Wall clock time and date at job start Mon Mar 30 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38356 * 119.92708 * 2 1 4 4 C 1.38360 * 120.29514 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.93094 * 179.97438 * 4 3 2 6 6 C 1.37959 * 120.14432 * 359.95570 * 4 3 2 7 7 C 1.39577 * 119.85101 * 0.02562 * 6 4 3 8 8 C 1.47847 * 120.14485 * 179.72409 * 7 6 4 9 9 O 1.21549 * 120.00168 * 317.92671 * 8 7 6 10 10 N 1.34780 * 119.99835 * 137.92382 * 8 7 6 11 11 C 1.46498 * 119.99751 * 212.06676 * 10 8 7 12 12 C 1.50703 * 109.47140 * 90.00392 * 11 10 8 13 13 H 1.08003 * 120.00059 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00325 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99768 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46737 * 90.00334 * 16 14 12 18 18 H 1.48506 * 109.47163 * 210.00054 * 16 14 12 19 19 H 1.48496 * 109.47291 * 330.00148 * 16 14 12 20 20 C 1.46494 * 120.00033 * 32.06839 * 10 8 7 21 21 C 1.52998 * 109.47437 * 301.69310 * 20 10 8 22 22 C 1.52998 * 109.47338 * 61.69427 * 20 10 8 23 23 C 1.37957 * 119.92932 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47137 * 89.99831 * 1 2 3 25 25 H 1.09002 * 109.46812 * 210.00421 * 1 2 3 26 26 H 1.09001 * 109.47308 * 329.99577 * 1 2 3 27 27 H 1.08000 * 119.85528 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47171 * 269.97690 * 5 4 3 29 29 H 1.09001 * 109.46849 * 29.98082 * 5 4 3 30 30 H 1.09006 * 109.46795 * 149.97728 * 5 4 3 31 31 H 1.07998 * 120.07798 * 179.97438 * 6 4 3 32 32 H 1.09004 * 109.47232 * 210.00029 * 11 10 8 33 33 H 1.09000 * 109.47740 * 330.00576 * 11 10 8 34 34 H 0.96996 * 119.99984 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.47012 * 181.68876 * 20 10 8 36 36 H 1.08997 * 109.46945 * 13.70219 * 21 20 10 37 37 H 1.09001 * 109.47146 * 133.70280 * 21 20 10 38 38 H 1.09007 * 109.46799 * 253.70593 * 21 20 10 39 39 H 1.09001 * 109.47686 * 103.42447 * 22 20 10 40 40 H 1.08998 * 109.47332 * 223.43288 * 22 20 10 41 41 H 1.09008 * 109.47172 * 343.42755 * 22 20 10 42 42 H 1.07999 * 120.07176 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1991 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.3243 2.5188 -0.0011 6 6 4.2813 0.0194 -0.0001 7 6 3.5911 -1.1938 0.0002 8 6 4.3352 -2.4713 -0.0055 9 8 5.3133 -2.6018 -0.7152 10 7 3.9289 -3.4913 0.7763 11 6 4.9122 -4.4225 1.3351 12 6 5.3806 -3.9145 2.6744 13 1 4.9857 -2.9902 3.0696 14 6 6.3133 -4.6296 3.3952 15 7 6.7946 -5.7549 2.9138 16 14 6.8944 -3.9995 5.0549 17 1 6.0183 -4.5414 6.1244 18 1 8.2929 -4.4405 5.2898 19 1 6.8341 -2.5158 5.0699 20 6 2.5042 -3.6687 1.0672 21 6 1.9597 -2.4066 1.7392 22 6 1.7447 -3.9202 -0.2370 23 6 2.1953 -1.1956 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6537 2.1323 0.0004 28 1 4.5035 2.8344 -1.0289 29 1 3.7295 3.2741 0.5125 30 1 5.2778 2.3959 0.5128 31 1 5.3612 0.0276 -0.0010 32 1 4.4540 -5.4037 1.4588 33 1 5.7633 -4.5015 0.6587 34 1 7.4511 -6.2578 3.4207 35 1 2.3729 -4.5209 1.7341 36 1 2.6787 -1.5954 1.6252 37 1 1.0163 -2.1244 1.2718 38 1 1.7963 -2.6011 2.7992 39 1 1.5042 -4.9802 -0.3189 40 1 0.8237 -3.3373 -0.2393 41 1 2.3654 -3.6222 -1.0821 42 1 1.6553 -2.1309 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:23 Heat of formation + Delta-G solvation = 36.398940 kcal Electronic energy + Delta-G solvation = -22226.856443 eV Core-core repulsion = 19173.961051 eV Total energy + Delta-G solvation = -3052.895392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37281 -39.60577 -38.03622 -35.56068 -34.45023 -33.35167 -32.49336 -29.24019 -28.56654 -28.01193 -27.23754 -25.69786 -23.73325 -23.31508 -21.42070 -19.51737 -18.70040 -18.07667 -17.55927 -17.12818 -16.55990 -16.25141 -15.83125 -15.38554 -15.37922 -14.83586 -14.39603 -14.32898 -14.13365 -13.78320 -13.70059 -13.48776 -13.38767 -13.24238 -13.15537 -12.82478 -12.69603 -12.68945 -12.43165 -12.24960 -12.20101 -12.12787 -11.74131 -11.65218 -11.12725 -10.83561 -10.68519 -9.68111 -9.37541 -9.01540 -8.26060 -6.43326 0.05295 0.47400 1.33573 1.36392 1.46645 1.63843 2.23063 2.38144 2.79145 3.02232 3.56008 3.81080 3.84300 3.93371 4.05852 4.11497 4.28762 4.39926 4.44727 4.48043 4.63357 4.71399 4.76952 4.81956 4.83460 4.92123 4.95092 4.98849 5.00411 5.06767 5.12640 5.14673 5.21152 5.34311 5.43758 5.45509 5.55178 5.60647 5.66342 5.86597 6.01616 6.07628 6.64297 6.71061 7.13506 7.31338 8.80393 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.006027 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.044559 B = 4644.341543 C = 5216.958965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.165 4.165 8 C 0.563 3.437 9 O -0.591 6.591 10 N -0.613 5.613 11 C 0.263 3.737 12 C -0.548 4.548 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.969 3.031 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.272 1.272 20 C 0.125 3.875 21 C -0.193 4.193 22 C -0.172 4.172 23 C -0.092 4.092 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.023 0.977 33 H -0.005 1.005 34 H 0.269 0.731 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.042 0.958 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.469 13.914 -3.653 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.112 4.112 5 C -0.164 4.164 6 C -0.115 4.115 7 C -0.169 4.169 8 C 0.354 3.646 9 O -0.472 6.472 10 N -0.345 5.345 11 C 0.142 3.858 12 C -0.586 4.586 13 H 0.073 0.927 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.197 1.197 20 C 0.022 3.978 21 C -0.249 4.249 22 C -0.229 4.229 23 C -0.109 4.109 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.174 0.826 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.041 0.959 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.061 0.939 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.840 13.655 -3.971 22.041 hybrid contribution 1.555 -0.483 0.793 1.811 sum -15.285 13.172 -3.178 20.426 Atomic orbital electron populations 1.20856 0.87820 1.04288 1.03601 1.20158 0.98138 0.91711 1.01899 1.21427 0.92639 0.99056 0.97492 1.20019 0.94893 0.94710 1.01612 1.20788 0.99752 0.92825 1.03079 1.21031 0.99217 0.91945 0.99346 1.19966 0.95658 0.92285 1.08962 1.18854 0.83177 0.84632 0.77945 1.90637 1.32107 1.83893 1.40606 1.48012 1.08282 1.28904 1.49296 1.18814 0.86784 0.88055 0.92120 1.21735 1.24720 1.08275 1.03918 0.92684 1.25887 0.95758 0.94937 1.02373 1.70065 1.30519 1.15953 1.40062 0.85394 0.77858 0.78511 0.78952 1.18619 1.20452 1.19708 1.21395 0.78756 0.99972 0.97710 1.23669 1.02640 0.97588 1.01044 1.22657 1.00713 1.04149 0.95350 1.22921 0.92085 1.02469 0.93407 0.89804 0.90305 0.89734 0.82555 0.90298 0.89164 0.92462 0.88368 0.95878 0.98682 0.92254 0.89180 0.90521 0.87087 0.92495 0.90260 0.86994 0.93884 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.96 71.24 0.71 -0.60 16 2 C -0.12 -2.50 5.75 -19.90 -0.11 -2.61 16 3 C -0.09 -1.85 9.34 22.33 0.21 -1.65 16 4 C -0.11 -2.98 5.87 -19.90 -0.12 -3.09 16 5 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 6 C -0.10 -3.47 9.31 22.53 0.21 -3.26 16 7 C -0.17 -6.27 4.26 -20.09 -0.09 -6.36 16 8 C 0.56 27.08 5.88 86.79 0.51 27.59 16 9 O -0.59 -33.85 16.78 -3.87 -0.06 -33.91 16 10 N -0.61 -28.53 2.38 -805.54 -1.92 -30.45 16 11 C 0.26 14.98 5.32 85.63 0.46 15.43 16 12 C -0.55 -32.35 9.39 25.60 0.24 -32.11 16 13 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 14 C 0.01 0.57 5.46 84.65 0.46 1.04 16 15 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 16 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 C 0.12 4.21 3.27 44.99 0.15 4.36 16 21 C -0.19 -5.45 7.72 71.98 0.56 -4.89 16 22 C -0.17 -4.39 8.36 71.98 0.60 -3.79 16 23 C -0.09 -2.54 4.61 22.53 0.10 -2.43 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.77 6.84 -2.39 -0.02 0.75 16 26 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 27 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.06 1.23 8.08 -2.38 -0.02 1.21 16 31 H 0.10 3.92 8.06 -2.91 -0.02 3.89 16 32 H 0.02 1.33 7.93 -2.39 -0.02 1.31 16 33 H 0.00 -0.33 7.36 -2.39 -0.02 -0.34 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.09 3.11 7.81 -2.39 -0.02 3.09 16 36 H 0.08 2.60 3.97 -11.90 -0.05 2.55 16 37 H 0.11 2.14 3.95 -2.39 -0.01 2.13 16 38 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.11 1.86 6.19 -2.39 -0.01 1.84 16 41 H 0.04 1.31 6.81 -2.38 -0.02 1.30 16 42 H 0.19 4.41 1.05 -4.39 0.00 4.41 16 Total: -1.00 -78.38 328.79 5.91 -72.47 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.98 Total: 14.99 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 4.60 Total: -13.80 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.63 Total: -87.07 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.06 Total: -33.91 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.38 5.91 -72.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.870 kcal (2) G-P(sol) polarization free energy of solvation -78.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds