Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38352 * 119.85469 * 2 1 4 4 C 1.37961 * 120.14613 * 179.97438 * 3 2 1 5 5 C 1.39574 * 119.84876 * 0.27851 * 4 3 2 6 6 C 1.47851 * 120.14190 * 179.72388 * 5 4 3 7 7 O 1.21551 * 120.00052 * 135.42261 * 6 5 4 8 8 N 1.34781 * 119.99827 * 315.42060 * 6 5 4 9 9 C 1.46499 * 119.99795 * 186.56552 * 8 6 5 10 10 C 1.50702 * 109.46918 * 90.00241 * 9 8 6 11 11 H 1.08007 * 119.99742 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00010 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00261 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99835 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47107 * 90.00167 * 14 12 10 16 16 H 1.48493 * 109.47366 * 210.00150 * 14 12 10 17 17 H 1.48502 * 109.47584 * 330.00515 * 14 12 10 18 18 C 1.46495 * 120.00080 * 6.57228 * 8 6 5 19 19 C 1.53001 * 109.47416 * 97.47751 * 18 8 6 20 20 C 1.53001 * 109.47153 * 66.92633 * 19 18 8 21 21 C 1.52995 * 109.47270 * 186.92600 * 19 18 8 22 22 C 1.39576 * 119.71308 * 359.46876 * 5 4 3 23 23 C 1.37955 * 119.85071 * 0.51093 * 22 5 4 24 24 H 1.08996 * 109.47745 * 89.99515 * 1 2 3 25 25 H 1.09004 * 109.47224 * 209.99705 * 1 2 3 26 26 H 1.09005 * 109.47059 * 329.99414 * 1 2 3 27 27 H 1.07997 * 119.92873 * 359.96026 * 3 2 1 28 28 H 1.07998 * 120.07374 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47275 * 210.00298 * 9 8 6 30 30 H 1.09000 * 109.47709 * 330.00642 * 9 8 6 31 31 H 0.96998 * 120.00265 * 179.97438 * 13 12 10 32 32 H 1.08992 * 109.47073 * 217.47763 * 18 8 6 33 33 H 1.09001 * 109.47337 * 337.48088 * 18 8 6 34 34 H 1.08997 * 109.47094 * 306.92949 * 19 18 8 35 35 H 1.08994 * 109.47113 * 59.99718 * 20 19 18 36 36 H 1.08995 * 109.47520 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47251 * 300.00212 * 20 19 18 38 38 H 1.09002 * 109.47254 * 60.00284 * 21 19 18 39 39 H 1.09006 * 109.47272 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47347 * 300.00194 * 21 19 18 41 41 H 1.08007 * 120.07381 * 180.22752 * 22 5 4 42 42 H 1.08005 * 119.92211 * 179.74108 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.2761 -0.0001 -0.0048 6 6 5.7546 -0.0001 -0.0104 7 8 6.3652 -0.7516 0.7244 8 7 6.4254 0.8331 -0.8304 9 6 7.8828 0.7345 -0.9425 10 6 8.2377 -0.2299 -2.0448 11 1 7.4558 -0.7199 -2.6061 12 6 9.5605 -0.4858 -2.3375 13 7 10.5125 0.1112 -1.6544 14 14 10.0004 -1.6805 -3.7044 15 1 10.1170 -0.9429 -4.9881 16 1 11.2952 -2.3364 -3.3910 17 1 8.9385 -2.7120 -3.8212 18 6 5.6972 1.8375 -1.6096 19 6 5.7512 3.1834 -0.8841 20 6 7.1906 3.7022 -0.8782 21 6 4.8500 4.1879 -1.6050 22 6 3.5752 -1.2071 0.0006 23 6 2.1957 -1.2000 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6522 2.1331 -0.0006 28 1 4.1117 2.1443 0.0010 29 1 8.2969 1.7164 -1.1714 30 1 8.2963 0.3765 0.0004 31 1 11.4432 -0.0691 -1.8601 32 1 6.1555 1.9364 -2.5935 33 1 4.6584 1.5270 -1.7222 34 1 5.4064 3.0571 0.1422 35 1 7.5354 3.8285 -1.9044 36 1 7.2292 4.6609 -0.3610 37 1 7.8326 2.9866 -0.3647 38 1 3.8246 3.8184 -1.6091 39 1 4.8882 5.1468 -1.0878 40 1 5.1949 4.3142 -2.6312 41 1 4.1116 -2.1445 0.0002 42 1 1.6521 -2.1333 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = -14.267187 kcal Electronic energy + Delta-G solvation = -21774.297891 eV Core-core repulsion = 18719.205451 eV Total energy + Delta-G solvation = -3055.092440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07222 -38.13938 -36.48576 -33.56479 -32.85806 -32.14709 -30.89959 -28.31920 -26.93658 -26.75086 -25.43393 -23.19610 -22.52839 -21.38347 -20.31469 -18.81810 -16.85724 -16.50546 -16.09029 -15.38049 -14.93018 -14.80410 -14.39331 -14.19551 -13.83269 -13.71154 -13.27645 -13.17588 -12.91212 -12.41155 -12.31568 -12.16975 -12.08061 -11.77395 -11.70275 -11.41814 -11.24288 -10.98735 -10.91779 -10.90767 -10.64962 -10.34626 -10.15541 -10.09442 -9.56749 -9.01549 -8.81904 -8.47295 -8.38805 -7.60577 -6.03223 -4.07432 1.18879 1.48961 3.30482 3.35343 3.37788 3.42800 3.83390 4.09537 4.45605 4.80087 4.83632 4.99322 5.05190 5.12100 5.18203 5.29598 5.30876 5.41601 5.46104 5.49044 5.66372 5.73298 5.74772 5.83514 5.89860 6.06244 6.11439 6.12670 6.18486 6.22012 6.32821 6.40123 6.54739 6.59656 6.64760 6.72169 7.01500 7.17327 7.46650 7.57282 7.93554 8.25731 8.42102 8.90171 9.08230 9.57162 11.04623 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.005657 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.462092 B = 4948.337310 C = 5926.731774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.130 4.130 4 C -0.103 4.103 5 C -0.118 4.118 6 C 0.546 3.454 7 O -0.538 6.538 8 N -0.586 5.586 9 C 0.235 3.765 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.104 3.896 19 C -0.118 4.118 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.068 4.068 23 C -0.129 4.129 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.129 0.871 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.839 6.147 0.878 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.122 4.122 6 C 0.333 3.667 7 O -0.417 6.417 8 N -0.316 5.316 9 C 0.116 3.884 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.020 4.020 19 C -0.137 4.137 20 C -0.211 4.211 21 C -0.203 4.203 22 C -0.087 4.087 23 C -0.147 4.147 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.147 0.853 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.260 5.763 1.268 18.241 hybrid contribution 0.377 -0.656 -0.858 1.144 sum -16.883 5.107 0.409 17.643 Atomic orbital electron populations 1.20800 0.91332 1.02652 1.02250 1.20020 0.95941 0.93285 0.98732 1.20925 0.93876 0.97454 1.02596 1.21918 0.94437 0.98324 0.97377 1.20251 0.94454 0.94223 1.03223 1.18255 0.86237 0.81143 0.81059 1.90747 1.69374 1.40768 1.40769 1.48112 1.10107 1.32253 1.41108 1.19594 0.72463 0.98064 0.98283 1.21458 0.91997 1.25754 1.17375 0.92543 1.24908 0.96198 0.96198 0.96691 1.69923 0.99939 1.43049 1.40406 0.86520 0.77903 0.81252 0.81898 1.20649 1.21089 1.19936 1.21815 0.97322 0.87183 0.95706 1.21681 0.96954 0.95459 0.99592 1.22075 0.95895 1.00703 1.02455 1.21816 0.99004 0.98635 1.00869 1.21212 0.93792 0.97625 0.96059 1.20944 0.93810 0.97568 1.02339 0.91179 0.91607 0.91605 0.85934 0.84037 0.93211 0.93850 0.92735 0.90200 0.90469 0.91177 0.92406 0.93593 0.90442 0.92817 0.92662 0.92318 0.85293 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.00 36.00 0.36 -0.56 16 2 C -0.08 -0.92 5.89 -104.54 -0.62 -1.53 16 3 C -0.13 -1.55 9.68 -39.64 -0.38 -1.93 16 4 C -0.10 -1.47 7.39 -39.18 -0.29 -1.76 16 5 C -0.12 -2.09 5.14 -104.97 -0.54 -2.63 16 6 C 0.55 12.16 7.28 -12.32 -0.09 12.07 16 7 O -0.54 -14.28 16.53 5.32 0.09 -14.19 16 8 N -0.59 -12.70 2.42 -176.18 -0.43 -13.12 16 9 C 0.23 6.10 4.44 -5.19 -0.02 6.08 16 10 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 11 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 14 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.10 1.75 4.43 -4.04 -0.02 1.74 16 19 C -0.12 -1.66 2.15 -90.62 -0.19 -1.85 16 20 C -0.15 -2.41 8.20 37.16 0.30 -2.10 16 21 C -0.15 -1.58 9.11 37.16 0.34 -1.24 16 22 C -0.07 -1.09 9.68 -39.19 -0.38 -1.47 16 23 C -0.13 -1.65 9.68 -39.64 -0.38 -2.03 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.14 1.90 3.40 -52.49 -0.18 1.72 16 29 H 0.05 1.27 5.06 -51.93 -0.26 1.01 16 30 H 0.04 1.29 7.34 -51.93 -0.38 0.91 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 32 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 33 H 0.08 1.18 4.98 -51.93 -0.26 0.92 16 34 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.46 5.26 -51.93 -0.27 1.18 16 38 H 0.05 0.51 8.01 -51.93 -0.42 0.10 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.13 2.13 8.06 -52.48 -0.42 1.70 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -32.69 336.69 -8.17 -40.86 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.29 Total: 1.04 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.33 Total: -10.86 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.31 Total: -38.86 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.69 -8.17 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.596 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds