Wall clock time and date at job start Mon Mar 30 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.52993 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47533 * 60.00214 * 4 3 2 6 6 N 1.46497 * 109.46996 * 59.99826 * 5 4 3 7 7 C 1.39668 * 119.99969 * 155.00355 * 6 5 4 8 8 C 1.39011 * 120.04085 * 359.97438 * 7 6 5 9 9 C 1.38149 * 120.06218 * 180.02562 * 8 7 6 10 10 C 1.38176 * 120.14500 * 359.72293 * 9 8 7 11 11 C 1.38918 * 120.07431 * 0.55384 * 10 9 8 12 12 O 1.35753 * 120.02696 * 179.72007 * 11 10 9 13 13 C 1.34835 * 116.99726 * 174.18640 * 12 11 10 14 14 H 1.08000 * 119.99927 * 5.06436 * 13 12 11 15 15 C 1.38651 * 119.99920 * 185.05751 * 13 12 11 16 16 N 1.31558 * 119.99943 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99837 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47430 * 60.00153 * 17 15 13 19 19 H 1.48506 * 109.46963 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46946 * 299.99620 * 17 15 13 21 21 C 1.38757 * 119.94038 * 359.44745 * 11 10 9 22 22 C 1.53002 * 109.46668 * 300.00383 * 5 4 3 23 23 C 1.53000 * 109.46913 * 240.00472 * 2 1 3 24 24 H 1.09002 * 109.46983 * 60.00469 * 1 2 3 25 25 H 1.09006 * 109.46674 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46872 * 299.99904 * 1 2 3 27 27 H 1.08992 * 109.47195 * 120.00305 * 2 1 3 28 28 H 1.09000 * 109.47024 * 59.99983 * 3 2 1 29 29 H 1.09002 * 109.47332 * 300.00198 * 3 2 1 30 30 H 1.09002 * 109.47180 * 299.99818 * 4 3 2 31 31 H 1.09003 * 109.47652 * 180.02562 * 4 3 2 32 32 H 1.08992 * 109.47501 * 180.02562 * 5 4 3 33 33 H 0.97005 * 120.00018 * 335.00837 * 6 5 4 34 34 H 1.07992 * 119.96556 * 0.02562 * 8 7 6 35 35 H 1.08004 * 119.92685 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.96177 * 180.29756 * 10 9 8 37 37 H 0.97001 * 120.00127 * 180.02562 * 16 15 13 38 38 H 1.08001 * 120.07612 * 180.29913 * 21 11 10 39 39 H 1.09000 * 109.47088 * 179.97438 * 22 5 4 40 40 H 1.09002 * 109.47210 * 299.99557 * 22 5 4 41 41 H 1.09006 * 109.47386 * 299.99484 * 23 2 1 42 42 H 1.08992 * 109.47779 * 60.00196 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0796 0.7215 -1.2502 6 7 3.5907 1.4123 -2.4460 7 6 4.2916 1.3061 -3.6494 8 6 5.4534 0.5455 -3.7133 9 6 6.1473 0.4405 -4.9033 10 6 5.6862 1.0860 -6.0347 11 6 4.5290 1.8522 -5.9761 12 8 4.0799 2.4906 -7.0868 13 6 2.8897 3.1172 -6.9936 14 1 2.3782 3.1662 -6.0437 15 6 2.3226 3.6989 -8.1172 16 7 2.9456 3.6389 -9.2744 17 14 0.6740 4.5677 -7.9879 18 1 0.7794 5.6878 -7.0187 19 1 0.2890 5.0997 -9.3199 20 1 -0.3573 3.6058 -7.5227 21 6 3.8294 1.9600 -4.7826 22 6 3.5695 -0.7210 -1.2502 23 6 2.0400 -0.7212 -1.2493 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9286 0.8891 31 1 3.9333 2.4702 -0.0002 32 1 5.1695 0.7212 -1.2504 33 1 2.7802 1.9436 -2.4020 34 1 5.8139 0.0363 -2.8318 35 1 7.0495 -0.1513 -4.9505 36 1 6.2284 0.9980 -6.9645 37 1 2.5491 4.0461 -10.0604 38 1 2.9268 2.5512 -4.7358 39 1 3.9322 -1.2345 -2.1406 40 1 3.9332 -1.2350 -0.3605 41 1 1.6767 -1.7489 -1.2494 42 1 1.6768 -0.2073 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:37 Heat of formation + Delta-G solvation = -41.050525 kcal Electronic energy + Delta-G solvation = -21347.535843 eV Core-core repulsion = 18291.281990 eV Total energy + Delta-G solvation = -3056.253853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99918 -40.07193 -38.17364 -35.53554 -34.19977 -32.61899 -31.71379 -30.49338 -29.23831 -27.22173 -26.91280 -23.67735 -23.24593 -22.89613 -21.80635 -20.29243 -19.47989 -18.92716 -17.39713 -16.84248 -16.33462 -16.10340 -15.87402 -15.62586 -15.42644 -15.11390 -14.87326 -14.46004 -14.39507 -14.18066 -13.65205 -13.48299 -13.34516 -13.08731 -12.88514 -12.68565 -12.45877 -12.38882 -12.29142 -12.16792 -12.01249 -11.95861 -11.36390 -11.28415 -11.18701 -10.90927 -10.81093 -10.50910 -9.08607 -8.44866 -8.16971 -6.13174 0.78865 0.95265 1.32817 1.44792 1.49426 2.18323 2.61596 2.90205 3.28616 3.61065 3.78577 3.84373 3.85903 4.21495 4.22575 4.30207 4.38993 4.51916 4.53866 4.62414 4.64668 4.69049 4.72210 4.80965 4.89220 4.95995 5.01489 5.12873 5.15265 5.17130 5.17758 5.21461 5.27260 5.36642 5.39352 5.48357 5.53833 5.61703 5.77491 5.83145 6.06644 6.14792 6.67759 6.91482 7.00489 7.84346 8.78657 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.004945 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.803718 B = 5660.769433 C = 6918.988587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.115 4.115 4 C -0.119 4.119 5 C 0.150 3.850 6 N -0.734 5.734 7 C 0.261 3.739 8 C -0.264 4.264 9 C -0.027 4.027 10 C -0.265 4.265 11 C 0.153 3.847 12 O -0.234 6.234 13 C -0.410 4.410 14 H 0.097 0.903 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.259 1.259 21 C -0.319 4.319 22 C -0.131 4.131 23 C -0.111 4.111 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.394 0.606 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.272 0.728 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -7.388 22.509 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.153 4.153 4 C -0.157 4.157 5 C 0.046 3.954 6 N -0.364 5.364 7 C 0.156 3.844 8 C -0.286 4.286 9 C -0.045 4.045 10 C -0.286 4.286 11 C 0.102 3.898 12 O -0.140 6.140 13 C -0.487 4.487 14 H 0.114 0.886 15 C -0.221 4.221 16 N -0.561 5.561 17 Si 0.836 3.164 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.184 1.184 21 C -0.343 4.343 22 C -0.170 4.170 23 C -0.149 4.149 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.230 0.770 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.636 -7.402 22.249 23.504 hybrid contribution -1.019 0.757 -0.835 1.519 sum -2.655 -6.645 21.414 22.578 Atomic orbital electron populations 1.21837 0.95357 1.01791 1.01580 1.21105 0.95353 0.95761 0.98132 1.21586 0.95303 0.96623 1.01767 1.21772 0.95993 1.00905 0.97038 1.21033 0.98667 0.91614 0.84106 1.44866 1.29019 1.55893 1.06642 1.17560 0.90622 0.90952 0.85237 1.20561 0.98612 1.09974 0.99465 1.20825 0.98180 0.94948 0.90567 1.20242 0.99692 1.08014 1.00650 1.19638 0.93428 0.90154 0.86622 1.83945 1.36385 1.60948 1.32723 1.21725 0.95467 1.33892 0.97582 0.88550 1.26565 1.03744 0.98238 0.93521 1.70185 1.40741 1.44577 1.00551 0.84685 0.74978 0.78312 0.78439 1.18197 1.19420 1.18370 1.20496 1.06259 1.14263 0.93328 1.21977 0.96069 0.96585 1.02321 1.21495 0.95579 1.00099 0.97721 0.93981 0.92490 0.91792 0.89857 0.90577 0.93529 0.88539 0.91680 0.90146 0.77007 0.84017 0.83169 0.87760 0.91903 0.87254 0.93101 0.89304 0.92105 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.19 71.98 0.66 -1.61 16 2 C -0.09 -1.30 2.72 -10.79 -0.03 -1.33 16 3 C -0.12 -1.80 5.03 30.59 0.15 -1.65 16 4 C -0.12 -1.83 5.61 30.59 0.17 -1.65 16 5 C 0.15 3.01 2.48 44.99 0.11 3.13 16 6 N -0.73 -20.39 4.40 -319.02 -1.40 -21.79 16 7 C 0.26 9.50 6.63 38.20 0.25 9.75 16 8 C -0.26 -8.67 8.85 22.43 0.20 -8.48 16 9 C -0.03 -0.94 10.03 22.23 0.22 -0.72 16 10 C -0.26 -12.08 9.99 22.42 0.22 -11.86 16 11 C 0.15 8.07 6.64 22.56 0.15 8.22 16 12 O -0.23 -14.75 9.76 -22.82 -0.22 -14.97 16 13 C -0.41 -24.89 9.49 67.92 0.64 -24.25 16 14 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 15 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 16 N -0.92 -58.23 13.67 21.61 0.30 -57.93 16 17 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 C -0.32 -14.76 9.01 22.52 0.20 -14.56 16 22 C -0.13 -2.45 5.54 30.58 0.17 -2.28 16 23 C -0.11 -2.16 5.04 30.58 0.15 -2.01 16 24 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.88 6.50 -2.39 -0.02 0.87 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.60 6.48 -2.39 -0.02 1.58 16 33 H 0.39 10.87 6.88 -92.70 -0.64 10.24 16 34 H 0.14 3.66 6.11 -2.91 -0.02 3.64 16 35 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.11 5.21 5.64 -2.91 -0.02 5.19 16 39 H 0.05 1.15 7.71 -2.39 -0.02 1.14 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.04 1.00 7.60 -2.39 -0.02 0.98 16 Total: -1.00 -72.16 330.28 4.82 -67.33 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.37 Total: 31.35 kcal Atomic # 6 Polarization: -53.97 SS G_CDS: 3.76 Total: -50.22 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -1.11 Total: -79.72 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.22 Total: -14.97 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.16 4.82 -67.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.280 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds