Wall clock time and date at job start Mon Mar 30 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38381 * 119.85221 * 2 1 4 4 C 1.37930 * 120.14432 * 180.25645 * 3 2 1 5 5 C 1.39603 * 119.85195 * 359.44604 * 4 3 2 6 6 C 1.47843 * 120.14185 * 180.25018 * 5 4 3 7 7 O 1.21555 * 119.99194 * 133.26438 * 6 5 4 8 8 N 1.34776 * 120.00587 * 313.26186 * 6 5 4 9 9 C 1.46495 * 120.00097 * 182.60188 * 8 6 5 10 10 C 1.50698 * 109.47194 * 90.00416 * 9 8 6 11 11 H 1.07995 * 120.00252 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99944 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99560 * 179.97438 * 12 10 9 14 14 Si 1.86790 * 120.00072 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47560 * 90.00006 * 14 12 10 16 16 H 1.48504 * 109.47240 * 210.00198 * 14 12 10 17 17 H 1.48500 * 109.47194 * 330.00164 * 14 12 10 18 18 C 1.46503 * 119.99749 * 2.60401 * 8 6 5 19 19 C 1.53005 * 109.46848 * 113.37349 * 18 8 6 20 20 C 1.52993 * 109.47058 * 233.37312 * 18 8 6 21 21 C 1.39553 * 119.70740 * 0.27851 * 5 4 3 22 22 C 1.37973 * 119.85682 * 359.97438 * 21 5 4 23 23 C 1.50700 * 119.92775 * 180.02562 * 22 21 5 24 24 H 1.09004 * 109.46875 * 270.29594 * 1 2 3 25 25 H 1.09002 * 109.47224 * 30.29749 * 1 2 3 26 26 H 1.08999 * 109.47237 * 150.29878 * 1 2 3 27 27 H 1.08003 * 119.92808 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.07613 * 179.71815 * 4 3 2 29 29 H 1.09001 * 109.46903 * 210.00298 * 9 8 6 30 30 H 1.09002 * 109.47435 * 330.00004 * 9 8 6 31 31 H 0.96999 * 119.99150 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46899 * 353.37684 * 18 8 6 33 33 H 1.08996 * 109.46830 * 60.00124 * 19 18 8 34 34 H 1.09002 * 109.46477 * 179.97438 * 19 18 8 35 35 H 1.08996 * 109.46751 * 299.99736 * 19 18 8 36 36 H 1.09003 * 109.46864 * 60.00205 * 20 18 8 37 37 H 1.09002 * 109.47379 * 179.97438 * 20 18 8 38 38 H 1.08996 * 109.47432 * 300.00373 * 20 18 8 39 39 H 1.08011 * 120.06937 * 180.02562 * 21 5 4 40 40 H 1.09000 * 109.46967 * 90.00405 * 23 22 21 41 41 H 1.09002 * 109.47447 * 209.99709 * 23 22 21 42 42 H 1.09000 * 109.47284 * 330.00280 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5751 1.2072 -0.0053 5 6 4.2762 0.0000 0.0010 6 6 5.7547 0.0001 0.0009 7 8 6.3624 -0.7173 0.7713 8 7 6.4286 0.7956 -0.8533 9 6 7.8924 0.7539 -0.8930 10 6 8.3385 -0.2770 -1.8976 11 1 7.6050 -0.8448 -2.4508 12 6 9.6832 -0.4963 -2.1097 13 7 10.0724 -1.3964 -2.9860 14 14 10.9518 0.4851 -1.1523 15 1 11.2870 -0.2317 0.1043 16 1 12.1785 0.6433 -1.9742 17 1 10.3986 1.8240 -0.8259 18 6 5.6971 1.7019 -1.7420 19 6 5.9900 3.1506 -1.3462 20 6 6.1419 1.4682 -3.1871 21 6 3.5754 -1.2067 0.0067 22 6 2.1957 -1.1997 0.0067 23 6 1.4372 -2.5020 0.0135 24 1 -0.3633 0.0053 1.0277 25 1 -0.3634 0.8873 -0.5185 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6523 2.1335 -0.0004 28 1 4.1116 2.1445 -0.0099 29 1 8.2760 1.7324 -1.1818 30 1 8.2753 0.4901 0.0929 31 1 11.0184 -1.5503 -3.1354 32 1 4.6275 1.5108 -1.6555 33 1 7.0596 3.3417 -1.4326 34 1 5.4461 3.8249 -2.0078 35 1 5.6731 3.3171 -0.3167 36 1 5.9332 0.4361 -3.4690 37 1 5.5974 2.1422 -3.8484 38 1 7.2115 1.6593 -3.2735 39 1 4.1119 -2.1441 0.0120 40 1 1.2543 -2.8105 1.0428 41 1 0.4852 -2.3707 -0.5009 42 1 2.0234 -3.2665 -0.4963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:13 Heat of formation + Delta-G solvation = -35.246806 kcal Electronic energy + Delta-G solvation = -21783.269060 eV Core-core repulsion = 18727.266876 eV Total energy + Delta-G solvation = -3056.002185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55806 -39.77669 -37.72926 -35.09070 -34.26524 -33.08019 -32.66723 -30.29867 -28.62580 -27.97946 -27.50833 -24.71648 -23.39301 -23.01264 -21.81993 -19.94287 -19.10313 -18.22020 -17.33912 -16.75942 -16.64995 -16.05328 -15.68502 -15.34076 -15.06788 -14.99799 -14.62470 -14.50130 -14.14137 -13.85438 -13.64820 -13.55607 -13.46828 -13.27782 -12.99138 -12.80443 -12.76961 -12.65238 -12.41452 -12.33674 -12.19666 -11.96409 -11.84486 -11.67954 -11.60185 -10.82927 -10.77813 -9.80678 -9.53871 -9.39276 -8.33548 -6.36836 0.01821 0.37706 1.29497 1.34048 1.41888 1.73853 2.21290 2.29636 2.75759 2.99968 3.51789 3.83257 3.91674 3.96184 4.01344 4.21289 4.27551 4.31665 4.41429 4.58453 4.69497 4.73833 4.79302 4.82575 4.83302 4.87314 4.89266 4.97126 4.98241 5.01047 5.05049 5.20065 5.33976 5.34381 5.40065 5.43540 5.46136 5.52647 5.64476 5.67243 6.01888 6.24393 6.61620 6.63806 7.17873 7.32164 8.83298 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.005084 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.333737 B = 5506.315549 C = 5960.451107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.114 4.114 4 C -0.098 4.098 5 C -0.143 4.143 6 C 0.539 3.461 7 O -0.597 6.597 8 N -0.583 5.583 9 C 0.226 3.774 10 C -0.522 4.522 11 H 0.029 0.971 12 C 0.012 3.988 13 N -0.945 5.945 14 Si 0.942 3.058 15 H -0.279 1.279 16 H -0.273 1.273 17 H -0.239 1.239 18 C 0.112 3.888 19 C -0.158 4.158 20 C -0.147 4.147 21 C -0.094 4.094 22 C -0.097 4.097 23 C -0.115 4.115 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.166 0.834 28 H 0.145 0.855 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.267 0.733 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.858 10.216 4.015 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.146 4.146 6 C 0.329 3.671 7 O -0.479 6.479 8 N -0.312 5.312 9 C 0.104 3.896 10 C -0.561 4.561 11 H 0.048 0.952 12 C -0.186 4.186 13 N -0.585 5.585 14 Si 0.765 3.235 15 H -0.204 1.204 16 H -0.198 1.198 17 H -0.162 1.162 18 C 0.010 3.990 19 C -0.216 4.216 20 C -0.205 4.205 21 C -0.113 4.113 22 C -0.097 4.097 23 C -0.172 4.172 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.184 0.816 28 H 0.163 0.837 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.370 9.803 4.295 23.900 hybrid contribution 1.763 -0.655 0.120 1.884 sum -19.607 9.149 4.415 22.082 Atomic orbital electron populations 1.20982 0.88080 1.04455 1.03671 1.20372 0.98144 0.91754 0.96671 1.21355 0.92619 0.99285 0.99936 1.21560 0.95518 0.96267 0.98278 1.19866 0.91142 0.96364 1.07233 1.19089 0.88526 0.79217 0.80291 1.90690 1.71264 1.43244 1.42735 1.48063 1.07329 1.39145 1.36703 1.19300 0.77757 0.96913 0.95676 1.21452 0.92340 1.20645 1.21628 0.95239 1.25786 1.00616 0.96217 0.95967 1.70049 1.16676 1.35375 1.36420 0.85799 0.78636 0.80574 0.78497 1.20435 1.19827 1.16171 1.21798 0.97549 0.90161 0.89489 1.22199 1.02712 0.94052 1.02634 1.22020 1.02087 1.00687 0.95682 1.21053 0.94862 0.96310 0.99071 1.19973 0.91839 0.97409 1.00453 1.20927 1.00488 0.92400 1.03346 0.89654 0.89556 0.90043 0.81623 0.83748 0.92963 0.96763 0.92359 0.86931 0.93116 0.87903 0.91605 0.95580 0.88895 0.93299 0.88070 0.90058 0.88502 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.59 71.24 0.68 -0.55 16 2 C -0.07 -1.33 5.89 -19.81 -0.12 -1.45 16 3 C -0.11 -2.18 9.68 22.23 0.22 -1.97 16 4 C -0.10 -2.54 7.31 22.53 0.16 -2.38 16 5 C -0.14 -5.14 5.09 -20.09 -0.10 -5.24 16 6 C 0.54 25.04 7.26 86.79 0.63 25.67 16 7 O -0.60 -33.56 16.57 -3.89 -0.06 -33.62 16 8 N -0.58 -25.69 2.38 -805.54 -1.92 -27.61 16 9 C 0.23 11.51 3.52 85.63 0.30 11.82 16 10 C -0.52 -31.48 8.41 25.60 0.22 -31.26 16 11 H 0.03 2.00 7.75 -2.91 -0.02 1.97 16 12 C 0.01 0.72 5.47 84.66 0.46 1.18 16 13 N -0.94 -60.86 13.96 21.45 0.30 -60.56 16 14 Si 0.94 45.63 27.47 68.60 1.88 47.51 16 15 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 18 C 0.11 3.66 2.43 44.99 0.11 3.77 16 19 C -0.16 -3.92 8.82 71.98 0.63 -3.28 16 20 C -0.15 -5.18 8.32 71.98 0.60 -4.58 16 21 C -0.09 -3.19 9.35 22.52 0.21 -2.98 16 22 C -0.10 -2.38 5.87 -19.90 -0.12 -2.50 16 23 C -0.12 -2.10 9.60 71.24 0.68 -1.42 16 24 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 26 H 0.08 0.74 5.93 -2.39 -0.01 0.72 16 27 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.14 3.27 5.27 -2.91 -0.02 3.26 16 29 H 0.05 2.44 5.79 -2.39 -0.01 2.43 16 30 H 0.01 0.79 6.81 -2.39 -0.02 0.78 16 31 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 32 H 0.11 3.22 4.30 -2.39 -0.01 3.21 16 33 H 0.05 1.42 6.94 -2.39 -0.02 1.40 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.48 7.05 -2.39 -0.02 1.46 16 36 H 0.02 1.05 7.93 -2.39 -0.02 1.04 16 37 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 1.98 6.92 -2.39 -0.02 1.97 16 39 H 0.10 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.22 5.93 -2.39 -0.01 1.21 16 42 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 Total: -1.00 -81.49 331.52 5.73 -75.76 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.96 Total: 13.68 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.57 Total: -15.16 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -1.62 Total: -88.17 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.06 Total: -33.62 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -81.49 5.73 -75.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.510 kcal (2) G-P(sol) polarization free energy of solvation -81.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds