Wall clock time and date at job start Mon Mar 30 2020 01:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 119.99955 * 2 1 4 4 H 1.48500 * 109.46845 * 269.99781 * 3 2 1 5 5 H 1.48492 * 109.47188 * 29.99767 * 3 2 1 6 6 H 1.48498 * 109.47005 * 150.00111 * 3 2 1 7 7 C 1.38651 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99718 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00641 * 359.97438 * 7 2 1 10 10 C 1.35742 * 117.00677 * 185.05704 * 9 7 2 11 11 C 1.38957 * 120.03502 * 174.48373 * 10 9 7 12 12 C 1.38128 * 120.07988 * 179.97438 * 11 10 9 13 13 C 1.38191 * 120.14440 * 359.74743 * 12 11 10 14 14 C 1.38964 * 120.06172 * 0.50700 * 13 12 11 15 15 N 1.39667 * 120.04396 * 179.76812 * 14 13 12 16 16 C 1.46504 * 119.99756 * 359.72574 * 15 14 13 17 17 C 1.52995 * 109.47291 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.47125 * 64.99585 * 17 16 15 19 19 C 1.53004 * 109.47340 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47169 * 300.00617 * 19 18 17 21 21 C 1.53001 * 109.47004 * 59.99682 * 20 19 18 22 22 C 1.52995 * 109.47536 * 184.99816 * 17 16 15 23 23 C 1.38724 * 120.03281 * 354.46546 * 10 9 7 24 24 H 0.97003 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.95952 * 359.97438 * 11 10 9 26 26 H 1.08006 * 119.92785 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.97146 * 180.27088 * 13 12 11 28 28 H 0.96998 * 120.00586 * 179.72551 * 15 14 13 29 29 H 1.08995 * 109.47308 * 59.99872 * 16 15 14 30 30 H 1.09000 * 109.47085 * 299.99790 * 16 15 14 31 31 H 1.09003 * 109.47222 * 304.99944 * 17 16 15 32 32 H 1.08996 * 109.47350 * 300.00377 * 18 17 16 33 33 H 1.09003 * 109.47231 * 60.00368 * 18 17 16 34 34 H 1.08996 * 109.47379 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.46656 * 60.00018 * 19 18 17 36 36 H 1.09003 * 109.46839 * 299.99844 * 20 19 18 37 37 H 1.08999 * 109.46614 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.46616 * 180.02562 * 21 20 19 39 39 H 1.08993 * 109.47195 * 60.00383 * 21 20 19 40 40 H 1.09003 * 109.46969 * 300.00283 * 22 17 16 41 41 H 1.09008 * 109.47093 * 59.99771 * 22 17 16 42 42 H 1.08009 * 120.06517 * 0.04269 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6526 0.6999 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0699 -3.5045 0.1087 11 6 1.4354 -4.7346 0.2316 12 6 2.1827 -5.8913 0.3401 13 6 3.5631 -5.8299 0.3215 14 6 4.2038 -4.6024 0.2042 15 7 5.5991 -4.5405 0.1903 16 6 6.3880 -5.7695 0.3056 17 6 7.8781 -5.4250 0.2631 18 6 8.2442 -4.5919 1.4931 19 6 9.7345 -4.2479 1.4509 20 6 10.5560 -5.5386 1.4460 21 6 10.1898 -6.3715 0.2159 22 6 8.7001 -6.7153 0.2579 23 6 3.4555 -3.4387 0.0951 24 1 -0.4851 0.8400 -0.0004 25 1 0.3567 -4.7864 0.2424 26 1 1.6869 -6.8460 0.4360 27 1 4.1445 -6.7365 0.4022 28 1 6.0457 -3.6837 0.1044 29 1 6.1458 -6.4358 -0.5222 30 1 6.1557 -6.2632 1.2492 31 1 8.0932 -4.8535 -0.6399 32 1 7.6587 -3.6726 1.4968 33 1 8.0292 -5.1633 2.3961 34 1 9.9954 -3.6548 2.3274 35 1 9.9500 -3.6766 0.5479 36 1 10.3404 -6.1099 2.3490 37 1 11.6176 -5.2934 1.4155 38 1 10.7747 -7.2913 0.2127 39 1 10.4054 -5.8003 -0.6869 40 1 8.4849 -7.2868 1.1609 41 1 8.4392 -7.3088 -0.6184 42 1 3.9510 -2.4836 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:42 Heat of formation + Delta-G solvation = -48.176951 kcal Electronic energy + Delta-G solvation = -20708.144216 eV Core-core repulsion = 17651.581338 eV Total energy + Delta-G solvation = -3056.562878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81031 -39.83261 -38.45771 -36.00746 -34.22182 -32.68941 -31.62838 -30.64168 -29.46528 -27.24366 -26.22315 -23.60766 -23.35260 -22.54476 -21.68859 -20.63953 -19.70715 -18.98091 -17.30392 -16.74059 -16.29545 -16.22606 -15.81837 -15.77703 -15.44534 -15.25083 -14.94026 -14.79824 -14.43870 -14.12458 -14.09253 -13.49631 -13.21346 -13.04887 -12.93635 -12.75714 -12.49683 -12.44295 -12.18528 -12.06586 -11.99429 -11.85740 -11.34161 -11.30279 -11.00587 -10.98773 -10.84954 -10.58475 -9.09627 -8.45265 -8.21602 -6.13660 0.77014 0.93010 1.33807 1.44402 1.51708 2.18573 2.58102 2.89707 3.27513 3.59937 3.69540 3.80582 3.85802 4.20636 4.25035 4.34445 4.38509 4.42602 4.54219 4.57999 4.62585 4.65000 4.73761 4.76247 4.81595 4.84211 5.01131 5.09370 5.14147 5.16660 5.18435 5.26809 5.29139 5.31027 5.40006 5.46005 5.48120 5.59993 5.75969 5.81154 6.04957 6.12499 6.61970 6.87390 7.00066 7.83643 8.78509 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.003919 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.303140 B = 7142.432783 C = 8492.447256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.411 4.411 8 H 0.098 0.902 9 O -0.233 6.233 10 C 0.153 3.847 11 C -0.263 4.263 12 C -0.026 4.026 13 C -0.265 4.265 14 C 0.255 3.745 15 N -0.744 5.744 16 C 0.133 3.867 17 C -0.089 4.089 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.318 4.318 24 H 0.272 0.728 25 H 0.106 0.894 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.397 0.603 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.750 -12.667 1.771 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.487 4.487 8 H 0.116 0.884 9 O -0.139 6.139 10 C 0.102 3.898 11 C -0.284 4.284 12 C -0.044 4.044 13 C -0.288 4.288 14 C 0.151 3.849 15 N -0.374 5.374 16 C 0.009 3.991 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.342 4.342 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.170 0.830 27 H 0.159 0.841 28 H 0.232 0.768 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 21.447 -12.698 1.774 24.987 hybrid contribution -0.114 1.428 -0.067 1.434 sum 21.333 -11.270 1.707 24.187 Atomic orbital electron populations 1.70190 1.08010 1.28716 1.49178 1.26587 0.96857 1.02695 0.95975 0.84595 0.77756 0.74630 0.79249 1.18757 1.19462 1.17814 1.21786 0.92388 0.81554 1.53012 0.88441 1.83941 1.35932 1.12658 1.81361 1.19635 0.90840 0.87715 0.91659 1.20266 0.99610 0.90765 1.17736 1.20831 0.93349 0.96848 0.93412 1.20551 0.94518 0.95888 1.17832 1.17575 0.84101 0.92784 0.90469 1.44722 1.01426 1.09589 1.81641 1.21460 0.90269 0.86328 1.01049 1.21306 0.92547 0.98022 0.98926 1.21572 0.96473 0.99367 0.97775 1.21534 0.94429 0.97892 1.01834 1.21544 0.99562 0.95980 0.98535 1.21506 0.95553 1.00209 0.98187 1.21481 0.94764 0.95658 1.02724 1.20515 0.93134 0.98192 1.22395 0.91878 0.87551 0.83002 0.84127 0.76807 0.92042 0.92267 0.91009 0.93171 0.92033 0.92000 0.92183 0.91925 0.91467 0.90903 0.92144 0.91332 0.91110 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.10 13.67 21.61 0.30 -57.80 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 3 Si 1.02 43.99 29.55 68.60 2.03 46.02 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.41 -24.85 9.49 67.92 0.64 -24.20 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -14.63 9.76 -22.62 -0.22 -14.85 16 10 C 0.15 8.05 6.64 22.56 0.15 8.20 16 11 C -0.26 -11.94 9.99 22.42 0.22 -11.72 16 12 C -0.03 -0.92 10.03 22.23 0.22 -0.69 16 13 C -0.27 -8.85 9.31 22.43 0.21 -8.64 16 14 C 0.26 9.41 6.65 38.20 0.25 9.66 16 15 N -0.74 -20.99 5.46 -339.48 -1.85 -22.84 16 16 C 0.13 2.74 4.30 86.38 0.37 3.11 16 17 C -0.09 -1.47 2.23 -10.80 -0.02 -1.49 16 18 C -0.11 -1.97 5.08 30.60 0.16 -1.82 16 19 C -0.12 -1.75 5.92 30.60 0.18 -1.57 16 20 C -0.12 -1.45 5.92 30.60 0.18 -1.27 16 21 C -0.12 -1.36 5.92 30.58 0.18 -1.18 16 22 C -0.11 -1.39 5.20 30.57 0.16 -1.24 16 23 C -0.32 -14.72 9.01 22.52 0.20 -14.52 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 26 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 27 H 0.14 3.69 6.72 -2.91 -0.02 3.67 16 28 H 0.40 10.80 7.66 -92.71 -0.71 10.09 16 29 H 0.06 1.23 7.94 -2.39 -0.02 1.21 16 30 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.01 7.18 -2.39 -0.02 0.99 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.11 5.29 5.64 -2.91 -0.02 5.28 16 Total: -1.00 -71.75 335.09 4.12 -67.63 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.29 Total: 30.14 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 3.58 Total: -48.29 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.56 Total: -80.64 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.85 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.75 4.12 -67.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.451 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds