Wall clock time and date at job start Mon Mar 30 2020 01:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47256 * 239.99594 * 3 2 1 5 5 H 1.48505 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47002 * 119.99611 * 3 2 1 7 7 C 1.38652 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99282 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00440 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99940 * 185.05652 * 9 7 2 11 11 C 1.38878 * 120.06980 * 354.46363 * 10 9 7 12 12 C 1.38094 * 119.93087 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.07021 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.93019 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.46978 * 90.00737 * 14 13 12 16 16 C 1.46904 * 110.99916 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47203 * 85.00262 * 16 15 14 18 18 C 1.52998 * 109.47258 * 179.97438 * 17 16 15 19 19 C 1.52992 * 109.47247 * 299.99738 * 18 17 16 20 20 C 1.53001 * 109.47164 * 59.99642 * 19 18 17 21 21 C 1.52998 * 109.47331 * 300.00307 * 20 19 18 22 22 C 1.38302 * 120.13758 * 0.25999 * 13 12 11 23 23 C 1.38102 * 120.06536 * 359.44760 * 22 13 12 24 24 H 0.97004 * 119.99922 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.03252 * 0.02562 * 11 10 9 26 26 H 1.08003 * 119.96371 * 180.02562 * 12 11 10 27 27 H 1.09002 * 109.47594 * 330.00163 * 14 13 12 28 28 H 1.09004 * 109.47479 * 210.00512 * 14 13 12 29 29 H 1.00900 * 111.00210 * 56.04312 * 15 14 13 30 30 H 1.09000 * 109.47267 * 324.99636 * 16 15 14 31 31 H 1.09007 * 109.46894 * 299.99799 * 17 16 15 32 32 H 1.09000 * 109.47520 * 59.99529 * 17 16 15 33 33 H 1.08998 * 109.46923 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.47089 * 60.00011 * 18 17 16 35 35 H 1.08999 * 109.47299 * 300.00144 * 19 18 17 36 36 H 1.08998 * 109.47533 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.47281 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47060 * 60.00348 * 20 19 18 39 39 H 1.08999 * 109.47089 * 299.99471 * 21 20 19 40 40 H 1.08998 * 109.46923 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.96817 * 179.69863 * 22 13 12 42 42 H 1.08004 * 120.03156 * 180.27939 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4571 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2039 13 6 3.5685 -5.8204 0.3245 14 6 4.3847 -7.0816 0.4423 15 7 4.6559 -7.3588 1.8591 16 6 5.4510 -8.5845 2.0130 17 6 6.9365 -8.2511 1.8617 18 6 7.7646 -9.5276 2.0225 19 6 7.5149 -10.1263 3.4081 20 6 6.0293 -10.4596 3.5595 21 6 5.2012 -9.1832 3.3987 22 6 2.1872 -5.8891 0.3313 23 6 1.4365 -4.7345 0.2290 24 1 -0.4850 0.8401 -0.0004 25 1 3.9526 -2.4845 0.0006 26 1 5.2811 -4.5469 0.1947 27 1 5.3274 -6.9555 -0.0903 28 1 3.8312 -7.9145 0.0086 29 1 3.7980 -7.4160 2.3871 30 1 5.1604 -9.3045 1.2480 31 1 7.1143 -7.8242 0.8746 32 1 7.2271 -7.5311 2.6267 33 1 8.8229 -9.2901 1.9143 34 1 7.4741 -10.2479 1.2578 35 1 7.8053 -9.4060 4.1729 36 1 8.1052 -11.0353 3.5230 37 1 5.8513 -10.8857 4.5469 38 1 5.7388 -11.1799 2.7948 39 1 5.4917 -8.4629 4.1635 40 1 4.1429 -9.4208 3.5061 41 1 1.6951 -6.8463 0.4207 42 1 0.3578 -4.7884 0.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034990837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:38 Heat of formation + Delta-G solvation = -27.954751 kcal Electronic energy + Delta-G solvation = -20433.583437 eV Core-core repulsion = 17377.897460 eV Total energy + Delta-G solvation = -3055.685978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.23651 -38.75371 -36.78432 -34.65301 -32.28793 -30.98159 -30.47072 -30.12171 -27.92889 -25.52088 -24.05691 -22.75492 -21.91928 -21.60311 -20.37906 -19.81259 -17.95262 -16.92347 -16.09544 -15.33572 -14.92857 -14.64434 -14.50340 -14.39817 -14.17247 -14.06576 -13.59635 -13.33776 -12.89962 -12.72373 -12.64307 -12.37263 -12.20712 -11.89709 -11.65032 -11.30902 -11.26464 -11.24617 -10.89332 -10.74208 -10.70008 -10.56268 -10.42540 -10.28745 -10.18876 -9.30723 -8.80975 -8.30269 -8.13515 -7.15462 -6.43103 -4.01890 2.25071 2.32488 3.14663 3.15850 3.18540 3.98593 4.15954 4.53618 4.56160 4.65619 4.88610 5.03467 5.10518 5.12731 5.25075 5.30000 5.33272 5.34388 5.42789 5.45064 5.48588 5.62061 5.77007 5.80390 5.83360 5.90014 5.91956 6.00172 6.02165 6.06973 6.14775 6.24144 6.30850 6.46390 6.73192 6.94231 7.06518 7.19652 7.25240 7.43601 7.46758 7.55420 7.86140 8.02166 9.02609 9.72998 10.74954 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.002946 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.435474 B = 9502.932757 C = 9880.924650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.155 3.845 11 C -0.235 4.235 12 C -0.049 4.049 13 C -0.184 4.184 14 C 0.119 3.881 15 N -0.682 5.682 16 C 0.087 3.913 17 C -0.107 4.107 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.069 4.069 23 C -0.194 4.194 24 H 0.270 0.730 25 H 0.126 0.874 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.341 0.659 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.112 -17.568 4.456 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.255 4.255 12 C -0.068 4.068 13 C -0.185 4.185 14 C -0.009 4.009 15 N -0.314 5.314 16 C -0.023 4.023 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.088 4.088 23 C -0.213 4.213 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.160 0.840 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.210 -16.922 4.451 21.337 hybrid contribution -0.201 0.204 -0.213 0.357 sum 12.009 -16.718 4.239 21.016 Atomic orbital electron populations 1.70033 1.05962 1.27747 1.46154 1.25285 0.95837 0.98822 0.96567 0.85786 0.78697 0.79779 0.79201 1.19517 1.20295 1.19470 1.21284 0.91788 0.80852 1.52872 0.89114 1.83975 1.34368 1.11465 1.78372 1.19394 0.90325 0.88020 0.92103 1.21166 0.93781 0.98940 1.11567 1.20567 0.98294 0.91564 0.96350 1.19130 0.93089 0.94059 1.12256 1.20650 0.97958 0.93984 0.88316 1.60586 1.24345 1.35725 1.10744 1.21521 0.94377 0.90272 0.96106 1.21524 0.93795 0.96999 1.02209 1.21544 0.99722 0.97493 0.97021 1.21540 0.96149 1.00465 0.97577 1.21496 0.95183 0.97295 1.01456 1.21716 0.99587 0.97249 0.97376 1.20475 0.93000 0.96554 0.98772 1.20164 0.99446 0.90345 1.11362 0.91996 0.85629 0.87543 0.91298 0.95607 0.83984 0.94340 0.92158 0.91289 0.92036 0.92328 0.91892 0.92319 0.92006 0.92202 0.91017 0.92205 0.87551 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 9 O -0.18 -5.16 9.76 0.05 0.00 -5.16 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.24 -5.21 9.17 -39.40 -0.36 -5.57 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 13 C -0.18 -3.17 5.40 -104.58 -0.56 -3.73 16 14 C 0.12 1.64 5.61 -4.98 -0.03 1.62 16 15 N -0.68 -8.71 6.30 -107.99 -0.68 -9.39 16 16 C 0.09 0.91 2.49 -67.71 -0.17 0.74 16 17 C -0.11 -1.08 5.42 -26.73 -0.15 -1.23 16 18 C -0.12 -0.99 5.92 -26.74 -0.16 -1.14 16 19 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 20 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 21 C -0.12 -1.11 5.19 -26.73 -0.14 -1.25 16 22 C -0.07 -1.24 9.69 -39.61 -0.38 -1.62 16 23 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 26 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 27 H 0.07 0.93 7.38 -51.93 -0.38 0.55 16 28 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 29 H 0.34 4.34 8.33 -39.29 -0.33 4.01 16 30 H 0.04 0.41 7.80 -51.93 -0.40 0.01 16 31 H 0.06 0.65 7.45 -51.92 -0.39 0.26 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -29.87 338.20 -9.65 -39.52 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.69 Total: 5.45 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -3.11 Total: -26.40 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.08 Total: -34.18 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.87 -9.65 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034990837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.562 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds