Wall clock time and date at job start Mon Mar 30 2020 01:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47007 * 269.99995 * 3 2 1 5 5 H 1.48501 * 109.47183 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47301 * 149.99857 * 3 2 1 7 7 C 1.38619 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 0.02562 * 7 2 1 9 9 O 1.34814 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.35799 * 116.99888 * 174.94461 * 9 7 2 11 11 C 1.38903 * 119.99079 * 185.26512 * 10 9 7 12 12 C 1.38007 * 120.00342 * 179.72382 * 11 10 9 13 13 C 1.38956 * 119.99360 * 0.57111 * 12 11 10 14 14 N 1.39778 * 120.00514 * 179.72155 * 13 12 11 15 15 C 1.46500 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.53005 * 109.47092 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47008 * 294.99816 * 16 15 14 18 18 C 1.52998 * 109.47125 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47038 * 60.00138 * 18 17 16 20 20 C 1.53002 * 109.47179 * 300.00200 * 19 18 17 21 21 C 1.52994 * 109.47080 * 174.99879 * 16 15 14 22 22 C 1.38952 * 119.98705 * 359.70508 * 13 12 11 23 23 C 1.38016 * 119.99267 * 359.97438 * 22 13 12 24 24 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99459 * 359.97438 * 11 10 9 26 26 H 1.07996 * 120.00426 * 180.27818 * 12 11 10 27 27 H 0.97006 * 119.99683 * 179.97438 * 14 13 12 28 28 H 1.08999 * 109.47174 * 299.99488 * 15 14 13 29 29 H 1.08994 * 109.47227 * 59.99818 * 15 14 13 30 30 H 1.09002 * 109.47169 * 54.99695 * 16 15 14 31 31 H 1.08997 * 109.47490 * 299.99908 * 17 16 15 32 32 H 1.09001 * 109.47012 * 60.00137 * 17 16 15 33 33 H 1.09002 * 109.47728 * 300.00329 * 18 17 16 34 34 H 1.09004 * 109.47369 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.47417 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47173 * 59.99817 * 19 18 17 37 37 H 1.09002 * 109.46755 * 299.99873 * 20 19 18 38 38 H 1.08996 * 109.46910 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47618 * 299.99900 * 21 16 15 40 40 H 1.09002 * 109.47269 * 59.99878 * 21 16 15 41 41 H 1.07995 * 120.00417 * 180.02562 * 22 13 12 42 42 H 1.08002 * 119.99302 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0090 -1.2005 0.0005 8 1 1.4690 -2.1358 0.0005 9 8 3.3571 -1.2004 0.0011 10 6 3.9736 -2.4057 0.1082 11 6 5.3562 -2.4704 0.2253 12 6 5.9825 -3.6948 0.3399 13 6 5.2309 -4.8635 0.3262 14 7 5.8655 -6.1040 0.4365 15 6 7.3232 -6.1721 0.5659 16 6 7.7582 -7.6354 0.6693 17 6 7.2083 -8.2407 1.9624 18 6 7.6427 -9.7040 2.0656 19 6 9.1706 -9.7830 2.0750 20 6 9.7205 -9.1777 0.7819 21 6 9.2860 -7.7138 0.6789 22 6 3.8483 -4.7986 0.2033 23 6 3.2220 -3.5736 0.0954 24 1 -0.4850 0.8400 0.0004 25 1 5.9406 -1.5622 0.2307 26 1 7.0570 -3.7449 0.4355 27 1 5.3407 -6.9198 0.4273 28 1 7.7873 -5.7158 -0.3084 29 1 7.6337 -5.6369 1.4631 30 1 7.3712 -8.1908 -0.1850 31 1 7.5952 -7.6854 2.8168 32 1 6.1197 -8.1848 1.9556 33 1 7.2554 -10.2592 1.2112 34 1 7.2506 -10.1354 2.9867 35 1 9.4802 -10.8255 2.1490 36 1 9.5579 -9.2279 2.9294 37 1 9.3332 -9.7328 -0.0725 38 1 10.8090 -9.2344 0.7884 39 1 9.6779 -7.2826 -0.2423 40 1 9.6730 -7.1584 1.5333 41 1 3.2639 -5.7067 0.1930 42 1 2.1473 -3.5232 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020126432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:03 Heat of formation + Delta-G solvation = -42.461778 kcal Electronic energy + Delta-G solvation = -20446.466501 eV Core-core repulsion = 17390.151452 eV Total energy + Delta-G solvation = -3056.315049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84569 -39.83751 -38.57001 -35.80313 -34.31779 -32.41851 -31.75542 -31.58544 -29.04221 -27.25279 -25.79525 -23.81048 -23.44388 -22.34995 -21.77042 -20.60571 -19.62096 -19.06843 -17.86868 -16.84787 -16.22927 -16.07276 -15.74351 -15.52962 -15.34074 -15.20949 -14.92352 -14.77585 -14.34020 -14.19560 -14.04049 -13.83465 -13.38219 -13.14217 -13.02565 -12.80978 -12.67384 -12.52767 -12.30078 -11.97386 -11.93270 -11.84321 -11.31886 -11.20038 -10.99849 -10.96606 -10.86137 -10.25090 -9.79546 -8.42888 -7.96437 -6.10608 0.56625 0.89199 1.33714 1.38961 1.55005 2.33340 2.66643 2.85133 3.16772 3.31867 3.73231 3.83770 3.88439 4.11586 4.16803 4.27139 4.37623 4.41965 4.56423 4.57786 4.60419 4.66792 4.67860 4.76699 4.84329 4.86546 4.96039 5.06385 5.19565 5.22573 5.24729 5.29312 5.31989 5.33043 5.42171 5.48210 5.50007 5.61720 5.63551 5.84828 5.86784 6.15390 6.62178 6.92836 7.02159 7.73386 8.69561 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.050560 B = 0.002866 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.662471 B = 9767.137146 C =10130.359927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.391 4.391 8 H 0.077 0.923 9 O -0.255 6.255 10 C 0.065 3.935 11 C -0.142 4.142 12 C -0.149 4.149 13 C 0.160 3.840 14 N -0.745 5.745 15 C 0.133 3.867 16 C -0.088 4.088 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.153 4.153 23 C -0.187 4.187 24 H 0.282 0.718 25 H 0.128 0.872 26 H 0.147 0.853 27 H 0.401 0.599 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.133 0.867 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.767 -19.273 2.803 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.095 0.905 9 O -0.164 6.164 10 C 0.016 3.984 11 C -0.161 4.161 12 C -0.171 4.171 13 C 0.059 3.941 14 N -0.379 5.379 15 C 0.008 3.992 16 C -0.106 4.106 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.175 4.175 23 C -0.206 4.206 24 H 0.091 0.909 25 H 0.146 0.854 26 H 0.164 0.836 27 H 0.236 0.764 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.151 0.849 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.895 -18.913 2.803 28.323 hybrid contribution -0.887 0.427 -0.046 0.985 sum 20.008 -18.486 2.757 27.380 Atomic orbital electron populations 1.69753 1.06863 1.29284 1.51500 1.25264 0.95895 1.02118 0.96082 0.85189 0.78742 0.77464 0.79136 1.19204 1.19468 1.18725 1.20679 0.78539 0.95860 1.51671 0.90502 1.83500 1.20699 1.27304 1.84861 1.19454 0.93092 0.85093 1.00711 1.20290 0.90502 0.99073 1.06272 1.20496 0.99893 0.89668 1.07045 1.17592 0.90831 0.86926 0.98771 1.44408 1.06253 1.03793 1.83444 1.21384 0.80006 0.97253 1.00518 1.21282 0.96715 0.93943 0.98693 1.21564 1.00195 0.96177 0.97126 1.21531 0.96221 0.96015 1.01875 1.21549 0.95269 1.00953 0.97995 1.21519 1.00702 0.95354 0.97882 1.21509 0.93580 0.97319 1.02457 1.20463 0.93244 0.96736 1.07068 1.21068 0.99862 0.92714 1.07003 0.90860 0.85391 0.83553 0.76374 0.92581 0.92846 0.90648 0.92351 0.92434 0.91942 0.91969 0.91583 0.92175 0.91976 0.91266 0.91328 0.91648 0.84947 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.96 21.61 0.30 -57.15 16 2 C 0.00 0.19 5.49 84.82 0.47 0.66 16 3 Si 0.97 47.06 28.62 68.60 1.96 49.02 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.39 -23.84 9.94 67.91 0.68 -23.17 16 8 H 0.08 4.91 5.43 -2.91 -0.02 4.89 16 9 O -0.25 -14.37 8.58 -23.13 -0.20 -14.57 16 10 C 0.06 3.16 6.65 22.59 0.15 3.31 16 11 C -0.14 -5.62 9.98 22.37 0.22 -5.40 16 12 C -0.15 -4.79 9.31 22.39 0.21 -4.58 16 13 C 0.16 5.00 6.66 38.22 0.25 5.25 16 14 N -0.74 -16.79 5.46 -339.25 -1.85 -18.64 16 15 C 0.13 2.35 4.30 86.38 0.37 2.72 16 16 C -0.09 -1.18 2.22 -10.80 -0.02 -1.21 16 17 C -0.11 -1.56 5.08 30.59 0.16 -1.41 16 18 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 19 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16 20 C -0.12 -1.19 5.93 30.61 0.18 -1.01 16 21 C -0.11 -1.26 5.21 30.61 0.16 -1.11 16 22 C -0.15 -5.49 9.89 22.39 0.22 -5.26 16 23 C -0.19 -8.52 9.16 22.37 0.20 -8.31 16 24 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 25 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 26 H 0.15 3.71 6.73 -2.91 -0.02 3.69 16 27 H 0.40 7.87 7.67 -92.70 -0.71 7.16 16 28 H 0.06 1.00 7.95 -2.39 -0.02 0.98 16 29 H 0.05 0.98 7.95 -2.39 -0.02 0.96 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.87 7.18 -2.39 -0.02 0.85 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.74 8.14 -2.38 -0.02 0.73 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.11 5.37 5.63 -2.91 -0.02 5.35 16 Total: -1.00 -67.53 333.98 4.11 -63.42 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.29 Total: 19.74 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 3.61 Total: -41.83 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.55 Total: -75.79 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.20 Total: -14.57 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.96 Total: 49.02 kcal Total: -67.53 4.11 -63.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.957 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds