Wall clock time and date at job start Mon Mar 30 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38236 * 119.99947 * 2 1 4 4 C 1.38234 * 119.99933 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99959 * 0.24933 * 4 3 2 6 6 C 1.50698 * 119.99992 * 179.72671 * 5 4 3 7 7 C 1.50696 * 109.47149 * 90.00120 * 6 5 4 8 8 O 1.21282 * 120.00423 * 357.72825 * 7 6 5 9 9 N 1.34781 * 120.00111 * 177.72605 * 7 6 5 10 10 C 1.46497 * 119.99950 * 5.30746 * 9 7 6 11 11 C 1.50702 * 109.46968 * 90.00402 * 10 9 7 12 12 H 1.08004 * 119.99900 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00209 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99959 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47013 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46815 * 119.99999 * 15 13 11 18 18 H 1.48498 * 109.47234 * 239.99995 * 15 13 11 19 19 C 1.46500 * 120.00045 * 185.31311 * 9 7 6 20 20 C 1.52997 * 109.47002 * 299.21003 * 19 9 7 21 21 C 1.53002 * 109.47109 * 59.21068 * 19 9 7 22 22 C 1.38239 * 119.99944 * 359.49179 * 5 4 3 23 23 C 1.38227 * 119.99772 * 0.48881 * 22 5 4 24 24 H 1.08998 * 109.46781 * 89.99938 * 1 2 3 25 25 H 1.08998 * 109.47308 * 210.00584 * 1 2 3 26 26 H 1.08999 * 109.47163 * 330.00642 * 1 2 3 27 27 H 1.08002 * 120.00248 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.99916 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47218 * 210.00608 * 6 5 4 30 30 H 1.09001 * 109.47099 * 330.00315 * 6 5 4 31 31 H 1.09000 * 109.47441 * 210.00469 * 10 9 7 32 32 H 1.08997 * 109.47474 * 330.00801 * 10 9 7 33 33 H 0.97002 * 120.00717 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47067 * 179.20729 * 19 9 7 35 35 H 1.08997 * 109.47471 * 66.61799 * 20 19 9 36 36 H 1.09003 * 109.46870 * 186.61607 * 20 19 9 37 37 H 1.08999 * 109.47338 * 306.61294 * 20 19 9 38 38 H 1.08998 * 109.47485 * 53.88732 * 21 19 9 39 39 H 1.09000 * 109.47591 * 173.88999 * 21 19 9 40 40 H 1.08999 * 109.47051 * 293.88713 * 21 19 9 41 41 H 1.08001 * 120.00105 * 180.24869 * 22 5 4 42 42 H 1.07997 * 120.00252 * 179.76850 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 -0.0041 6 6 5.7787 0.0000 -0.0098 7 6 6.2863 -0.0025 1.4091 8 8 5.5025 0.0375 2.3337 9 7 7.6115 -0.0492 1.6507 10 6 8.5618 0.0198 0.5379 11 6 8.9170 1.4595 0.2692 12 1 8.4784 2.2445 0.8674 13 6 9.8019 1.7744 -0.7400 14 7 10.3356 0.8186 -1.4687 15 14 10.2417 3.5591 -1.0734 16 1 9.5115 4.4348 -0.1222 17 1 11.7040 3.7495 -0.8981 18 1 9.8599 3.9115 -2.4645 19 6 8.1015 -0.1692 3.0260 20 6 7.6349 1.0388 3.8408 21 6 7.5509 -1.4512 3.6537 22 6 3.5805 -1.1972 0.0013 23 6 2.1982 -1.1971 0.0011 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 6.1401 -0.8890 -0.5266 30 1 6.1401 0.8909 -0.5234 31 1 9.4639 -0.5351 0.7955 32 1 8.1097 -0.4152 -0.3535 33 1 10.9579 1.0401 -2.1791 34 1 9.1909 -0.2057 3.0217 35 1 6.5502 1.0103 3.9443 36 1 8.0950 1.0104 4.8286 37 1 7.9272 1.9564 3.3302 38 1 7.7912 -2.3010 3.0148 39 1 8.0000 -1.5969 4.6361 40 1 6.4689 -1.3693 3.7575 41 1 4.1205 -2.1325 0.0017 42 1 1.6582 -2.1324 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:24 Heat of formation + Delta-G solvation = -30.278635 kcal Electronic energy + Delta-G solvation = -21490.341379 eV Core-core repulsion = 18434.554630 eV Total energy + Delta-G solvation = -3055.786749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.69788 -38.65617 -35.36920 -33.69793 -32.95126 -31.53705 -30.64060 -29.06459 -26.96502 -26.57965 -25.14796 -22.87865 -22.43553 -21.68358 -20.37021 -18.00819 -16.65041 -15.97220 -15.92958 -15.32195 -15.18361 -14.64581 -14.41388 -14.12056 -13.74779 -13.42869 -13.15513 -12.89832 -12.76606 -12.44446 -12.26601 -12.18603 -11.81580 -11.65155 -11.61467 -11.44030 -11.19424 -10.93281 -10.91181 -10.77141 -10.68842 -10.54848 -10.37851 -10.06321 -9.68608 -8.82536 -8.61905 -8.57297 -8.14080 -7.65223 -6.19001 -4.26349 1.61742 1.71245 3.20753 3.29627 3.33335 3.49457 3.85842 4.18519 4.34773 4.99571 5.01942 5.13858 5.22470 5.28325 5.38136 5.39281 5.59425 5.69970 5.73909 5.76783 5.82493 5.84736 5.91360 6.00596 6.10606 6.18730 6.24617 6.36921 6.37704 6.44192 6.49537 6.68176 6.76946 6.81515 6.83597 6.89970 6.99338 7.18993 7.30995 7.63189 7.77554 8.06170 8.41539 8.81195 9.11015 9.42246 10.87504 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015898 B = 0.005371 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.793079 B = 5211.889599 C = 6211.685571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.121 4.121 4 C -0.101 4.101 5 C -0.052 4.052 6 C -0.103 4.103 7 C 0.523 3.477 8 O -0.562 6.562 9 N -0.594 5.594 10 C 0.236 3.764 11 C -0.536 4.536 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.892 5.892 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.149 3.851 20 C -0.162 4.162 21 C -0.164 4.164 22 C -0.105 4.105 23 C -0.122 4.122 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 -3.054 2.721 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.053 4.053 6 C -0.142 4.142 7 C 0.311 3.689 8 O -0.443 6.443 9 N -0.325 5.325 10 C 0.116 3.884 11 C -0.574 4.574 12 H 0.080 0.920 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C 0.045 3.955 20 C -0.220 4.220 21 C -0.222 4.222 22 C -0.123 4.123 23 C -0.140 4.140 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.096 -3.074 3.047 12.847 hybrid contribution 0.686 1.014 -0.384 1.283 sum -11.410 -2.060 2.663 11.897 Atomic orbital electron populations 1.20734 0.91737 1.02347 1.01815 1.19806 0.95618 0.93369 1.01226 1.20916 0.94105 0.97193 1.01701 1.21011 0.93992 0.97770 0.99088 1.19503 0.94564 0.93228 0.97992 1.20709 0.91389 1.05871 0.96261 1.20201 0.82228 0.76012 0.90436 1.90556 1.56096 1.51797 1.45860 1.48326 1.05994 1.70467 1.07761 1.19466 0.87859 0.97378 0.83736 1.21558 1.26490 0.92511 1.16870 0.92028 1.24939 0.95620 0.97592 0.95650 1.69926 1.30276 1.31978 1.20833 0.86490 0.78317 0.84768 0.78226 1.19678 1.20869 1.20806 1.20799 0.98306 0.94438 0.81926 1.22164 1.03110 0.98235 0.98536 1.22179 1.03058 0.97242 0.99707 1.20953 0.94026 0.97503 0.99837 1.20884 0.94071 0.97156 1.01917 0.91623 0.91916 0.91891 0.86563 0.86197 0.88599 0.87126 0.94792 0.94348 0.92592 0.90052 0.90849 0.93309 0.92495 0.93182 0.92757 0.91016 0.86481 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.10 -1.34 5.88 -104.62 -0.62 -1.96 16 3 C -0.12 -1.73 9.70 -39.58 -0.38 -2.11 16 4 C -0.10 -1.63 9.70 -39.58 -0.38 -2.02 16 5 C -0.05 -0.89 4.37 -104.62 -0.46 -1.35 16 6 C -0.10 -1.88 4.32 -29.04 -0.13 -2.01 16 7 C 0.52 10.72 7.07 -10.99 -0.08 10.64 16 8 O -0.56 -12.29 12.42 5.56 0.07 -12.22 16 9 N -0.59 -12.38 2.41 -167.47 -0.40 -12.78 16 10 C 0.24 5.50 5.00 -5.19 -0.03 5.47 16 11 C -0.54 -13.75 9.39 -34.44 -0.32 -14.07 16 12 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 15 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.15 2.80 3.28 -67.93 -0.22 2.58 16 20 C -0.16 -2.95 9.01 37.16 0.33 -2.61 16 21 C -0.16 -2.72 9.01 37.16 0.33 -2.38 16 22 C -0.11 -1.63 9.70 -39.58 -0.38 -2.02 16 23 C -0.12 -1.69 9.70 -39.59 -0.38 -2.08 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.10 1.65 7.42 -51.93 -0.39 1.27 16 30 H 0.11 2.12 8.04 -51.93 -0.42 1.71 16 31 H 0.03 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.04 0.91 6.38 -51.93 -0.33 0.58 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.08 1.52 7.79 -51.93 -0.40 1.11 16 35 H 0.07 1.43 6.27 -51.93 -0.33 1.11 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.30 6.47 -51.93 -0.34 0.97 16 41 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -28.54 346.11 -8.66 -37.19 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.80 Total: 3.79 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.45 Total: -13.05 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.33 Total: -36.35 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.54 -8.66 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.913 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds