179.97438 * 10 9 8 12 12 C 1.34809 * 117.00240 * 5.54212 * 11 10 9 13 13 H 1.08002 * 120.00081 * 354.94518 * 12 11 10 14 14 C 1.38619 * 120.00270 * 174.94443 * 12 11 10 15 15 N 1.31585 * 120.00083 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00318 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47327 * 89.99597 * 16 14 12 18 18 H 1.48505 * 109.47244 * 210.00161 * 16 14 12 19 19 H 1.48508 * 109.46905 * 329.99933 * 16 14 12 20 20 C 1.38898 * 120.01226 * 0.25730 * 10 9 8 21 21 C 1.38012 * 120.00332 * 359.44679 * 20 10 9 22 22 C 1.53002 * 109.46822 * 300.00078 * 5 4 3 23 23 C 1.53001 * 109.46888 * 240.00034 * 2 1 3 24 24 H 1.09003 * 109.46976 * 59.99770 * 1 2 3 25 25 H 1.08996 * 109.47330 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47143 * 299.99627 * 1 2 3 27 27 H 1.08994 * 109.47215 * 120.00373 * 2 1 3 28 28 H 1.09002 * 109.47122 * 60.00331 * 3 2 1 29 29 H 1.09003 * 109.47266 * 300.00052 * 3 2 1 30 30 H 1.09003 * 109.47077 * 300.00150 * 4 3 2 31 31 H 1.09005 * 109.47266 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47464 * 179.97438 * 5 4 3 33 33 H 0.96992 * 119.99615 * 335.00087 * 6 5 4 34 34 H 1.08001 * 120.00614 * 359.97438 * 8 7 6 35 35 H 1.08006 * 119.99831 * 180.02562 * 9 8 7 36 36 H 0.96997 * 120.00089 * 180.02562 * 15 14 12 37 37 H 1.07997 * 119.99637 * 179.70063 * 20 10 9 38 38 H 1.07995 * 120.00083 * 180.27172 * 21 20 10 39 39 H 1.09002 * 109.47157 * 179.97438 * 22 5 4 40 40 H 1.08994 * 109.47110 * 299.99578 * 22 5 4 41 41 H 1.08999 * 109.47598 * 299.99793 * 23 2 1 42 42 H 1.09003 * 109.47152 * 60.00303 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0795 0.7214 -1.2502 6 7 3.5906 1.4122 -2.4461 7 6 4.2921 1.3058 -3.6505 8 6 3.8283 1.9606 -4.7849 9 6 4.5207 1.8550 -5.9740 10 6 5.6809 1.0938 -6.0369 11 8 6.3618 0.9896 -7.2073 12 6 5.9245 1.7395 -8.2387 13 1 5.0212 2.3229 -8.1373 14 6 6.6340 1.7620 -9.4293 15 7 7.7348 1.0516 -9.5526 16 14 6.0285 2.8016 -10.8581 17 1 6.6207 4.1603 -10.7677 18 1 6.4352 2.1685 -12.1384 19 1 4.5478 2.9025 -10.8043 20 6 6.1416 0.4344 -4.9046 21 6 5.4528 0.5447 -3.7137 22 6 3.5694 -0.7211 -1.2502 23 6 2.0399 -0.7213 -1.2493 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9283 0.8891 31 1 3.9335 2.4700 -0.0002 32 1 5.1695 0.7217 -1.2509 33 1 2.7803 1.9434 -2.4020 34 1 2.9255 2.5514 -4.7363 35 1 4.1605 2.3642 -6.8557 36 1 8.2315 1.0676 -10.3856 37 1 7.0410 -0.1612 -4.9550 38 1 5.8135 0.0355 -2.8322 39 1 3.9320 -1.2347 -2.1407 40 1 3.9331 -1.2351 -0.3606 41 1 1.6766 -1.7489 -1.2493 42 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020126399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -38.129761 kcal Electronic energy + Delta-G solvation = -21015.224190 eV Core-core repulsion = 17959.096991 eV Total energy + Delta-G solvation = -3056.127199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94610 -40.04237 -38.18357 -35.32071 -34.09774 -32.29562 -31.78958 -31.48362 -28.61180 -27.33034 -26.58625 -23.84797 -23.39155 -22.65171 -21.85005 -20.23851 -19.49221 -18.74858 -17.94924 -16.66696 -16.32801 -16.13882 -15.67184 -15.39976 -15.29832 -14.97981 -14.91070 -14.43645 -14.28034 -14.06872 -13.85048 -13.43063 -13.36100 -13.08291 -12.86845 -12.81407 -12.66556 -12.36924 -12.23525 -12.14027 -12.05194 -11.96716 -11.34649 -11.12247 -11.06281 -10.88496 -10.78975 -10.11018 -9.75506 -8.38744 -7.88187 -6.02157 0.60364 0.96307 1.36506 1.46712 1.53933 2.23096 2.72046 2.92653 3.27042 3.68822 3.82000 3.87639 3.89209 4.14752 4.18455 4.26473 4.33874 4.51611 4.56177 4.58790 4.66695 4.67914 4.73801 4.81633 4.90428 4.97132 5.03389 5.11977 5.13721 5.18718 5.23263 5.28842 5.31145 5.37711 5.42833 5.51714 5.54649 5.58333 5.64437 5.80538 6.02618 6.12561 6.69189 7.06345 7.10428 7.94837 8.85997 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038147 B = 0.003337 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.817022 B = 8387.581506 C = 8659.224719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.119 4.119 5 C 0.153 3.847 6 N -0.736 5.736 7 C 0.159 3.841 8 C -0.150 4.150 9 C -0.192 4.192 10 C 0.060 3.940 11 O -0.244 6.244 12 C -0.406 4.406 13 H 0.097 0.903 14 C -0.029 4.029 15 N -0.928 5.928 16 Si 1.017 2.983 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.254 1.254 20 C -0.155 4.155 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.108 4.108 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.141 0.859 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 0.476 21.339 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.149 4.149 4 C -0.157 4.157 5 C 0.047 3.953 6 N -0.370 5.370 7 C 0.058 3.942 8 C -0.172 4.172 9 C -0.212 4.212 10 C 0.010 3.990 11 O -0.152 6.152 12 C -0.482 4.482 13 H 0.115 0.885 14 C -0.225 4.225 15 N -0.568 5.568 16 Si 0.836 3.164 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.177 1.177 20 C -0.175 4.175 21 C -0.168 4.168 22 C -0.173 4.173 23 C -0.146 4.146 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.159 0.841 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.197 0.196 21.286 25.046 hybrid contribution -0.116 0.377 -1.182 1.246 sum -13.313 0.574 20.104 24.119 Atomic orbital electron populations 1.21822 0.95079 1.01718 1.01810 1.21110 0.95525 0.95982 0.97923 1.21563 0.94861 0.96384 1.02101 1.21756 0.96344 1.00862 0.96729 1.20895 0.98104 0.91476 0.84798 1.44478 1.29426 1.57155 1.05948 1.17520 0.92752 0.96870 0.87072 1.20475 1.01625 1.03945 0.91153 1.21035 0.96937 1.04001 0.99238 1.19719 0.93479 0.98255 0.87507 1.83931 1.52912 1.61118 1.17232 1.21751 1.10235 1.25399 0.90856 0.88527 1.26528 0.95705 0.99180 1.01086 1.70207 1.17327 1.41567 1.27674 0.84613 0.79033 0.77298 0.75414 1.18953 1.19727 1.17731 1.20235 1.01995 1.03991 0.91285 1.20440 0.96159 1.03440 0.96764 1.21993 0.96600 0.96962 1.01777 1.21469 0.95019 1.00035 0.98053 0.93297 0.92791 0.91916 0.90603 0.90701 0.92565 0.89378 0.91429 0.91281 0.76457 0.84621 0.86516 0.92165 0.87094 0.84127 0.93588 0.90140 0.92502 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.14 2.72 -10.80 -0.03 -1.17 16 3 C -0.11 -1.39 5.03 30.59 0.15 -1.24 16 4 C -0.12 -1.62 5.61 30.59 0.17 -1.45 16 5 C 0.15 2.87 2.48 44.99 0.11 2.98 16 6 N -0.74 -17.06 4.41 -318.78 -1.40 -18.46 16 7 C 0.16 5.13 6.64 38.21 0.25 5.38 16 8 C -0.15 -5.36 9.89 22.39 0.22 -5.14 16 9 C -0.19 -8.72 9.16 22.37 0.20 -8.52 16 10 C 0.06 3.11 6.65 22.59 0.15 3.26 16 11 O -0.24 -15.30 9.76 -23.07 -0.23 -15.52 16 12 C -0.41 -24.57 9.48 67.91 0.64 -23.93 16 13 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 14 C -0.03 -1.71 5.49 84.82 0.47 -1.25 16 15 N -0.93 -59.04 13.67 21.61 0.30 -58.74 16 16 Si 1.02 44.49 29.55 68.60 2.03 46.51 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 20 C -0.16 -6.91 9.98 22.37 0.22 -6.69 16 21 C -0.15 -5.13 8.84 22.39 0.20 -4.93 16 22 C -0.13 -2.48 5.54 30.58 0.17 -2.31 16 23 C -0.11 -1.86 5.04 30.58 0.15 -1.71 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.77 6.50 -2.39 -0.02 0.76 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 1.41 6.48 -2.39 -0.02 1.39 16 33 H 0.40 8.10 6.88 -92.71 -0.64 7.46 16 34 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.12 5.39 5.63 -2.91 -0.02 5.37 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.14 4.08 6.11 -2.91 -0.02 4.06 16 39 H 0.05 1.06 7.71 -2.39 -0.02 1.04 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 1.03 7.60 -2.39 -0.02 1.01 16 Total: -1.00 -71.73 330.27 4.82 -66.91 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.37 Total: 27.14 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 3.75 Total: -47.83 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.11 Total: -77.21 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.23 Total: -15.52 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.73 4.82 -66.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.780 kcal (2) G-P(sol) polarization free energy of solvation -71.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds