Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38381 * 119.85221 * 2 1 4 4 C 1.37930 * 120.14432 * 180.25645 * 3 2 1 5 5 C 1.39603 * 119.85195 * 359.44604 * 4 3 2 6 6 C 1.47843 * 120.14185 * 180.25018 * 5 4 3 7 7 O 1.21555 * 119.99194 * 133.26438 * 6 5 4 8 8 N 1.34776 * 120.00587 * 313.26186 * 6 5 4 9 9 C 1.46495 * 120.00097 * 182.60188 * 8 6 5 10 10 C 1.50698 * 109.47194 * 90.00416 * 9 8 6 11 11 H 1.07995 * 120.00252 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99944 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99560 * 179.97438 * 12 10 9 14 14 Si 1.86790 * 120.00072 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47560 * 90.00006 * 14 12 10 16 16 H 1.48504 * 109.47240 * 210.00198 * 14 12 10 17 17 H 1.48500 * 109.47194 * 330.00164 * 14 12 10 18 18 C 1.46503 * 119.99749 * 2.60401 * 8 6 5 19 19 C 1.53005 * 109.46848 * 113.37349 * 18 8 6 20 20 C 1.52993 * 109.47058 * 233.37312 * 18 8 6 21 21 C 1.39553 * 119.70740 * 0.27851 * 5 4 3 22 22 C 1.37973 * 119.85682 * 359.97438 * 21 5 4 23 23 C 1.50700 * 119.92775 * 180.02562 * 22 21 5 24 24 H 1.09004 * 109.46875 * 270.29594 * 1 2 3 25 25 H 1.09002 * 109.47224 * 30.29749 * 1 2 3 26 26 H 1.08999 * 109.47237 * 150.29878 * 1 2 3 27 27 H 1.08003 * 119.92808 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.07613 * 179.71815 * 4 3 2 29 29 H 1.09001 * 109.46903 * 210.00298 * 9 8 6 30 30 H 1.09002 * 109.47435 * 330.00004 * 9 8 6 31 31 H 0.96999 * 119.99150 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46899 * 353.37684 * 18 8 6 33 33 H 1.08996 * 109.46830 * 60.00124 * 19 18 8 34 34 H 1.09002 * 109.46477 * 179.97438 * 19 18 8 35 35 H 1.08996 * 109.46751 * 299.99736 * 19 18 8 36 36 H 1.09003 * 109.46864 * 60.00205 * 20 18 8 37 37 H 1.09002 * 109.47379 * 179.97438 * 20 18 8 38 38 H 1.08996 * 109.47432 * 300.00373 * 20 18 8 39 39 H 1.08011 * 120.06937 * 180.02562 * 21 5 4 40 40 H 1.09000 * 109.46967 * 90.00405 * 23 22 21 41 41 H 1.09002 * 109.47447 * 209.99709 * 23 22 21 42 42 H 1.09000 * 109.47284 * 330.00280 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5751 1.2072 -0.0053 5 6 4.2762 0.0000 0.0010 6 6 5.7547 0.0001 0.0009 7 8 6.3624 -0.7173 0.7713 8 7 6.4286 0.7956 -0.8533 9 6 7.8924 0.7539 -0.8930 10 6 8.3385 -0.2770 -1.8976 11 1 7.6050 -0.8448 -2.4508 12 6 9.6832 -0.4963 -2.1097 13 7 10.0724 -1.3964 -2.9860 14 14 10.9518 0.4851 -1.1523 15 1 11.2870 -0.2317 0.1043 16 1 12.1785 0.6433 -1.9742 17 1 10.3986 1.8240 -0.8259 18 6 5.6971 1.7019 -1.7420 19 6 5.9900 3.1506 -1.3462 20 6 6.1419 1.4682 -3.1871 21 6 3.5754 -1.2067 0.0067 22 6 2.1957 -1.1997 0.0067 23 6 1.4372 -2.5020 0.0135 24 1 -0.3633 0.0053 1.0277 25 1 -0.3634 0.8873 -0.5185 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6523 2.1335 -0.0004 28 1 4.1116 2.1445 -0.0099 29 1 8.2760 1.7324 -1.1818 30 1 8.2753 0.4901 0.0929 31 1 11.0184 -1.5503 -3.1354 32 1 4.6275 1.5108 -1.6555 33 1 7.0596 3.3417 -1.4326 34 1 5.4461 3.8249 -2.0078 35 1 5.6731 3.3171 -0.3167 36 1 5.9332 0.4361 -3.4690 37 1 5.5974 2.1422 -3.8484 38 1 7.2115 1.6593 -3.2735 39 1 4.1119 -2.1441 0.0120 40 1 1.2543 -2.8105 1.0428 41 1 0.4852 -2.3707 -0.5009 42 1 2.0234 -3.2665 -0.4963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = -14.277893 kcal Electronic energy + Delta-G solvation = -21782.359780 eV Core-core repulsion = 18727.266876 eV Total energy + Delta-G solvation = -3055.092904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18548 -38.46078 -36.07028 -33.53853 -32.58492 -32.10288 -31.00933 -28.53967 -27.61110 -26.71204 -26.33806 -22.98208 -21.98293 -21.83486 -20.53313 -18.43653 -16.87661 -16.76150 -15.96703 -15.56342 -15.13380 -14.41674 -14.29165 -14.19263 -13.77571 -13.66007 -13.20192 -12.91796 -12.87621 -12.73756 -12.52094 -12.40008 -12.02991 -11.92258 -11.75624 -11.66513 -11.39472 -11.23531 -10.91935 -10.91037 -10.82970 -10.50120 -10.26216 -10.10083 -9.45417 -9.09191 -8.71690 -8.55908 -8.39287 -7.70013 -6.05845 -4.03293 1.15396 1.43052 3.29139 3.30338 3.36246 3.38770 3.68855 4.01486 4.41840 4.73115 4.80565 4.87784 4.98456 5.10715 5.23567 5.27559 5.32190 5.39591 5.48950 5.52341 5.58557 5.65970 5.72650 5.74361 5.78186 5.95745 6.07839 6.09819 6.13552 6.27120 6.31250 6.40473 6.54084 6.57881 6.62462 6.80216 6.96791 7.01751 7.03233 7.38495 7.63976 8.27083 8.50092 8.93603 9.00365 9.54682 11.07365 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.005084 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.333737 B = 5506.315549 C = 5960.451107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.099 4.099 5 C -0.113 4.113 6 C 0.549 3.451 7 O -0.537 6.537 8 N -0.579 5.579 9 C 0.215 3.785 10 C -0.521 4.521 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.873 3.127 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.118 3.882 19 C -0.165 4.165 20 C -0.153 4.153 21 C -0.067 4.067 22 C -0.094 4.094 23 C -0.116 4.116 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.669 6.879 3.535 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.336 3.664 7 O -0.415 6.415 8 N -0.309 5.309 9 C 0.095 3.905 10 C -0.560 4.560 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.191 1.191 18 C 0.015 3.985 19 C -0.223 4.223 20 C -0.210 4.210 21 C -0.086 4.086 22 C -0.094 4.094 23 C -0.172 4.172 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.148 0.852 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.138 6.428 3.844 19.624 hybrid contribution 0.943 0.469 0.328 1.104 sum -17.195 6.897 4.173 18.991 Atomic orbital electron populations 1.20870 0.91351 1.02818 1.02263 1.19844 0.95891 0.92645 0.99529 1.20890 0.93753 0.97448 1.02223 1.21424 0.94272 0.97471 0.98556 1.20141 0.94116 0.94211 1.03121 1.18235 0.86339 0.80508 0.81326 1.90754 1.69508 1.40932 1.40280 1.47939 1.08434 1.38389 1.36168 1.19647 0.75078 0.97487 0.98311 1.21324 0.92925 1.20260 1.21454 0.90545 1.24841 0.98213 0.94996 0.94957 1.69897 1.15931 1.33341 1.34478 0.86902 0.81478 0.81112 0.80521 1.19961 1.21137 1.19115 1.21408 0.96917 0.89080 0.91142 1.22229 1.03032 0.96146 1.00873 1.22078 1.03363 1.01743 0.93853 1.21078 0.93080 0.97624 0.96801 1.19665 0.93291 0.95071 1.01371 1.20849 0.99892 0.94105 1.02355 0.91188 0.91635 0.91116 0.85798 0.85102 0.95059 0.94619 0.92647 0.89087 0.91634 0.91822 0.92882 0.92143 0.93273 0.90412 0.85228 0.91166 0.91209 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.59 36.01 0.35 -0.59 16 2 C -0.08 -0.91 5.89 -104.53 -0.62 -1.52 16 3 C -0.13 -1.46 9.68 -39.64 -0.38 -1.85 16 4 C -0.10 -1.39 7.31 -39.18 -0.29 -1.68 16 5 C -0.11 -1.97 5.09 -104.97 -0.53 -2.51 16 6 C 0.55 12.03 7.26 -12.33 -0.09 11.94 16 7 O -0.54 -13.96 16.57 5.32 0.09 -13.87 16 8 N -0.58 -12.31 2.38 -168.58 -0.40 -12.71 16 9 C 0.22 5.30 3.52 -5.20 -0.02 5.29 16 10 C -0.52 -14.82 8.41 -34.44 -0.29 -15.11 16 11 H 0.08 2.38 7.75 -52.49 -0.41 1.98 16 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 14 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 15 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 18 C 0.12 1.98 2.43 -67.93 -0.16 1.82 16 19 C -0.16 -2.29 8.82 37.16 0.33 -1.96 16 20 C -0.15 -2.67 8.32 37.15 0.31 -2.37 16 21 C -0.07 -1.08 9.35 -39.19 -0.37 -1.45 16 22 C -0.09 -1.21 5.87 -104.68 -0.61 -1.83 16 23 C -0.12 -1.14 9.60 36.01 0.35 -0.80 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.07 0.51 5.93 -51.93 -0.31 0.20 16 27 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.13 1.69 5.27 -52.49 -0.28 1.41 16 29 H 0.03 0.74 5.79 -51.93 -0.30 0.43 16 30 H 0.04 0.95 6.81 -51.93 -0.35 0.60 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.09 1.38 4.30 -51.93 -0.22 1.16 16 33 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.69 7.05 -51.93 -0.37 0.32 16 36 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 39 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.56 5.93 -51.93 -0.31 0.25 16 42 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -33.61 331.52 -7.56 -41.17 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.22 Total: 0.88 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.13 Total: -10.61 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.37 Total: -39.56 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.61 -7.56 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.891 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds