Wall clock time and date at job start Mon Mar 30 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38356 * 119.92708 * 2 1 4 4 C 1.38360 * 120.29514 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.93094 * 179.97438 * 4 3 2 6 6 C 1.37959 * 120.14432 * 359.95570 * 4 3 2 7 7 C 1.39577 * 119.85101 * 0.02562 * 6 4 3 8 8 C 1.47847 * 120.14485 * 179.72409 * 7 6 4 9 9 O 1.21549 * 120.00168 * 317.92671 * 8 7 6 10 10 N 1.34780 * 119.99835 * 137.92382 * 8 7 6 11 11 C 1.46498 * 119.99751 * 212.06676 * 10 8 7 12 12 C 1.50703 * 109.47140 * 90.00392 * 11 10 8 13 13 H 1.08003 * 120.00059 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00325 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99768 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46737 * 90.00334 * 16 14 12 18 18 H 1.48506 * 109.47163 * 210.00054 * 16 14 12 19 19 H 1.48496 * 109.47291 * 330.00148 * 16 14 12 20 20 C 1.46494 * 120.00033 * 32.06839 * 10 8 7 21 21 C 1.52998 * 109.47437 * 301.69310 * 20 10 8 22 22 C 1.52998 * 109.47338 * 61.69427 * 20 10 8 23 23 C 1.37957 * 119.92932 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47137 * 89.99831 * 1 2 3 25 25 H 1.09002 * 109.46812 * 210.00421 * 1 2 3 26 26 H 1.09001 * 109.47308 * 329.99577 * 1 2 3 27 27 H 1.08000 * 119.85528 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47171 * 269.97690 * 5 4 3 29 29 H 1.09001 * 109.46849 * 29.98082 * 5 4 3 30 30 H 1.09006 * 109.46795 * 149.97728 * 5 4 3 31 31 H 1.07998 * 120.07798 * 179.97438 * 6 4 3 32 32 H 1.09004 * 109.47232 * 210.00029 * 11 10 8 33 33 H 1.09000 * 109.47740 * 330.00576 * 11 10 8 34 34 H 0.96996 * 119.99984 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.47012 * 181.68876 * 20 10 8 36 36 H 1.08997 * 109.46945 * 13.70219 * 21 20 10 37 37 H 1.09001 * 109.47146 * 133.70280 * 21 20 10 38 38 H 1.09007 * 109.46799 * 253.70593 * 21 20 10 39 39 H 1.09001 * 109.47686 * 103.42447 * 22 20 10 40 40 H 1.08998 * 109.47332 * 223.43288 * 22 20 10 41 41 H 1.09008 * 109.47172 * 343.42755 * 22 20 10 42 42 H 1.07999 * 120.07176 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1991 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.3243 2.5188 -0.0011 6 6 4.2813 0.0194 -0.0001 7 6 3.5911 -1.1938 0.0002 8 6 4.3352 -2.4713 -0.0055 9 8 5.3133 -2.6018 -0.7152 10 7 3.9289 -3.4913 0.7763 11 6 4.9122 -4.4225 1.3351 12 6 5.3806 -3.9145 2.6744 13 1 4.9857 -2.9902 3.0696 14 6 6.3133 -4.6296 3.3952 15 7 6.7946 -5.7549 2.9138 16 14 6.8944 -3.9995 5.0549 17 1 6.0183 -4.5414 6.1244 18 1 8.2929 -4.4405 5.2898 19 1 6.8341 -2.5158 5.0699 20 6 2.5042 -3.6687 1.0672 21 6 1.9597 -2.4066 1.7392 22 6 1.7447 -3.9202 -0.2370 23 6 2.1953 -1.1956 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6537 2.1323 0.0004 28 1 4.5035 2.8344 -1.0289 29 1 3.7295 3.2741 0.5125 30 1 5.2778 2.3959 0.5128 31 1 5.3612 0.0276 -0.0010 32 1 4.4540 -5.4037 1.4588 33 1 5.7633 -4.5015 0.6587 34 1 7.4511 -6.2578 3.4207 35 1 2.3729 -4.5209 1.7341 36 1 2.6787 -1.5954 1.6252 37 1 1.0163 -2.1244 1.2718 38 1 1.7963 -2.6011 2.7992 39 1 1.5042 -4.9802 -0.3189 40 1 0.8237 -3.3373 -0.2393 41 1 2.3654 -3.6222 -1.0821 42 1 1.6553 -2.1309 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:23 Heat of formation + Delta-G solvation = 55.831572 kcal Electronic energy + Delta-G solvation = -22226.013781 eV Core-core repulsion = 19173.961051 eV Total energy + Delta-G solvation = -3052.052730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01379 -38.16933 -36.49536 -33.80926 -33.03284 -31.88752 -31.05165 -27.53527 -27.29789 -26.98695 -26.12025 -23.92787 -22.11656 -21.87200 -20.33601 -18.03243 -16.81103 -16.46911 -15.96585 -15.77234 -14.93394 -14.59461 -14.28822 -14.23980 -14.03283 -13.50052 -13.26259 -13.23460 -12.82872 -12.58039 -12.34268 -12.22809 -12.12191 -11.95790 -11.68961 -11.44782 -11.24043 -11.15101 -11.02411 -10.85940 -10.61186 -10.52283 -10.13710 -10.00193 -9.64515 -9.09529 -8.51446 -8.45135 -7.90467 -7.56316 -6.06595 -4.12919 1.27871 1.58262 3.22712 3.27828 3.34701 3.39124 3.82724 4.03773 4.41519 4.83892 4.88239 4.92157 5.02760 5.20901 5.26792 5.30298 5.30720 5.41114 5.46445 5.54156 5.61279 5.65646 5.71334 5.77480 5.84351 5.87593 5.91228 5.98434 6.16576 6.20942 6.28863 6.38928 6.52646 6.60037 6.68305 6.74363 7.09148 7.15463 7.43148 7.60823 7.91851 8.20881 8.41844 8.81605 8.99832 9.52925 11.00656 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.006027 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.044559 B = 4644.341543 C = 5216.958965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.129 4.129 3 C -0.097 4.097 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.066 4.066 7 C -0.139 4.139 8 C 0.571 3.429 9 O -0.532 6.532 10 N -0.608 5.608 11 C 0.248 3.752 12 C -0.533 4.533 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.137 3.863 21 C -0.200 4.200 22 C -0.178 4.178 23 C -0.093 4.093 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 11.394 -4.749 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.129 4.129 3 C -0.115 4.115 4 C -0.112 4.112 5 C -0.165 4.165 6 C -0.085 4.085 7 C -0.142 4.142 8 C 0.359 3.641 9 O -0.409 6.409 10 N -0.341 5.341 11 C 0.129 3.871 12 C -0.572 4.572 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.032 3.968 21 C -0.256 4.256 22 C -0.236 4.236 23 C -0.110 4.110 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.054 11.131 -5.075 17.890 hybrid contribution 0.427 0.282 1.193 1.298 sum -12.627 11.413 -3.881 17.457 Atomic orbital electron populations 1.20720 0.91279 1.02503 1.01988 1.19668 0.95875 0.92840 1.04553 1.20932 0.93382 0.97304 0.99862 1.19701 0.93733 0.95013 1.02761 1.20722 0.99995 0.93787 1.02028 1.21033 1.00127 0.90508 0.96806 1.20258 0.94036 0.94690 1.05219 1.18060 0.83589 0.83304 0.79152 1.90697 1.29283 1.82909 1.38028 1.48013 1.06714 1.29651 1.49714 1.19336 0.87089 0.87255 0.93396 1.21535 1.24055 1.08304 1.03291 0.92306 1.24942 0.95938 0.94878 0.98250 1.69939 1.30058 1.14775 1.38349 0.86515 0.78059 0.79210 0.83779 1.20567 1.21049 1.19881 1.21000 0.81388 0.98836 0.95553 1.23729 1.01565 0.99554 1.00798 1.22711 0.99985 1.02424 0.98464 1.22826 0.93930 1.00752 0.93539 0.91492 0.91679 0.91781 0.86470 0.91494 0.91868 0.91548 0.85587 0.94951 0.93726 0.92657 0.88557 0.88460 0.91265 0.92587 0.91514 0.91395 0.91707 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.96 36.00 0.36 -0.63 16 2 C -0.13 -1.63 5.75 -104.68 -0.60 -2.23 16 3 C -0.10 -1.21 9.34 -39.49 -0.37 -1.58 16 4 C -0.11 -1.57 5.87 -104.68 -0.61 -2.18 16 5 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 6 C -0.07 -1.13 9.31 -39.18 -0.36 -1.50 16 7 C -0.14 -2.54 4.26 -104.97 -0.45 -2.99 16 8 C 0.57 12.76 5.88 -12.33 -0.07 12.68 16 9 O -0.53 -13.82 16.78 5.32 0.09 -13.74 16 10 N -0.61 -13.32 2.38 -168.58 -0.40 -13.72 16 11 C 0.25 6.55 5.32 -5.19 -0.03 6.53 16 12 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 13 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 16 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.14 2.32 3.27 -67.94 -0.22 2.09 16 21 C -0.20 -3.00 7.72 37.16 0.29 -2.71 16 22 C -0.18 -2.41 8.36 37.16 0.31 -2.10 16 23 C -0.09 -1.38 4.61 -39.19 -0.18 -1.56 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.54 6.84 -51.93 -0.36 0.18 16 26 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 1.64 7.81 -51.93 -0.41 1.23 16 36 H 0.10 1.68 3.97 -62.05 -0.25 1.44 16 37 H 0.07 0.82 3.95 -51.93 -0.21 0.61 16 38 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.71 6.19 -51.93 -0.32 0.39 16 41 H 0.06 0.99 6.81 -51.92 -0.35 0.64 16 42 H 0.17 2.31 1.05 -54.06 -0.06 2.25 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -32.59 328.79 -7.73 -40.31 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.08 Total: 1.85 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.00 Total: -10.67 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.34 Total: -39.42 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.59 -7.73 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.144 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds