Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38385 * 119.93033 * 2 1 4 4 C 1.38336 * 120.29572 * 180.27904 * 3 2 1 5 5 C 1.37979 * 120.14525 * 359.48385 * 4 3 2 6 6 C 1.39562 * 119.85196 * 0.25845 * 5 4 3 7 7 C 1.47837 * 120.14634 * 179.97438 * 6 5 4 8 8 O 1.21557 * 120.00268 * 124.75220 * 7 6 5 9 9 N 1.34782 * 120.00196 * 304.75394 * 7 6 5 10 10 C 1.46497 * 119.99864 * 183.77930 * 9 7 6 11 11 C 1.50704 * 109.47225 * 90.00003 * 10 9 7 12 12 H 1.07999 * 119.99842 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00071 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00348 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99966 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.47183 * 89.99883 * 15 13 11 17 17 H 1.48499 * 109.47362 * 209.99796 * 15 13 11 18 18 H 1.48500 * 109.47295 * 329.99880 * 15 13 11 19 19 C 1.46498 * 119.99489 * 3.77434 * 9 7 6 20 20 C 1.53002 * 109.46658 * 114.17464 * 19 9 7 21 21 C 1.53002 * 109.46882 * 234.16825 * 19 9 7 22 22 C 1.37938 * 119.92795 * 179.76446 * 2 1 3 23 23 C 1.50699 * 120.07488 * 0.02562 * 22 2 1 24 24 H 1.08992 * 109.47242 * 270.23122 * 1 2 3 25 25 H 1.08998 * 109.47024 * 30.23418 * 1 2 3 26 26 H 1.08999 * 109.46939 * 150.22980 * 1 2 3 27 27 H 1.07999 * 119.85120 * 0.03917 * 3 2 1 28 28 H 1.07997 * 119.92999 * 179.76547 * 4 3 2 29 29 H 1.07999 * 120.07880 * 180.27764 * 5 4 3 30 30 H 1.09003 * 109.46937 * 209.99377 * 10 9 7 31 31 H 1.08997 * 109.47697 * 329.99298 * 10 9 7 32 32 H 0.96994 * 120.00032 * 179.97438 * 14 13 11 33 33 H 1.08991 * 109.47592 * 354.17176 * 19 9 7 34 34 H 1.09000 * 109.46978 * 60.00042 * 20 19 9 35 35 H 1.09007 * 109.47010 * 179.97438 * 20 19 9 36 36 H 1.08997 * 109.47478 * 299.99520 * 20 19 9 37 37 H 1.09003 * 109.47015 * 60.01046 * 21 19 9 38 38 H 1.08997 * 109.46927 * 180.02562 * 21 19 9 39 39 H 1.09000 * 109.47400 * 300.00396 * 21 19 9 40 40 H 1.09006 * 109.46822 * 275.70311 * 23 22 2 41 41 H 1.09003 * 109.47237 * 35.69644 * 23 22 2 42 42 H 1.08996 * 109.47227 * 155.70157 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0058 5 6 4.2813 0.0194 -0.0009 6 6 3.5912 -1.1936 0.0045 7 6 4.3353 -2.4711 0.0092 8 8 4.1232 -3.2948 0.8776 9 7 5.2488 -2.7225 -0.9494 10 6 5.9261 -4.0207 -0.9933 11 6 5.1335 -4.9721 -1.8523 12 1 4.2167 -4.6427 -2.3185 13 6 5.5788 -6.2629 -2.0430 14 7 4.8869 -7.0934 -2.7922 15 14 7.1649 -6.8324 -1.2372 16 1 6.8641 -7.3984 0.1024 17 1 7.8036 -7.8732 -2.0822 18 1 8.0880 -5.6784 -1.0911 19 6 5.5642 -1.6975 -1.9474 20 6 7.0121 -1.2376 -1.7659 21 6 5.3863 -2.2803 -3.3508 22 6 2.1952 -1.1954 0.0049 23 6 1.4417 -2.5006 0.0097 24 1 -0.3633 0.0041 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6539 2.1325 0.0006 28 1 4.1136 2.1475 -0.0096 29 1 5.3613 0.0276 -0.0009 30 1 6.9237 -3.8960 -1.4146 31 1 6.0059 -4.4233 0.0164 32 1 5.2004 -8.0014 -2.9266 33 1 4.8942 -0.8474 -1.8194 34 1 7.6821 -2.0878 -1.8940 35 1 7.2470 -0.4752 -2.5088 36 1 7.1389 -0.8224 -0.7662 37 1 4.3548 -2.6079 -3.4801 38 1 5.6214 -1.5178 -4.0934 39 1 6.0564 -3.1305 -3.4788 40 1 1.1713 -2.7602 1.0333 41 1 0.5375 -2.4003 -0.5907 42 1 2.0714 -3.2851 -0.4099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = -37.031381 kcal Electronic energy + Delta-G solvation = -22169.418888 eV Core-core repulsion = 19113.339318 eV Total energy + Delta-G solvation = -3056.079570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59834 -39.62149 -37.69084 -34.98484 -34.30659 -33.17686 -32.64798 -30.21384 -28.48894 -28.05017 -27.30576 -25.25504 -23.70616 -22.37481 -21.73244 -19.80397 -19.09219 -18.23626 -17.28738 -16.94515 -16.76773 -16.08214 -15.62386 -15.32110 -15.05529 -14.90839 -14.55953 -14.41267 -14.08160 -13.82806 -13.67454 -13.62224 -13.48186 -13.35128 -12.96668 -12.84383 -12.73109 -12.68539 -12.46976 -12.37680 -12.25801 -11.95779 -11.78876 -11.72417 -11.58726 -10.82146 -10.73118 -9.71712 -9.48834 -9.44116 -8.32762 -6.35697 0.10949 0.39902 1.29618 1.33800 1.41625 1.74714 2.24814 2.29893 2.78276 3.00794 3.53727 3.84721 3.88983 3.96249 4.10837 4.21366 4.23131 4.38281 4.41224 4.56564 4.62765 4.67762 4.74946 4.82418 4.83550 4.87203 4.90524 4.92810 4.96343 4.99400 5.05009 5.09606 5.34541 5.36979 5.44061 5.44882 5.50301 5.53245 5.65404 5.68032 6.04240 6.25590 6.63615 6.65764 7.19989 7.34827 8.83915 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.005922 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.012682 B = 4726.834150 C = 5295.399213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.096 4.096 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.140 4.140 7 C 0.545 3.455 8 O -0.590 6.590 9 N -0.585 5.585 10 C 0.225 3.775 11 C -0.520 4.520 12 H 0.031 0.969 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.940 3.060 16 H -0.279 1.279 17 H -0.274 1.274 18 H -0.240 1.240 19 C 0.118 3.882 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.066 4.066 23 C -0.113 4.113 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.162 0.838 28 H 0.165 0.835 29 H 0.138 0.862 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.267 0.733 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 21.999 2.654 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.114 4.114 4 C -0.134 4.134 5 C -0.119 4.119 6 C -0.143 4.143 7 C 0.334 3.666 8 O -0.472 6.472 9 N -0.314 5.314 10 C 0.103 3.897 11 C -0.558 4.558 12 H 0.049 0.951 13 C -0.185 4.185 14 N -0.585 5.585 15 Si 0.763 3.237 16 H -0.204 1.204 17 H -0.199 1.199 18 H -0.163 1.163 19 C 0.016 3.984 20 C -0.214 4.214 21 C -0.204 4.204 22 C -0.067 4.067 23 C -0.170 4.170 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.180 0.820 28 H 0.183 0.817 29 H 0.155 0.845 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.029 21.384 2.996 21.688 hybrid contribution 0.464 -1.663 0.174 1.735 sum -1.566 19.721 3.170 20.035 Atomic orbital electron populations 1.20904 0.89005 1.03906 1.03306 1.20019 0.97692 0.91594 1.00171 1.21589 0.94493 0.97946 0.97381 1.21438 0.94504 0.98019 0.99407 1.21449 1.00673 0.90971 0.98843 1.19857 0.94175 0.93093 1.07190 1.18981 0.79273 0.87048 0.81266 1.90694 1.67112 1.49972 1.39398 1.48077 1.39505 1.15548 1.28302 1.19288 0.93256 0.81239 0.95867 1.21442 1.08562 0.96499 1.29333 0.95085 1.25752 1.00912 0.96380 0.95424 1.70040 1.41143 1.06657 1.40630 0.85832 0.80032 0.79442 0.78391 1.20445 1.19909 1.16304 1.21599 0.98850 0.90222 0.87718 1.22175 0.94057 1.01979 1.03220 1.22016 1.00874 1.01372 0.96171 1.19870 0.91805 0.96235 0.98775 1.20796 1.00017 0.93708 1.02441 0.90143 0.89021 0.91638 0.82005 0.81704 0.84471 0.93185 0.96751 0.92398 0.87483 0.93237 0.88146 0.91727 0.95521 0.89070 0.93296 0.91022 0.89068 0.95551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.60 71.24 0.68 -1.28 16 2 C -0.09 -2.22 5.87 -19.90 -0.12 -2.34 16 3 C -0.10 -1.73 9.69 22.33 0.22 -1.51 16 4 C -0.12 -2.13 10.03 22.23 0.22 -1.90 16 5 C -0.10 -2.60 7.43 22.53 0.17 -2.43 16 6 C -0.14 -4.95 4.82 -20.09 -0.10 -5.04 16 7 C 0.55 24.77 6.04 86.78 0.52 25.29 16 8 O -0.59 -32.22 15.58 -3.89 -0.06 -32.28 16 9 N -0.58 -25.54 2.38 -805.54 -1.92 -27.46 16 10 C 0.23 11.44 3.54 85.63 0.30 11.75 16 11 C -0.52 -31.04 8.40 25.60 0.22 -30.83 16 12 H 0.03 2.08 7.77 -2.91 -0.02 2.06 16 13 C 0.01 0.79 5.47 84.65 0.46 1.25 16 14 N -0.94 -60.44 13.96 21.45 0.30 -60.14 16 15 Si 0.94 45.49 27.47 68.60 1.88 47.38 16 16 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 19 C 0.12 3.89 2.51 44.99 0.11 4.01 16 20 C -0.16 -3.96 9.04 71.98 0.65 -3.31 16 21 C -0.15 -5.18 8.34 71.98 0.60 -4.58 16 22 C -0.07 -2.16 5.91 -19.61 -0.12 -2.27 16 23 C -0.11 -4.05 8.78 71.24 0.63 -3.42 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 26 H 0.06 1.21 6.03 -2.39 -0.01 1.19 16 27 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.14 3.14 6.34 -2.91 -0.02 3.13 16 30 H 0.05 2.34 5.77 -2.39 -0.01 2.33 16 31 H 0.01 0.79 6.80 -2.39 -0.02 0.78 16 32 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 33 H 0.11 3.11 4.66 -2.39 -0.01 3.10 16 34 H 0.05 1.41 6.91 -2.39 -0.02 1.39 16 35 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.06 1.49 7.22 -2.39 -0.02 1.47 16 37 H 0.03 1.08 7.96 -2.39 -0.02 1.06 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.05 1.99 6.94 -2.39 -0.02 1.98 16 40 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.09 2.66 6.19 -2.39 -0.01 2.64 16 42 H 0.03 1.18 6.55 -2.39 -0.02 1.17 16 Total: -1.00 -79.79 329.85 5.61 -74.18 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.95 Total: 14.96 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.46 Total: -16.64 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.62 Total: -87.60 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.06 Total: -32.28 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -79.79 5.61 -74.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.147 kcal (2) G-P(sol) polarization free energy of solvation -79.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds