Wall clock time and date at job start Mon Mar 30 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38385 * 119.93033 * 2 1 4 4 C 1.38336 * 120.29572 * 180.27904 * 3 2 1 5 5 C 1.37979 * 120.14525 * 359.48385 * 4 3 2 6 6 C 1.39562 * 119.85196 * 0.25845 * 5 4 3 7 7 C 1.47837 * 120.14634 * 179.97438 * 6 5 4 8 8 O 1.21557 * 120.00268 * 124.75220 * 7 6 5 9 9 N 1.34782 * 120.00196 * 304.75394 * 7 6 5 10 10 C 1.46497 * 119.99864 * 183.77930 * 9 7 6 11 11 C 1.50704 * 109.47225 * 90.00003 * 10 9 7 12 12 H 1.07999 * 119.99842 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00071 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00348 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99966 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.47183 * 89.99883 * 15 13 11 17 17 H 1.48499 * 109.47362 * 209.99796 * 15 13 11 18 18 H 1.48500 * 109.47295 * 329.99880 * 15 13 11 19 19 C 1.46498 * 119.99489 * 3.77434 * 9 7 6 20 20 C 1.53002 * 109.46658 * 114.17464 * 19 9 7 21 21 C 1.53002 * 109.46882 * 234.16825 * 19 9 7 22 22 C 1.37938 * 119.92795 * 179.76446 * 2 1 3 23 23 C 1.50699 * 120.07488 * 0.02562 * 22 2 1 24 24 H 1.08992 * 109.47242 * 270.23122 * 1 2 3 25 25 H 1.08998 * 109.47024 * 30.23418 * 1 2 3 26 26 H 1.08999 * 109.46939 * 150.22980 * 1 2 3 27 27 H 1.07999 * 119.85120 * 0.03917 * 3 2 1 28 28 H 1.07997 * 119.92999 * 179.76547 * 4 3 2 29 29 H 1.07999 * 120.07880 * 180.27764 * 5 4 3 30 30 H 1.09003 * 109.46937 * 209.99377 * 10 9 7 31 31 H 1.08997 * 109.47697 * 329.99298 * 10 9 7 32 32 H 0.96994 * 120.00032 * 179.97438 * 14 13 11 33 33 H 1.08991 * 109.47592 * 354.17176 * 19 9 7 34 34 H 1.09000 * 109.46978 * 60.00042 * 20 19 9 35 35 H 1.09007 * 109.47010 * 179.97438 * 20 19 9 36 36 H 1.08997 * 109.47478 * 299.99520 * 20 19 9 37 37 H 1.09003 * 109.47015 * 60.01046 * 21 19 9 38 38 H 1.08997 * 109.46927 * 180.02562 * 21 19 9 39 39 H 1.09000 * 109.47400 * 300.00396 * 21 19 9 40 40 H 1.09006 * 109.46822 * 275.70311 * 23 22 2 41 41 H 1.09003 * 109.47237 * 35.69644 * 23 22 2 42 42 H 1.08996 * 109.47227 * 155.70157 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0058 5 6 4.2813 0.0194 -0.0009 6 6 3.5912 -1.1936 0.0045 7 6 4.3353 -2.4711 0.0092 8 8 4.1232 -3.2948 0.8776 9 7 5.2488 -2.7225 -0.9494 10 6 5.9261 -4.0207 -0.9933 11 6 5.1335 -4.9721 -1.8523 12 1 4.2167 -4.6427 -2.3185 13 6 5.5788 -6.2629 -2.0430 14 7 4.8869 -7.0934 -2.7922 15 14 7.1649 -6.8324 -1.2372 16 1 6.8641 -7.3984 0.1024 17 1 7.8036 -7.8732 -2.0822 18 1 8.0880 -5.6784 -1.0911 19 6 5.5642 -1.6975 -1.9474 20 6 7.0121 -1.2376 -1.7659 21 6 5.3863 -2.2803 -3.3508 22 6 2.1952 -1.1954 0.0049 23 6 1.4417 -2.5006 0.0097 24 1 -0.3633 0.0041 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6539 2.1325 0.0006 28 1 4.1136 2.1475 -0.0096 29 1 5.3613 0.0276 -0.0009 30 1 6.9237 -3.8960 -1.4146 31 1 6.0059 -4.4233 0.0164 32 1 5.2004 -8.0014 -2.9266 33 1 4.8942 -0.8474 -1.8194 34 1 7.6821 -2.0878 -1.8940 35 1 7.2470 -0.4752 -2.5088 36 1 7.1389 -0.8224 -0.7662 37 1 4.3548 -2.6079 -3.4801 38 1 5.6214 -1.5178 -4.0934 39 1 6.0564 -3.1305 -3.4788 40 1 1.1713 -2.7602 1.0333 41 1 0.5375 -2.4003 -0.5907 42 1 2.0714 -3.2851 -0.4099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:11 Heat of formation + Delta-G solvation = -16.842799 kcal Electronic energy + Delta-G solvation = -22168.543446 eV Core-core repulsion = 19113.339318 eV Total energy + Delta-G solvation = -3055.204127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23139 -38.28902 -36.06541 -33.38445 -32.75422 -31.95183 -30.99887 -28.49087 -27.17422 -26.76438 -26.25233 -23.60997 -22.05372 -20.98594 -20.66366 -18.30000 -16.89058 -16.78656 -15.91895 -15.81110 -15.20413 -14.30959 -14.22621 -14.06036 -13.76181 -13.43661 -13.12144 -12.89884 -12.70675 -12.54287 -12.49143 -12.34170 -11.96277 -11.74546 -11.72465 -11.61952 -11.43705 -11.18727 -10.91644 -10.86844 -10.75457 -10.51666 -10.28423 -10.10283 -9.46102 -9.08221 -8.58181 -8.53719 -8.45697 -7.70005 -6.06871 -4.04412 1.22627 1.43293 3.29713 3.30673 3.35684 3.38228 3.68441 3.98932 4.41011 4.81567 4.86836 4.93510 5.05270 5.22640 5.25256 5.27698 5.39101 5.51216 5.55243 5.60826 5.68746 5.72530 5.89082 5.97204 5.98987 6.04998 6.09167 6.11354 6.27824 6.32200 6.45317 6.48495 6.53248 6.58019 6.72177 6.82421 6.96872 7.02669 7.05176 7.38438 7.63062 8.26950 8.49024 8.92903 8.99404 9.53813 11.06217 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.005922 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.012682 B = 4726.834150 C = 5295.399213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.108 4.108 4 C -0.130 4.130 5 C -0.097 4.097 6 C -0.110 4.110 7 C 0.552 3.448 8 O -0.534 6.534 9 N -0.579 5.579 10 C 0.215 3.785 11 C -0.521 4.521 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.872 3.128 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.124 3.876 20 C -0.163 4.163 21 C -0.153 4.153 22 C -0.037 4.037 23 C -0.121 4.121 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 17.600 2.465 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.126 4.126 4 C -0.148 4.148 5 C -0.116 4.116 6 C -0.113 4.113 7 C 0.339 3.661 8 O -0.412 6.412 9 N -0.310 5.310 10 C 0.094 3.906 11 C -0.560 4.560 12 H 0.095 0.905 13 C -0.129 4.129 14 N -0.536 5.536 15 Si 0.699 3.301 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.020 3.980 20 C -0.221 4.221 21 C -0.210 4.210 22 C -0.038 4.038 23 C -0.177 4.177 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.026 16.935 2.836 17.435 hybrid contribution 0.925 -0.395 0.276 1.043 sum -2.101 16.540 3.112 16.961 Atomic orbital electron populations 1.20829 0.91096 1.02883 1.02313 1.19686 0.96109 0.92323 1.01403 1.21066 0.94228 0.97211 1.00098 1.20970 0.94194 0.97643 1.02034 1.21285 0.99986 0.91449 0.98879 1.20063 0.93776 0.94106 1.03344 1.18179 0.79824 0.85848 0.82249 1.90756 1.65654 1.47601 1.37172 1.47966 1.39719 1.15931 1.27367 1.19651 0.92757 0.80033 0.98136 1.21318 1.09838 0.95352 1.29459 0.90523 1.24830 0.96920 0.96354 0.94839 1.69890 1.38861 1.06086 1.38784 0.86914 0.84212 0.78996 0.79960 1.19968 1.21150 1.19121 1.21249 0.96135 0.90961 0.89687 1.22209 0.97155 1.01586 1.01174 1.22081 1.03749 1.01158 0.94054 1.19787 0.92002 0.95508 0.96517 1.20925 0.99910 0.94224 1.02686 0.91213 0.91746 0.90950 0.86119 0.85867 0.85574 0.95077 0.94594 0.92642 0.89539 0.91714 0.91891 0.92964 0.92207 0.93297 0.90371 0.90616 0.91439 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.60 36.00 0.35 -0.81 16 2 C -0.10 -1.24 5.87 -104.68 -0.61 -1.86 16 3 C -0.11 -1.24 9.69 -39.49 -0.38 -1.62 16 4 C -0.13 -1.53 10.03 -39.64 -0.40 -1.92 16 5 C -0.10 -1.38 7.43 -39.18 -0.29 -1.67 16 6 C -0.11 -1.92 4.82 -104.97 -0.51 -2.43 16 7 C 0.55 11.88 6.04 -12.33 -0.07 11.81 16 8 O -0.53 -13.50 15.58 5.32 0.08 -13.42 16 9 N -0.58 -12.18 2.38 -168.58 -0.40 -12.58 16 10 C 0.21 5.23 3.54 -5.19 -0.02 5.21 16 11 C -0.52 -14.61 8.40 -34.44 -0.29 -14.90 16 12 H 0.08 2.35 7.77 -52.49 -0.41 1.94 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 15 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 16 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 19 C 0.12 2.08 2.51 -67.93 -0.17 1.91 16 20 C -0.16 -2.29 9.04 37.16 0.34 -1.96 16 21 C -0.15 -2.67 8.34 37.16 0.31 -2.36 16 22 C -0.04 -0.60 5.91 -104.22 -0.62 -1.22 16 23 C -0.12 -2.00 8.78 36.01 0.32 -1.69 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.73 6.03 -51.93 -0.31 0.41 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.64 6.34 -52.49 -0.33 1.31 16 30 H 0.03 0.73 5.77 -51.93 -0.30 0.43 16 31 H 0.04 0.95 6.80 -51.93 -0.35 0.59 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 1.33 4.66 -51.93 -0.24 1.09 16 34 H 0.06 0.99 6.91 -51.93 -0.36 0.63 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.05 0.68 7.22 -51.93 -0.38 0.31 16 37 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.55 6.94 -51.93 -0.36 1.19 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 0.93 6.19 -51.93 -0.32 0.61 16 42 H 0.08 1.62 6.55 -51.93 -0.34 1.28 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -32.73 329.85 -7.64 -40.37 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.24 Total: 1.89 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.15 Total: -11.51 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.37 Total: -39.16 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.73 -7.64 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.526 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds