Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47064 * 84.72709 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47162 * 90.00410 * 12 11 9 14 14 H 1.07998 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47303 * 119.99759 * 17 15 13 20 20 H 1.48495 * 109.47340 * 239.99921 * 17 15 13 21 21 C 1.46490 * 120.00111 * 0.02562 * 11 9 8 22 22 C 1.52998 * 109.47580 * 119.99521 * 21 11 9 23 23 C 1.53001 * 109.47255 * 239.99633 * 21 11 9 24 24 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 25 25 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 26 26 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 27 27 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 28 28 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 29 29 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 32 32 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 33 33 H 1.09000 * 109.47018 * 209.99971 * 12 11 9 34 34 H 1.09000 * 109.47828 * 330.00266 * 12 11 9 35 35 H 0.97001 * 119.99961 * 180.02562 * 16 15 13 36 36 H 1.09007 * 109.47357 * 359.97438 * 21 11 9 37 37 H 1.09007 * 109.46586 * 59.99760 * 22 21 11 38 38 H 1.08997 * 109.47808 * 179.97438 * 22 21 11 39 39 H 1.08997 * 109.47114 * 300.00646 * 22 21 11 40 40 H 1.09007 * 109.47319 * 59.99704 * 23 21 11 41 41 H 1.08990 * 109.47517 * 179.97438 * 23 21 11 42 42 H 1.08997 * 109.46923 * 300.00524 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0798 -2.8782 -1.4016 10 8 1.4006 -2.1577 -2.3229 11 7 0.3980 -4.0158 -1.6414 12 6 0.0439 -4.3817 -3.0151 13 6 1.1480 -5.2149 -3.6135 14 1 2.0258 -5.4481 -3.0291 15 6 1.0374 -5.6794 -4.9069 16 7 -0.0318 -5.3958 -5.6183 17 14 2.4056 -6.7126 -5.6484 18 1 3.4902 -6.8884 -4.6494 19 1 1.8681 -8.0418 -6.0352 20 1 2.9466 -6.0287 -6.8503 21 6 0.0111 -4.8864 -0.5286 22 6 -1.5124 -5.0228 -0.4935 23 6 0.6425 -6.2671 -0.7177 24 1 -0.3633 0.0044 1.0277 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6583 2.1327 0.0008 28 1 4.1204 2.1326 -0.0096 29 1 5.3516 0.0000 -0.0106 30 1 4.1206 -2.1322 -0.0005 31 1 0.5365 -2.3945 0.6047 32 1 2.0715 -3.2814 0.4446 33 1 -0.8827 -4.9557 -3.0108 34 1 -0.0914 -3.4776 -3.6086 35 1 -0.1097 -5.7229 -6.5281 36 1 0.3591 -4.4535 0.4094 37 1 -1.8600 -5.4559 -1.4315 38 1 -1.8003 -5.6709 0.3343 39 1 -1.9622 -4.0392 -0.3588 40 1 1.7280 -6.1700 -0.7427 41 1 0.3551 -6.9147 0.1104 42 1 0.2950 -6.7001 -1.6557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = -43.233448 kcal Electronic energy + Delta-G solvation = -21771.798044 eV Core-core repulsion = 18715.449532 eV Total energy + Delta-G solvation = -3056.348512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21759 -39.83384 -37.48480 -34.99529 -34.15114 -33.06268 -32.38630 -30.08985 -28.43037 -27.93681 -27.36233 -24.87180 -23.06494 -22.65595 -21.69755 -19.50013 -18.60179 -18.17086 -17.33114 -16.83036 -16.79532 -16.15385 -15.69824 -15.51194 -14.95412 -14.81993 -14.38330 -14.22695 -14.04267 -13.92039 -13.81389 -13.34274 -13.25364 -13.11024 -12.91495 -12.82931 -12.80734 -12.72051 -12.51648 -12.20469 -12.09179 -11.83495 -11.78578 -11.59802 -11.48362 -10.61742 -10.59608 -9.64148 -9.40771 -9.38145 -8.19427 -6.31012 0.47420 0.54674 1.34010 1.36678 1.47707 1.89096 2.32317 2.46098 2.93221 3.10398 3.72615 3.88924 3.94224 4.04306 4.14839 4.20662 4.30812 4.38940 4.43766 4.46618 4.54937 4.73287 4.80657 4.84791 4.87779 4.89395 4.96387 5.03471 5.06779 5.14040 5.19769 5.27968 5.33380 5.45624 5.59170 5.61479 5.64687 5.66222 5.78269 5.92357 6.12645 6.19363 6.75843 6.87984 7.32916 7.56102 8.88041 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.005421 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.135465 B = 5164.116306 C = 5841.684489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.136 4.136 6 C -0.124 4.124 7 C -0.081 4.081 8 C -0.092 4.092 9 C 0.500 3.500 10 O -0.591 6.591 11 N -0.599 5.599 12 C 0.265 3.735 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.960 3.040 18 H -0.267 1.267 19 H -0.270 1.270 20 H -0.285 1.285 21 C 0.124 3.876 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.140 0.860 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.025 0.975 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.116 0.884 37 H 0.036 0.964 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 6.376 18.155 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.142 4.142 7 C -0.082 4.082 8 C -0.131 4.131 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.330 5.330 12 C 0.144 3.856 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.191 1.191 19 H -0.195 1.195 20 H -0.211 1.211 21 C 0.021 3.979 22 C -0.214 4.214 23 C -0.210 4.210 24 H 0.114 0.886 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.043 0.957 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.056 0.944 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.072 6.688 17.513 18.860 hybrid contribution 0.539 -0.629 -1.350 1.584 sum 2.611 6.059 16.163 17.457 Atomic orbital electron populations 1.20820 0.90657 1.02367 1.03119 1.20011 0.96866 0.92979 0.98911 1.21286 0.94890 0.97676 1.01221 1.21435 0.94362 0.98820 0.99656 1.21361 1.00839 0.92317 1.00866 1.21233 0.93704 0.99147 1.00121 1.19417 0.93972 0.93879 1.00912 1.20751 1.02854 0.96398 0.93127 1.21127 0.77588 0.80582 0.91774 1.90656 1.55254 1.53050 1.48181 1.48377 1.54515 1.21550 1.08575 1.18613 0.95176 0.93553 0.78274 1.21689 1.04482 1.31460 0.98457 0.92914 1.25794 0.98194 0.97900 0.97407 1.70061 1.29536 1.47156 1.10445 0.85479 0.79298 0.78549 0.78184 1.19132 1.19514 1.21135 1.21435 0.95909 0.91277 0.89276 1.22123 0.94295 1.02503 1.02512 1.22084 1.00124 0.96419 1.02392 0.88595 0.91106 0.93589 0.84237 0.83671 0.84230 0.85932 0.85789 0.86516 0.95695 0.99298 0.92670 0.86632 0.94446 0.88415 0.92363 0.93863 0.89117 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.83 9.22 71.24 0.66 -2.17 16 2 C -0.09 -2.52 5.88 -19.87 -0.12 -2.64 16 3 C -0.13 -3.36 9.70 22.27 0.22 -3.15 16 4 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 5 C -0.14 -3.46 10.05 22.27 0.22 -3.24 16 6 C -0.12 -3.64 9.68 22.27 0.22 -3.42 16 7 C -0.08 -2.50 4.37 -19.86 -0.09 -2.59 16 8 C -0.09 -2.68 3.46 29.10 0.10 -2.58 16 9 C 0.50 21.08 6.87 87.66 0.60 21.68 16 10 O -0.59 -31.57 15.61 -3.03 -0.05 -31.61 16 11 N -0.60 -25.30 2.39 -802.15 -1.91 -27.22 16 12 C 0.27 14.39 4.59 85.64 0.39 14.78 16 13 C -0.52 -30.11 7.83 25.60 0.20 -29.91 16 14 H 0.05 3.03 7.63 -2.91 -0.02 3.00 16 15 C 0.01 0.30 5.46 84.65 0.46 0.77 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 17 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 21 C 0.12 3.75 3.17 44.99 0.14 3.89 16 22 C -0.16 -4.23 9.17 71.98 0.66 -3.57 16 23 C -0.15 -4.74 8.47 71.98 0.61 -4.13 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 26 H 0.05 1.35 6.15 -2.39 -0.01 1.34 16 27 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.12 2.83 6.65 -2.39 -0.02 2.81 16 32 H 0.12 2.84 7.70 -2.39 -0.02 2.82 16 33 H 0.03 1.38 6.43 -2.39 -0.02 1.37 16 34 H -0.01 -0.71 7.42 -2.39 -0.02 -0.73 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.12 2.59 5.77 -2.38 -0.01 2.57 16 37 H 0.04 1.24 6.66 -2.38 -0.02 1.22 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.67 6.92 -2.39 -0.02 1.65 16 Total: -1.00 -76.80 340.78 5.84 -70.96 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.99 Total: 16.04 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.50 Total: -19.01 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -1.63 Total: -84.19 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.61 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -76.80 5.84 -70.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.726 kcal (2) G-P(sol) polarization free energy of solvation -76.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds