Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86808 * 119.99851 * 2 1 4 4 H 1.48494 * 109.47043 * 270.00216 * 3 2 1 5 5 H 1.48503 * 109.46902 * 29.99960 * 3 2 1 6 6 H 1.48503 * 109.46830 * 149.99786 * 3 2 1 7 7 C 1.38621 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99912 * 359.97438 * 7 2 1 9 9 O 1.34813 * 119.99912 * 180.02562 * 7 2 1 10 10 C 1.35795 * 117.00130 * 185.05467 * 9 7 2 11 11 C 1.38908 * 119.99061 * 354.45498 * 10 9 7 12 12 C 1.38009 * 120.00451 * 180.02562 * 11 10 9 13 13 C 1.38950 * 119.99487 * 359.97438 * 12 11 10 14 14 N 1.39782 * 120.00533 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99809 * 180.02562 * 14 13 12 16 16 C 1.50470 * 109.62832 * 85.96619 * 15 14 13 17 17 C 1.54076 * 112.49949 * 213.85573 * 16 15 14 18 18 C 1.54065 * 112.81620 * 318.28122 * 17 16 15 19 19 C 1.50475 * 112.49763 * 318.28541 * 18 17 16 20 20 C 1.54245 * 108.51506 * 94.15383 * 19 18 17 21 21 C 1.45542 * 112.40876 * 280.00067 * 20 19 18 22 22 C 1.38947 * 119.98920 * 0.26192 * 13 12 11 23 23 C 1.38020 * 119.99096 * 359.48336 * 22 13 12 24 24 H 0.96996 * 120.00154 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99294 * 0.02562 * 11 10 9 26 26 H 1.08001 * 120.00076 * 179.97438 * 12 11 10 27 27 H 0.96998 * 119.99855 * 0.02562 * 14 13 12 28 28 H 1.08998 * 109.62684 * 325.38205 * 15 14 13 29 29 H 1.08992 * 108.87952 * 334.63269 * 16 15 14 30 30 H 1.08999 * 108.88080 * 93.18152 * 16 15 14 31 31 H 1.09001 * 108.81389 * 197.42511 * 17 16 15 32 32 H 1.08996 * 108.80976 * 79.14024 * 17 16 15 33 33 H 1.08996 * 108.87849 * 197.50565 * 18 17 16 34 34 H 1.09000 * 108.87474 * 79.05859 * 18 17 16 35 35 H 1.09000 * 109.62931 * 213.85968 * 19 18 17 36 36 H 1.09001 * 109.62653 * 334.25368 * 19 18 17 37 37 H 1.09005 * 108.89274 * 40.75732 * 20 19 18 38 38 H 1.08998 * 108.88920 * 159.34348 * 20 19 18 39 39 H 1.09002 * 108.89145 * 182.68964 * 21 20 19 40 40 H 1.08994 * 108.89704 * 301.28142 * 21 20 19 41 41 H 1.08002 * 120.00687 * 179.74221 * 22 13 12 42 42 H 1.07998 * 119.99359 * 180.23202 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0090 -1.2005 -0.0005 8 1 1.4690 -2.1357 -0.0005 9 8 3.3571 -1.2004 0.0000 10 6 3.9737 -2.4055 -0.1072 11 6 3.2221 -3.5736 -0.0949 12 6 3.8486 -4.7985 -0.2032 13 6 5.2312 -4.8633 -0.3252 14 7 5.8660 -6.1039 -0.4344 15 6 7.3237 -6.1720 -0.5625 16 6 7.9524 -6.1581 0.8045 17 6 9.3063 -5.4230 0.8235 18 6 10.1811 -5.7505 -0.4018 19 6 10.1447 -7.2112 -0.7614 20 6 9.0603 -7.4238 -1.8375 21 6 7.7208 -7.4831 -1.2713 22 6 5.9832 -3.6949 -0.3326 23 6 5.3558 -2.4699 -0.2294 24 1 -0.4850 0.8400 0.0004 25 1 2.1474 -3.5231 -0.0005 26 1 3.2641 -5.7067 -0.1932 27 1 5.3412 -6.9196 -0.4255 28 1 7.6806 -5.3202 -1.1414 29 1 7.2735 -5.6647 1.4999 30 1 8.1064 -7.1862 1.1324 31 1 9.8470 -5.7054 1.7268 32 1 9.1228 -4.3489 0.8474 33 1 11.2109 -5.4660 -0.1861 34 1 9.8274 -5.1688 -1.2531 35 1 11.1148 -7.5159 -1.1540 36 1 9.9064 -7.8004 0.1241 37 1 9.1056 -6.6015 -2.5516 38 1 9.2620 -8.3578 -2.3620 39 1 7.0079 -7.6817 -2.0715 40 1 7.6782 -8.2994 -0.5504 41 1 7.0583 -3.7451 -0.4232 42 1 5.9400 -1.5616 -0.2389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020126400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = -30.593440 kcal Electronic energy + Delta-G solvation = -21070.925770 eV Core-core repulsion = 18015.125370 eV Total energy + Delta-G solvation = -3055.800400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99042 -40.09084 -38.36275 -35.50492 -34.29905 -33.34991 -32.06236 -31.43150 -28.79342 -26.94871 -25.51689 -24.90955 -23.79080 -22.23537 -21.44310 -20.22273 -19.52076 -19.08178 -17.74860 -17.25617 -16.44503 -15.95546 -15.75614 -15.58237 -15.46548 -15.34456 -14.70495 -14.52265 -14.29325 -14.07709 -14.05960 -13.83923 -13.70454 -13.18391 -13.00771 -12.94929 -12.63999 -12.45243 -11.99997 -11.91279 -11.67177 -11.55650 -11.29041 -11.26876 -11.17374 -10.99686 -10.92476 -10.24837 -9.79822 -8.43203 -7.96545 -6.10869 0.56345 0.89277 1.33271 1.38159 1.54916 2.33110 2.63778 2.84995 3.17535 3.30210 3.68712 3.80101 4.06781 4.13167 4.14482 4.26950 4.33257 4.37202 4.47077 4.55087 4.56976 4.59546 4.65224 4.89285 4.93567 5.02473 5.08101 5.12298 5.23189 5.27730 5.30535 5.34603 5.38132 5.39781 5.46134 5.49714 5.54270 5.61170 5.63918 5.84804 5.86925 6.15883 6.64545 6.92645 7.05843 7.73277 8.69316 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.003541 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.176576 B = 7904.948777 C = 8385.774601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.391 4.391 8 H 0.077 0.923 9 O -0.255 6.255 10 C 0.065 3.935 11 C -0.186 4.186 12 C -0.153 4.153 13 C 0.164 3.836 14 N -0.742 5.742 15 C 0.158 3.842 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.148 4.148 23 C -0.142 4.142 24 H 0.282 0.718 25 H 0.107 0.893 26 H 0.134 0.866 27 H 0.401 0.599 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.748 -16.230 -1.703 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.468 4.468 8 H 0.095 0.905 9 O -0.164 6.164 10 C 0.017 3.983 11 C -0.206 4.206 12 C -0.175 4.175 13 C 0.063 3.937 14 N -0.375 5.375 15 C 0.053 3.947 16 C -0.169 4.169 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.170 4.170 23 C -0.162 4.162 24 H 0.092 0.908 25 H 0.125 0.875 26 H 0.152 0.848 27 H 0.236 0.764 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.161 0.839 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 21.857 -15.870 -1.701 27.065 hybrid contribution -0.919 0.485 0.151 1.050 sum 20.938 -15.385 -1.550 26.029 Atomic orbital electron populations 1.69750 1.06870 1.29295 1.51491 1.25253 0.95874 1.02086 0.96058 0.85203 0.78745 0.77506 0.79151 1.19183 1.19385 1.18791 1.20679 0.78535 0.95868 1.51720 0.90505 1.83500 1.20702 1.27310 1.84868 1.19440 0.93049 0.85107 1.00714 1.21070 0.99848 0.92715 1.06976 1.20469 0.93221 0.96760 1.07059 1.17553 0.90730 0.86907 0.98538 1.44543 1.05928 1.03805 1.83228 1.20637 0.79282 0.98963 0.95831 1.21869 0.96346 1.01360 0.97366 1.21865 0.94870 0.99742 0.98831 1.21373 0.99655 0.97115 0.97671 1.21349 0.98881 0.96207 0.98886 1.20424 0.93958 1.02625 0.98296 1.20675 0.98045 0.96213 1.00521 1.20490 0.99712 0.89741 1.07087 1.20279 0.90528 0.99006 1.06366 0.90847 0.87473 0.84848 0.76374 0.91170 0.93475 0.91182 0.91657 0.92997 0.91634 0.92496 0.91035 0.91411 0.92366 0.90865 0.91723 0.90963 0.83912 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.96 21.61 0.30 -57.19 16 2 C 0.00 0.25 5.49 84.82 0.47 0.71 16 3 Si 0.97 47.11 28.62 68.60 1.96 49.08 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.39 -23.91 9.94 67.91 0.68 -23.24 16 8 H 0.08 4.91 5.43 -2.91 -0.02 4.90 16 9 O -0.25 -14.42 8.58 -23.07 -0.20 -14.61 16 10 C 0.07 3.18 6.65 22.59 0.15 3.33 16 11 C -0.19 -8.51 9.16 22.38 0.20 -8.30 16 12 C -0.15 -5.48 9.89 22.39 0.22 -5.26 16 13 C 0.16 5.13 6.56 38.21 0.25 5.38 16 14 N -0.74 -16.83 5.13 -320.69 -1.64 -18.48 16 15 C 0.16 2.88 1.81 44.60 0.08 2.96 16 16 C -0.13 -2.30 4.98 30.14 0.15 -2.15 16 17 C -0.11 -1.78 5.86 31.32 0.18 -1.60 16 18 C -0.12 -1.56 5.31 30.14 0.16 -1.40 16 19 C -0.12 -1.26 5.60 30.20 0.17 -1.09 16 20 C -0.12 -1.34 5.26 28.74 0.15 -1.18 16 21 C -0.12 -1.58 4.77 28.74 0.14 -1.44 16 22 C -0.15 -4.83 9.18 22.39 0.21 -4.63 16 23 C -0.14 -5.68 9.98 22.37 0.22 -5.46 16 24 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 25 H 0.11 5.37 5.63 -2.91 -0.02 5.35 16 26 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 27 H 0.40 7.75 8.63 -92.71 -0.80 6.95 16 28 H 0.07 1.43 5.33 -2.39 -0.01 1.41 16 29 H 0.05 1.06 7.86 -2.39 -0.02 1.04 16 30 H 0.07 1.07 6.63 -2.39 -0.02 1.06 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.80 6.64 -2.39 -0.02 0.79 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.74 6.99 -2.39 -0.02 0.72 16 37 H 0.06 0.75 7.47 -2.38 -0.02 0.73 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.07 0.86 7.47 -2.39 -0.02 0.85 16 41 H 0.14 3.81 6.21 -2.91 -0.02 3.80 16 42 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -67.67 325.61 4.07 -63.60 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.22 Total: 20.97 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 3.43 Total: -43.36 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -1.34 Total: -75.67 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.20 Total: -14.61 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.96 Total: 49.08 kcal Total: -67.67 4.07 -63.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.007 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds