Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47064 * 84.72709 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47162 * 90.00410 * 12 11 9 14 14 H 1.07998 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47303 * 119.99759 * 17 15 13 20 20 H 1.48495 * 109.47340 * 239.99921 * 17 15 13 21 21 C 1.46490 * 120.00111 * 0.02562 * 11 9 8 22 22 C 1.52998 * 109.47580 * 119.99521 * 21 11 9 23 23 C 1.53001 * 109.47255 * 239.99633 * 21 11 9 24 24 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 25 25 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 26 26 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 27 27 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 28 28 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 29 29 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 32 32 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 33 33 H 1.09000 * 109.47018 * 209.99971 * 12 11 9 34 34 H 1.09000 * 109.47828 * 330.00266 * 12 11 9 35 35 H 0.97001 * 119.99961 * 180.02562 * 16 15 13 36 36 H 1.09007 * 109.47357 * 359.97438 * 21 11 9 37 37 H 1.09007 * 109.46586 * 59.99760 * 22 21 11 38 38 H 1.08997 * 109.47808 * 179.97438 * 22 21 11 39 39 H 1.08997 * 109.47114 * 300.00646 * 22 21 11 40 40 H 1.09007 * 109.47319 * 59.99704 * 23 21 11 41 41 H 1.08990 * 109.47517 * 179.97438 * 23 21 11 42 42 H 1.08997 * 109.46923 * 300.00524 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0798 -2.8782 -1.4016 10 8 1.4006 -2.1577 -2.3229 11 7 0.3980 -4.0158 -1.6414 12 6 0.0439 -4.3817 -3.0151 13 6 1.1480 -5.2149 -3.6135 14 1 2.0258 -5.4481 -3.0291 15 6 1.0374 -5.6794 -4.9069 16 7 -0.0318 -5.3958 -5.6183 17 14 2.4056 -6.7126 -5.6484 18 1 3.4902 -6.8884 -4.6494 19 1 1.8681 -8.0418 -6.0352 20 1 2.9466 -6.0287 -6.8503 21 6 0.0111 -4.8864 -0.5286 22 6 -1.5124 -5.0228 -0.4935 23 6 0.6425 -6.2671 -0.7177 24 1 -0.3633 0.0044 1.0277 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6583 2.1327 0.0008 28 1 4.1204 2.1326 -0.0096 29 1 5.3516 0.0000 -0.0106 30 1 4.1206 -2.1322 -0.0005 31 1 0.5365 -2.3945 0.6047 32 1 2.0715 -3.2814 0.4446 33 1 -0.8827 -4.9557 -3.0108 34 1 -0.0914 -3.4776 -3.6086 35 1 -0.1097 -5.7229 -6.5281 36 1 0.3591 -4.4535 0.4094 37 1 -1.8600 -5.4559 -1.4315 38 1 -1.8003 -5.6709 0.3343 39 1 -1.9622 -4.0392 -0.3588 40 1 1.7280 -6.1700 -0.7427 41 1 0.3551 -6.9147 0.1104 42 1 0.2950 -6.7001 -1.6557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -24.322363 kcal Electronic energy + Delta-G solvation = -21770.977997 eV Core-core repulsion = 18715.449532 eV Total energy + Delta-G solvation = -3055.528465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85322 -38.51929 -35.88811 -33.20423 -32.71969 -31.93851 -30.78972 -28.50572 -27.01043 -26.70127 -26.05077 -22.95336 -21.87702 -21.31398 -20.52994 -17.97359 -16.65067 -16.44405 -16.20185 -15.60428 -15.13829 -14.64831 -14.23377 -14.03911 -13.64674 -13.46531 -13.00364 -12.97064 -12.73123 -12.68452 -12.31475 -12.09227 -11.83373 -11.66405 -11.59376 -11.51805 -11.19895 -10.92152 -10.87450 -10.75807 -10.72177 -10.51220 -10.34992 -9.98952 -9.49800 -8.95516 -8.54745 -8.39991 -8.30526 -7.60062 -6.00970 -4.03851 1.55173 1.60433 3.30682 3.38539 3.41288 3.49680 3.81752 4.12957 4.47564 4.89011 4.96952 5.13162 5.17299 5.20909 5.30955 5.35302 5.43638 5.48486 5.58661 5.66811 5.69517 5.71918 5.76865 5.88766 6.00022 6.01803 6.16111 6.22553 6.30531 6.35659 6.37843 6.61041 6.65546 6.68472 6.86694 6.97358 7.14095 7.22915 7.50878 7.62024 7.96496 8.28990 8.49672 8.95762 9.16989 9.60351 11.07252 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.005421 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.135465 B = 5164.116306 C = 5841.684489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.123 4.123 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.104 4.104 7 C -0.055 4.055 8 C -0.108 4.108 9 C 0.507 3.493 10 O -0.531 6.531 11 N -0.595 5.595 12 C 0.246 3.754 13 C -0.516 4.516 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.132 3.868 22 C -0.162 4.162 23 C -0.157 4.157 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 6.449 15.644 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.122 4.122 7 C -0.055 4.055 8 C -0.148 4.148 9 C 0.293 3.707 10 O -0.408 6.408 11 N -0.327 5.327 12 C 0.127 3.873 13 C -0.555 4.555 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.536 5.536 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.028 3.972 22 C -0.220 4.220 23 C -0.215 4.215 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.248 6.786 14.949 16.465 hybrid contribution 0.812 -0.714 -0.596 1.235 sum 2.059 6.072 14.353 15.720 Atomic orbital electron populations 1.20816 0.91537 1.03311 1.01591 1.19681 0.95888 0.92577 0.98802 1.20928 0.94251 0.97171 1.01735 1.21029 0.94287 0.97775 1.01070 1.21018 0.99526 0.92536 1.01414 1.20983 0.93544 0.98151 0.99527 1.19245 0.93442 0.93473 0.99360 1.20806 1.01162 0.95685 0.97104 1.20132 0.79020 0.81649 0.89880 1.90697 1.53050 1.51301 1.45764 1.48336 1.54600 1.20509 1.09291 1.19221 0.95847 0.96523 0.75688 1.21478 1.04369 1.31540 0.98121 0.92392 1.24923 0.95818 0.96601 0.96863 1.69941 1.27644 1.45936 1.10031 0.86509 0.82215 0.79816 0.79288 1.19854 1.21049 1.20988 1.20997 0.94641 0.92009 0.89587 1.22159 0.95706 1.01495 1.02631 1.22141 1.00947 0.95739 1.02681 0.91463 0.91598 0.91255 0.86434 0.86526 0.86428 0.86308 0.88731 0.88800 0.94845 0.94168 0.92896 0.90787 0.91304 0.92301 0.92955 0.92792 0.93305 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.22 36.00 0.33 -1.19 16 2 C -0.07 -1.04 5.88 -104.63 -0.62 -1.65 16 3 C -0.12 -1.66 9.70 -39.58 -0.38 -2.05 16 4 C -0.12 -1.60 10.05 -39.58 -0.40 -1.99 16 5 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 6 C -0.10 -1.57 9.68 -39.58 -0.38 -1.95 16 7 C -0.05 -0.87 4.37 -104.62 -0.46 -1.33 16 8 C -0.11 -1.65 3.46 -29.03 -0.10 -1.75 16 9 C 0.51 10.54 6.87 -10.98 -0.08 10.46 16 10 O -0.53 -13.59 15.61 5.56 0.09 -13.51 16 11 N -0.59 -12.36 2.39 -167.47 -0.40 -12.76 16 12 C 0.25 6.34 4.59 -5.19 -0.02 6.32 16 13 C -0.52 -14.37 7.83 -34.44 -0.27 -14.64 16 14 H 0.06 1.62 7.63 -52.49 -0.40 1.22 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 C 0.13 2.12 3.17 -67.94 -0.22 1.90 16 22 C -0.16 -2.32 9.17 37.16 0.34 -1.98 16 23 C -0.16 -2.56 8.47 37.16 0.31 -2.25 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 26 H 0.07 1.03 6.15 -51.93 -0.32 0.71 16 27 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.09 1.21 6.65 -51.93 -0.35 0.87 16 32 H 0.09 1.27 7.70 -51.93 -0.40 0.87 16 33 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 34 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 0.97 5.77 -51.93 -0.30 0.67 16 37 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -33.16 340.78 -8.44 -41.60 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.55 Total: 1.11 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.43 Total: -12.62 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.34 Total: -38.65 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.16 -8.44 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.273 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds