Wall clock time and date at job start Mon Mar 30 2020 01:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47007 * 269.99995 * 3 2 1 5 5 H 1.48501 * 109.47183 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47301 * 149.99857 * 3 2 1 7 7 C 1.38619 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 0.02562 * 7 2 1 9 9 O 1.34814 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.35799 * 116.99888 * 174.94461 * 9 7 2 11 11 C 1.38903 * 119.99079 * 185.26512 * 10 9 7 12 12 C 1.38007 * 120.00342 * 179.72382 * 11 10 9 13 13 C 1.38956 * 119.99360 * 0.57111 * 12 11 10 14 14 N 1.39778 * 120.00514 * 179.72155 * 13 12 11 15 15 C 1.46500 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.53005 * 109.47092 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47008 * 294.99816 * 16 15 14 18 18 C 1.52998 * 109.47125 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47038 * 60.00138 * 18 17 16 20 20 C 1.53002 * 109.47179 * 300.00200 * 19 18 17 21 21 C 1.52994 * 109.47080 * 174.99879 * 16 15 14 22 22 C 1.38952 * 119.98705 * 359.70508 * 13 12 11 23 23 C 1.38016 * 119.99267 * 359.97438 * 22 13 12 24 24 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99459 * 359.97438 * 11 10 9 26 26 H 1.07996 * 120.00426 * 180.27818 * 12 11 10 27 27 H 0.97006 * 119.99683 * 179.97438 * 14 13 12 28 28 H 1.08999 * 109.47174 * 299.99488 * 15 14 13 29 29 H 1.08994 * 109.47227 * 59.99818 * 15 14 13 30 30 H 1.09002 * 109.47169 * 54.99695 * 16 15 14 31 31 H 1.08997 * 109.47490 * 299.99908 * 17 16 15 32 32 H 1.09001 * 109.47012 * 60.00137 * 17 16 15 33 33 H 1.09002 * 109.47728 * 300.00329 * 18 17 16 34 34 H 1.09004 * 109.47369 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.47417 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47173 * 59.99817 * 19 18 17 37 37 H 1.09002 * 109.46755 * 299.99873 * 20 19 18 38 38 H 1.08996 * 109.46910 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47618 * 299.99900 * 21 16 15 40 40 H 1.09002 * 109.47269 * 59.99878 * 21 16 15 41 41 H 1.07995 * 120.00417 * 180.02562 * 22 13 12 42 42 H 1.08002 * 119.99302 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0090 -1.2005 0.0005 8 1 1.4690 -2.1358 0.0005 9 8 3.3571 -1.2004 0.0011 10 6 3.9736 -2.4057 0.1082 11 6 5.3562 -2.4704 0.2253 12 6 5.9825 -3.6948 0.3399 13 6 5.2309 -4.8635 0.3262 14 7 5.8655 -6.1040 0.4365 15 6 7.3232 -6.1721 0.5659 16 6 7.7582 -7.6354 0.6693 17 6 7.2083 -8.2407 1.9624 18 6 7.6427 -9.7040 2.0656 19 6 9.1706 -9.7830 2.0750 20 6 9.7205 -9.1777 0.7819 21 6 9.2860 -7.7138 0.6789 22 6 3.8483 -4.7986 0.2033 23 6 3.2220 -3.5736 0.0954 24 1 -0.4850 0.8400 0.0004 25 1 5.9406 -1.5622 0.2307 26 1 7.0570 -3.7449 0.4355 27 1 5.3407 -6.9198 0.4273 28 1 7.7873 -5.7158 -0.3084 29 1 7.6337 -5.6369 1.4631 30 1 7.3712 -8.1908 -0.1850 31 1 7.5952 -7.6854 2.8168 32 1 6.1197 -8.1848 1.9556 33 1 7.2554 -10.2592 1.2112 34 1 7.2506 -10.1354 2.9867 35 1 9.4802 -10.8255 2.1490 36 1 9.5579 -9.2279 2.9294 37 1 9.3332 -9.7328 -0.0725 38 1 10.8090 -9.2344 0.7884 39 1 9.6779 -7.2826 -0.2423 40 1 9.6730 -7.1584 1.5333 41 1 3.2639 -5.7067 0.1930 42 1 2.1473 -3.5232 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020126432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:03 Heat of formation + Delta-G solvation = -25.989277 kcal Electronic energy + Delta-G solvation = -20445.752200 eV Core-core repulsion = 17390.151452 eV Total energy + Delta-G solvation = -3055.600748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.41771 -38.82763 -37.05165 -34.57505 -32.25495 -31.41984 -30.97743 -30.21558 -27.62317 -25.66383 -24.39933 -22.84502 -22.36940 -21.23645 -20.43578 -19.98447 -17.67860 -17.29412 -16.55504 -15.50148 -15.39353 -14.85720 -14.45164 -14.38737 -14.13583 -13.79120 -13.61287 -13.58094 -13.18307 -12.68526 -12.51196 -12.43889 -12.24748 -12.07349 -11.96715 -11.54688 -11.43851 -11.35173 -11.18779 -10.81272 -10.71299 -10.58294 -10.34514 -10.28326 -10.06755 -9.26718 -9.16883 -8.51622 -8.21593 -6.46272 -6.28271 -3.92629 2.15034 2.50883 3.30542 3.32876 3.48569 3.80487 4.34634 4.37650 4.45587 4.48808 4.63650 4.87518 4.97821 5.03597 5.07109 5.18843 5.22049 5.23862 5.24010 5.36618 5.54774 5.60387 5.64091 5.67844 5.72340 5.74755 5.86176 5.88814 5.91991 6.00485 6.07159 6.16569 6.20085 6.23711 6.48304 6.81552 6.85356 7.04245 7.37894 7.52039 7.82544 7.96461 8.13452 8.25099 9.08409 9.74963 10.80373 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.050560 B = 0.002866 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.662471 B = 9767.137146 C =10130.359927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.383 4.383 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.116 3.884 11 C -0.149 4.149 12 C -0.150 4.150 13 C 0.133 3.867 14 N -0.758 5.758 15 C 0.138 3.862 16 C -0.096 4.096 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.175 4.175 24 H 0.277 0.723 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.390 0.610 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.630 -17.802 2.612 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.459 4.459 8 H 0.120 0.880 9 O -0.135 6.135 10 C 0.065 3.935 11 C -0.169 4.169 12 C -0.172 4.172 13 C 0.035 3.965 14 N -0.394 5.394 15 C 0.013 3.987 16 C -0.115 4.115 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.167 4.167 23 C -0.195 4.195 24 H 0.087 0.913 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.224 0.776 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.126 0.874 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.712 -17.364 2.608 24.941 hybrid contribution -0.119 0.331 -0.020 0.353 sum 17.593 -17.033 2.587 24.624 Atomic orbital electron populations 1.69664 1.05491 1.28142 1.49541 1.24426 0.94996 0.98670 0.96176 0.86180 0.80284 0.81636 0.78763 1.20090 1.21067 1.18445 1.20707 0.77247 0.96368 1.51613 0.87971 1.83573 1.22160 1.25437 1.82358 1.18959 0.91592 0.85600 0.97354 1.20010 0.91911 0.97245 1.07723 1.20158 0.98186 0.90735 1.08150 1.17462 0.91347 0.85384 1.02319 1.44264 1.04904 1.04870 1.85357 1.21168 0.81930 0.95386 1.00256 1.21356 0.95862 0.95689 0.98620 1.21577 1.00685 0.95430 0.97409 1.21546 0.95717 0.96836 1.01678 1.21544 0.95801 1.00448 0.97985 1.21525 1.00158 0.95965 0.97942 1.21515 0.94643 0.96678 1.02175 1.20288 0.92086 0.97270 1.07101 1.21106 1.00895 0.91360 1.06144 0.91342 0.86608 0.87049 0.77574 0.93110 0.93082 0.90823 0.91834 0.91742 0.92115 0.92127 0.92303 0.92038 0.92057 0.92076 0.91761 0.91709 0.87421 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.48 0.77 -25.62 16 2 C 0.06 1.70 5.49 -17.52 -0.10 1.60 16 3 Si 0.91 22.34 28.62 -169.99 -4.86 17.48 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.38 -11.10 9.94 30.87 0.31 -10.79 16 8 H 0.10 3.01 5.43 -52.48 -0.28 2.73 16 9 O -0.23 -6.22 8.58 -0.06 0.00 -6.22 16 10 C 0.12 2.75 6.65 -39.09 -0.26 2.49 16 11 C -0.15 -3.04 9.98 -39.42 -0.39 -3.44 16 12 C -0.15 -2.64 9.31 -39.40 -0.37 -3.01 16 13 C 0.13 2.26 6.66 -83.70 -0.56 1.71 16 14 N -0.76 -9.90 5.46 -58.58 -0.32 -10.22 16 15 C 0.14 1.48 4.30 -4.04 -0.02 1.47 16 16 C -0.10 -0.81 2.22 -90.62 -0.20 -1.01 16 17 C -0.11 -0.94 5.08 -26.73 -0.14 -1.07 16 18 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 19 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 20 C -0.12 -0.78 5.93 -26.71 -0.16 -0.94 16 21 C -0.11 -0.82 5.21 -26.71 -0.14 -0.96 16 22 C -0.15 -2.69 9.89 -39.40 -0.39 -3.08 16 23 C -0.18 -3.87 9.16 -39.42 -0.36 -4.23 16 24 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 26 H 0.11 1.67 6.73 -52.49 -0.35 1.32 16 27 H 0.39 4.53 7.67 -40.82 -0.31 4.22 16 28 H 0.05 0.57 7.95 -51.93 -0.41 0.15 16 29 H 0.05 0.58 7.95 -51.93 -0.41 0.16 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.13 3.07 5.63 -52.49 -0.30 2.78 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -30.13 333.98 -9.12 -39.25 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.65 Total: 3.53 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.09 Total: -23.24 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.45 Total: -35.84 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.00 Total: -6.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.13 -9.12 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.260 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds