Wall clock time and date at job start Mon Mar 30 2020 01:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47256 * 239.99594 * 3 2 1 5 5 H 1.48505 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47002 * 119.99611 * 3 2 1 7 7 C 1.38652 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99282 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00440 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99940 * 185.05652 * 9 7 2 11 11 C 1.38878 * 120.06980 * 354.46363 * 10 9 7 12 12 C 1.38094 * 119.93087 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.07021 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.93019 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.46978 * 90.00737 * 14 13 12 16 16 C 1.46904 * 110.99916 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47203 * 85.00262 * 16 15 14 18 18 C 1.52998 * 109.47258 * 179.97438 * 17 16 15 19 19 C 1.52992 * 109.47247 * 299.99738 * 18 17 16 20 20 C 1.53001 * 109.47164 * 59.99642 * 19 18 17 21 21 C 1.52998 * 109.47331 * 300.00307 * 20 19 18 22 22 C 1.38302 * 120.13758 * 0.25999 * 13 12 11 23 23 C 1.38102 * 120.06536 * 359.44760 * 22 13 12 24 24 H 0.97004 * 119.99922 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.03252 * 0.02562 * 11 10 9 26 26 H 1.08003 * 119.96371 * 180.02562 * 12 11 10 27 27 H 1.09002 * 109.47594 * 330.00163 * 14 13 12 28 28 H 1.09004 * 109.47479 * 210.00512 * 14 13 12 29 29 H 1.00900 * 111.00210 * 56.04312 * 15 14 13 30 30 H 1.09000 * 109.47267 * 324.99636 * 16 15 14 31 31 H 1.09007 * 109.46894 * 299.99799 * 17 16 15 32 32 H 1.09000 * 109.47520 * 59.99529 * 17 16 15 33 33 H 1.08998 * 109.46923 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.47089 * 60.00011 * 18 17 16 35 35 H 1.08999 * 109.47299 * 300.00144 * 19 18 17 36 36 H 1.08998 * 109.47533 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.47281 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47060 * 60.00348 * 20 19 18 39 39 H 1.08999 * 109.47089 * 299.99471 * 21 20 19 40 40 H 1.08998 * 109.46923 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.96817 * 179.69863 * 22 13 12 42 42 H 1.08004 * 120.03156 * 180.27939 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4571 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2039 13 6 3.5685 -5.8204 0.3245 14 6 4.3847 -7.0816 0.4423 15 7 4.6559 -7.3588 1.8591 16 6 5.4510 -8.5845 2.0130 17 6 6.9365 -8.2511 1.8617 18 6 7.7646 -9.5276 2.0225 19 6 7.5149 -10.1263 3.4081 20 6 6.0293 -10.4596 3.5595 21 6 5.2012 -9.1832 3.3987 22 6 2.1872 -5.8891 0.3313 23 6 1.4365 -4.7345 0.2290 24 1 -0.4850 0.8401 -0.0004 25 1 3.9526 -2.4845 0.0006 26 1 5.2811 -4.5469 0.1947 27 1 5.3274 -6.9555 -0.0903 28 1 3.8312 -7.9145 0.0086 29 1 3.7980 -7.4160 2.3871 30 1 5.1604 -9.3045 1.2480 31 1 7.1143 -7.8242 0.8746 32 1 7.2271 -7.5311 2.6267 33 1 8.8229 -9.2901 1.9143 34 1 7.4741 -10.2479 1.2578 35 1 7.8053 -9.4060 4.1729 36 1 8.1052 -11.0353 3.5230 37 1 5.8513 -10.8857 4.5469 38 1 5.7388 -11.1799 2.7948 39 1 5.4917 -8.4629 4.1635 40 1 4.1429 -9.4208 3.5061 41 1 1.6951 -6.8463 0.4207 42 1 0.3578 -4.7884 0.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034990837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:37 Heat of formation + Delta-G solvation = -45.439202 kcal Electronic energy + Delta-G solvation = -20434.341620 eV Core-core repulsion = 17377.897460 eV Total energy + Delta-G solvation = -3056.444160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81000 -39.75290 -38.40612 -35.74401 -34.26740 -31.89294 -31.72164 -31.54661 -29.10062 -27.43264 -25.36431 -23.64886 -23.44031 -22.43581 -21.85752 -20.56805 -19.82661 -18.81481 -17.10909 -16.46757 -16.34381 -16.04758 -15.82248 -15.61815 -15.45605 -15.12191 -14.94151 -14.73760 -14.46774 -14.22408 -13.70718 -13.49905 -13.20074 -13.08489 -12.95631 -12.85801 -12.41380 -12.38719 -12.15187 -12.07297 -12.02472 -11.93924 -11.40558 -11.17477 -11.11021 -10.92182 -10.77140 -9.76995 -9.29680 -8.89568 -8.47000 -6.15203 0.61041 0.68718 1.34834 1.45633 1.51163 2.18220 2.78682 3.10439 3.43313 3.52809 3.82642 3.88346 4.06537 4.09683 4.18379 4.21789 4.34819 4.40510 4.51249 4.56766 4.60939 4.65819 4.67084 4.72871 4.75484 4.83735 5.00725 5.09688 5.15834 5.16413 5.20443 5.30694 5.32342 5.32878 5.38443 5.43581 5.56639 5.60144 5.72564 5.83362 6.03219 6.18071 6.27917 6.53661 6.97700 7.78638 8.76116 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.002946 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.435474 B = 9502.932757 C = 9880.924650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.051 4.051 13 C -0.157 4.157 14 C 0.124 3.876 15 N -0.693 5.693 16 C 0.089 3.911 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.060 4.060 23 C -0.205 4.205 24 H 0.273 0.727 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.342 0.658 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.146 0.854 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.467 -19.967 4.820 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.139 6.139 10 C 0.063 3.937 11 C -0.263 4.263 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.004 4.004 15 N -0.324 5.324 16 C -0.020 4.020 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.078 4.078 23 C -0.224 4.224 24 H 0.082 0.918 25 H 0.134 0.866 26 H 0.151 0.849 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.161 0.839 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.164 0.836 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.602 -19.384 4.821 24.743 hybrid contribution -0.805 0.579 -0.288 1.033 sum 13.797 -18.806 4.532 23.760 Atomic orbital electron populations 1.70180 1.08013 1.28864 1.48903 1.26590 0.96860 1.02727 0.95844 0.84658 0.77409 0.74284 0.79927 1.18135 1.19523 1.18223 1.21777 0.92487 0.81515 1.53298 0.88242 1.83937 1.35938 1.12590 1.81473 1.19946 0.91576 0.87999 0.94166 1.21253 0.93132 0.99994 1.11968 1.20887 0.99554 0.91002 0.95488 1.19632 0.93264 0.95090 1.07850 1.20623 0.97956 0.92416 0.89432 1.60536 1.24624 1.37448 1.09825 1.21562 0.94049 0.89346 0.97034 1.21514 0.93917 0.97686 1.01350 1.21524 0.99717 0.96631 0.97588 1.21546 0.96289 1.00881 0.96992 1.21489 0.94927 0.96577 1.02186 1.21691 1.00148 0.97643 0.96199 1.20882 0.93320 0.96845 0.96765 1.20441 0.99906 0.90566 1.11468 0.91823 0.86561 0.84895 0.90408 0.93716 0.83896 0.93800 0.92782 0.92577 0.91479 0.91797 0.92358 0.91057 0.91132 0.91687 0.91985 0.91814 0.83591 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.32 13.67 21.61 0.30 -57.03 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 43.49 29.55 68.60 2.03 45.52 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -14.29 9.76 -22.74 -0.22 -14.52 16 10 C 0.11 5.78 6.65 22.58 0.15 5.93 16 11 C -0.24 -10.97 9.17 22.39 0.21 -10.76 16 12 C -0.05 -1.82 9.69 22.25 0.22 -1.61 16 13 C -0.16 -4.95 5.40 -19.84 -0.11 -5.06 16 14 C 0.12 2.92 5.61 85.56 0.48 3.40 16 15 N -0.69 -15.41 6.30 -495.58 -3.12 -18.53 16 16 C 0.09 1.59 2.49 44.91 0.11 1.71 16 17 C -0.11 -1.88 5.42 30.59 0.17 -1.71 16 18 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 19 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 20 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 21 C -0.12 -1.85 5.19 30.59 0.16 -1.69 16 22 C -0.06 -1.99 9.69 22.25 0.22 -1.78 16 23 C -0.20 -8.81 9.99 22.39 0.22 -8.59 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.12 5.33 5.64 -2.91 -0.02 5.32 16 26 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.08 1.77 7.38 -2.39 -0.02 1.75 16 28 H 0.04 0.94 8.00 -2.38 -0.02 0.92 16 29 H 0.34 7.58 8.33 -89.69 -0.75 6.83 16 30 H 0.04 0.77 7.80 -2.39 -0.02 0.75 16 31 H 0.05 1.01 7.45 -2.38 -0.02 0.99 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 41 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -68.84 338.20 2.71 -66.14 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.25 Total: 27.37 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 3.47 Total: -48.96 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.83 Total: -75.56 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.22 Total: -14.52 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.84 2.71 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034990837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.699 kcal (2) G-P(sol) polarization free energy of solvation -68.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds