Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38352 * 119.85469 * 2 1 4 4 C 1.37961 * 120.14613 * 179.97438 * 3 2 1 5 5 C 1.39574 * 119.84876 * 0.27851 * 4 3 2 6 6 C 1.47851 * 120.14190 * 179.72388 * 5 4 3 7 7 O 1.21551 * 120.00052 * 135.42261 * 6 5 4 8 8 N 1.34781 * 119.99827 * 315.42060 * 6 5 4 9 9 C 1.46499 * 119.99795 * 186.56552 * 8 6 5 10 10 C 1.50702 * 109.46918 * 90.00241 * 9 8 6 11 11 H 1.08007 * 119.99742 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00010 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00261 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99835 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47107 * 90.00167 * 14 12 10 16 16 H 1.48493 * 109.47366 * 210.00150 * 14 12 10 17 17 H 1.48502 * 109.47584 * 330.00515 * 14 12 10 18 18 C 1.46495 * 120.00080 * 6.57228 * 8 6 5 19 19 C 1.53001 * 109.47416 * 97.47751 * 18 8 6 20 20 C 1.53001 * 109.47153 * 66.92633 * 19 18 8 21 21 C 1.52995 * 109.47270 * 186.92600 * 19 18 8 22 22 C 1.39576 * 119.71308 * 359.46876 * 5 4 3 23 23 C 1.37955 * 119.85071 * 0.51093 * 22 5 4 24 24 H 1.08996 * 109.47745 * 89.99515 * 1 2 3 25 25 H 1.09004 * 109.47224 * 209.99705 * 1 2 3 26 26 H 1.09005 * 109.47059 * 329.99414 * 1 2 3 27 27 H 1.07997 * 119.92873 * 359.96026 * 3 2 1 28 28 H 1.07998 * 120.07374 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47275 * 210.00298 * 9 8 6 30 30 H 1.09000 * 109.47709 * 330.00642 * 9 8 6 31 31 H 0.96998 * 120.00265 * 179.97438 * 13 12 10 32 32 H 1.08992 * 109.47073 * 217.47763 * 18 8 6 33 33 H 1.09001 * 109.47337 * 337.48088 * 18 8 6 34 34 H 1.08997 * 109.47094 * 306.92949 * 19 18 8 35 35 H 1.08994 * 109.47113 * 59.99718 * 20 19 18 36 36 H 1.08995 * 109.47520 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47251 * 300.00212 * 20 19 18 38 38 H 1.09002 * 109.47254 * 60.00284 * 21 19 18 39 39 H 1.09006 * 109.47272 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47347 * 300.00194 * 21 19 18 41 41 H 1.08007 * 120.07381 * 180.22752 * 22 5 4 42 42 H 1.08005 * 119.92211 * 179.74108 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.2761 -0.0001 -0.0048 6 6 5.7546 -0.0001 -0.0104 7 8 6.3652 -0.7516 0.7244 8 7 6.4254 0.8331 -0.8304 9 6 7.8828 0.7345 -0.9425 10 6 8.2377 -0.2299 -2.0448 11 1 7.4558 -0.7199 -2.6061 12 6 9.5605 -0.4858 -2.3375 13 7 10.5125 0.1112 -1.6544 14 14 10.0004 -1.6805 -3.7044 15 1 10.1170 -0.9429 -4.9881 16 1 11.2952 -2.3364 -3.3910 17 1 8.9385 -2.7120 -3.8212 18 6 5.6972 1.8375 -1.6096 19 6 5.7512 3.1834 -0.8841 20 6 7.1906 3.7022 -0.8782 21 6 4.8500 4.1879 -1.6050 22 6 3.5752 -1.2071 0.0006 23 6 2.1957 -1.2000 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6522 2.1331 -0.0006 28 1 4.1117 2.1443 0.0010 29 1 8.2969 1.7164 -1.1714 30 1 8.2963 0.3765 0.0004 31 1 11.4432 -0.0691 -1.8601 32 1 6.1555 1.9364 -2.5935 33 1 4.6584 1.5270 -1.7222 34 1 5.4064 3.0571 0.1422 35 1 7.5354 3.8285 -1.9044 36 1 7.2292 4.6609 -0.3610 37 1 7.8326 2.9866 -0.3647 38 1 3.8246 3.8184 -1.6091 39 1 4.8882 5.1468 -1.0878 40 1 5.1949 4.3142 -2.6312 41 1 4.1116 -2.1445 0.0002 42 1 1.6521 -2.1333 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -33.419436 kcal Electronic energy + Delta-G solvation = -21775.128395 eV Core-core repulsion = 18719.205451 eV Total energy + Delta-G solvation = -3055.922944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50474 -39.44600 -38.02110 -35.43022 -34.26598 -33.67501 -31.99505 -30.01777 -28.08484 -28.00345 -26.94447 -25.00728 -23.61784 -22.67486 -21.59748 -20.26494 -18.72215 -18.30726 -17.61050 -16.68779 -16.52860 -16.22733 -15.87169 -15.61753 -15.02777 -14.74520 -14.48501 -14.42467 -14.32167 -14.03525 -13.65760 -13.51690 -13.10723 -12.99365 -12.92957 -12.89079 -12.74226 -12.56367 -12.44145 -12.20569 -12.07057 -11.96393 -11.81288 -11.54413 -11.41284 -10.76113 -10.61788 -9.89387 -9.61020 -9.40282 -8.24178 -6.38895 0.03344 0.42893 1.33302 1.36499 1.46699 1.80618 2.26162 2.40775 2.81768 3.04735 3.57072 3.86048 3.89431 3.97588 4.03100 4.06055 4.22618 4.44706 4.47718 4.58807 4.61908 4.76239 4.81841 4.85904 4.90552 4.94014 4.98874 5.05265 5.11613 5.12169 5.19397 5.28423 5.29686 5.38250 5.41258 5.49352 5.52768 5.56265 5.63829 5.83291 6.01810 6.05911 6.65652 6.71861 7.22432 7.38560 8.82636 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.005657 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.462092 B = 4948.337310 C = 5926.731774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.066 4.066 3 C -0.121 4.121 4 C -0.101 4.101 5 C -0.150 4.150 6 C 0.536 3.464 7 O -0.601 6.601 8 N -0.588 5.588 9 C 0.251 3.749 10 C -0.548 4.548 11 H 0.048 0.952 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.967 3.033 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.276 1.276 18 C 0.101 3.899 19 C -0.110 4.110 20 C -0.153 4.153 21 C -0.137 4.137 22 C -0.089 4.089 23 C -0.126 4.126 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.164 0.836 28 H 0.150 0.850 29 H 0.053 0.947 30 H -0.009 1.009 31 H 0.268 0.732 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.687 7.607 -0.476 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.153 4.153 6 C 0.326 3.674 7 O -0.484 6.484 8 N -0.317 5.317 9 C 0.130 3.870 10 C -0.586 4.586 11 H 0.066 0.934 12 C -0.188 4.188 13 N -0.565 5.565 14 Si 0.791 3.209 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.201 1.201 18 C -0.021 4.021 19 C -0.129 4.129 20 C -0.210 4.210 21 C -0.195 4.195 22 C -0.108 4.108 23 C -0.144 4.144 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.181 0.819 28 H 0.167 0.833 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.144 7.267 -0.113 22.358 hybrid contribution 1.488 -1.095 -0.384 1.887 sum -19.656 6.171 -0.498 20.608 Atomic orbital electron populations 1.20903 0.88089 1.04234 1.03669 1.20536 0.98150 0.92393 0.95577 1.21364 0.92582 0.99407 1.00497 1.21997 0.95753 0.96978 0.97183 1.19928 0.91149 0.96531 1.07711 1.19135 0.88560 0.79834 0.79854 1.90683 1.71244 1.43217 1.43294 1.48110 1.08656 1.33412 1.41501 1.19104 0.75457 0.97409 0.94997 1.21714 0.92338 1.26563 1.18019 0.93404 1.25815 0.95954 0.97867 0.99199 1.70042 1.00389 1.44231 1.41827 0.85435 0.77470 0.78785 0.79244 1.18585 1.20399 1.20064 1.22118 0.97628 0.87487 0.94880 1.21629 0.96781 0.94624 0.99875 1.22020 0.96306 1.00807 1.01854 1.21772 0.99036 0.98147 1.00536 1.21212 0.95514 0.96336 0.97783 1.21223 0.92143 0.99716 1.01319 0.89595 0.90528 0.89693 0.81854 0.83320 0.92966 0.99039 0.92330 0.91256 0.88215 0.91046 0.92829 0.91062 0.94718 0.90621 0.90829 0.92125 0.87500 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.00 71.24 0.71 -0.48 16 2 C -0.07 -1.25 5.89 -19.81 -0.12 -1.36 16 3 C -0.12 -2.34 9.68 22.23 0.22 -2.12 16 4 C -0.10 -2.71 7.39 22.53 0.17 -2.54 16 5 C -0.15 -5.45 5.14 -20.09 -0.10 -5.55 16 6 C 0.54 25.68 7.28 86.79 0.63 26.31 16 7 O -0.60 -35.03 16.53 -3.88 -0.06 -35.09 16 8 N -0.59 -27.20 2.42 -829.57 -2.01 -29.21 16 9 C 0.25 14.13 4.44 85.63 0.38 14.51 16 10 C -0.55 -32.91 9.39 25.60 0.24 -32.67 16 11 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 12 C 0.01 0.64 5.46 84.66 0.46 1.10 16 13 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 14 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 15 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 C 0.10 3.45 4.43 86.38 0.38 3.83 16 19 C -0.11 -3.01 2.15 -10.79 -0.02 -3.03 16 20 C -0.15 -4.84 8.20 71.98 0.59 -4.25 16 21 C -0.14 -2.50 9.11 71.98 0.66 -1.84 16 22 C -0.09 -2.95 9.68 22.53 0.22 -2.73 16 23 C -0.13 -2.96 9.68 22.23 0.22 -2.75 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 0.70 8.08 -2.38 -0.02 0.68 16 26 H 0.08 0.65 8.08 -2.38 -0.02 0.63 16 27 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.15 3.67 3.40 -2.91 -0.01 3.66 16 29 H 0.05 2.89 5.06 -2.39 -0.01 2.88 16 30 H -0.01 -0.56 7.34 -2.39 -0.02 -0.58 16 31 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 33 H 0.10 2.95 4.98 -2.39 -0.01 2.94 16 34 H 0.07 1.96 6.34 -2.39 -0.02 1.95 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 1.38 5.26 -2.39 -0.01 1.37 16 38 H 0.07 1.08 8.01 -2.39 -0.02 1.06 16 39 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 3.86 8.06 -2.91 -0.02 3.83 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -78.53 336.69 5.87 -72.66 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.00 Total: 13.82 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.63 Total: -13.56 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.72 Total: -85.95 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.06 Total: -35.09 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.53 5.87 -72.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.244 kcal (2) G-P(sol) polarization free energy of solvation -78.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds