Wall clock time and date at job start Mon Mar 30 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37976 * 120.07255 * 2 1 4 4 C 1.38332 * 120.14498 * 180.02562 * 3 2 1 5 5 C 1.38381 * 120.29152 * 0.02562 * 4 3 2 6 6 C 1.37932 * 120.14736 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.07366 * 180.32398 * 2 1 3 8 8 C 1.47849 * 120.14441 * 359.97327 * 7 2 1 9 9 O 1.21549 * 119.99718 * 54.42029 * 8 7 2 10 10 N 1.34772 * 119.99903 * 234.41800 * 8 7 2 11 11 C 1.46498 * 119.99807 * 185.83248 * 10 8 7 12 12 C 1.50700 * 109.47569 * 89.99926 * 11 10 8 13 13 H 1.07998 * 119.99768 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00163 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99791 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46837 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46894 * 119.99855 * 16 14 12 19 19 H 1.48496 * 109.47064 * 240.00251 * 16 14 12 20 20 C 1.46499 * 120.00170 * 5.82799 * 10 8 7 21 21 C 1.52999 * 109.46933 * 83.79172 * 20 10 8 22 22 C 1.52997 * 109.47300 * 64.99950 * 21 20 10 23 23 C 1.53000 * 109.47124 * 184.99710 * 21 20 10 24 24 H 1.08998 * 109.47188 * 85.63679 * 1 2 3 25 25 H 1.09007 * 109.46825 * 205.63619 * 1 2 3 26 26 H 1.09000 * 109.46952 * 325.62724 * 1 2 3 27 27 H 1.08001 * 119.92867 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.85668 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.92737 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.07502 * 180.02562 * 6 5 4 31 31 H 1.09009 * 109.47329 * 210.00283 * 11 10 8 32 32 H 1.09005 * 109.47071 * 329.99552 * 11 10 8 33 33 H 0.97003 * 119.99849 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46929 * 203.79090 * 20 10 8 35 35 H 1.09001 * 109.47085 * 323.79340 * 20 10 8 36 36 H 1.08997 * 109.47173 * 305.00306 * 21 20 10 37 37 H 1.08994 * 109.47821 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47622 * 300.00412 * 22 21 20 39 39 H 1.09007 * 109.47218 * 59.99848 * 22 21 20 40 40 H 1.09005 * 109.46739 * 60.00049 * 23 21 20 41 41 H 1.08996 * 109.47199 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.47582 * 300.00345 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0018 -0.0016 6 6 3.6023 -1.1988 -0.0027 7 6 2.2064 -1.2077 -0.0068 8 6 1.4720 -2.4909 -0.0135 9 8 0.6383 -2.7095 -0.8705 10 7 1.7272 -3.4182 0.9306 11 6 1.0949 -4.7374 0.8514 12 6 1.9741 -5.6689 0.0574 13 1 2.9103 -5.3140 -0.3473 14 6 1.5836 -6.9747 -0.1514 15 7 0.4442 -7.4073 0.3427 16 14 2.6730 -8.1292 -1.1362 17 1 3.8911 -7.4038 -1.5779 18 1 3.0650 -9.2835 -0.2882 19 1 1.9291 -8.6181 -2.3248 20 6 2.6367 -3.1071 2.0361 21 6 1.8691 -2.3720 3.1367 22 6 0.8127 -3.3050 3.7320 23 6 2.8424 -1.9374 4.2343 24 1 -0.3633 0.0782 -1.0247 25 1 -0.3633 -0.9266 0.4447 26 1 -0.3633 0.8482 0.5802 27 1 1.6585 2.1294 0.0004 28 1 4.1183 2.1332 -0.0001 29 1 5.3612 0.0100 -0.0016 30 1 4.1494 -2.1300 -0.0031 31 1 0.9580 -5.1357 1.8568 32 1 0.1255 -4.6468 0.3614 33 1 0.1693 -8.3259 0.1955 34 1 3.0505 -4.0322 2.4375 35 1 3.4466 -2.4742 1.6731 36 1 1.3813 -1.4933 2.7147 37 1 0.2661 -2.7816 4.5164 38 1 0.1193 -3.6148 2.9501 39 1 1.3004 -4.1838 4.1540 40 1 3.5950 -1.2726 3.8101 41 1 2.2956 -1.4133 5.0181 42 1 3.3301 -2.8160 4.6562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:30 Heat of formation + Delta-G solvation = -25.412359 kcal Electronic energy + Delta-G solvation = -22131.892899 eV Core-core repulsion = 19076.317167 eV Total energy + Delta-G solvation = -3055.575731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05724 -37.98627 -36.29046 -33.61655 -32.60716 -32.31834 -31.00672 -27.72133 -26.82593 -26.78955 -25.49936 -23.75184 -22.29935 -21.21074 -20.17778 -18.67888 -16.70186 -16.51316 -15.88734 -15.54602 -15.31231 -14.62990 -14.45675 -14.08571 -13.80643 -13.55545 -13.13931 -13.04874 -12.83453 -12.41915 -12.21563 -12.01899 -11.92261 -11.89559 -11.55538 -11.30254 -11.28942 -11.01452 -10.96168 -10.86061 -10.60435 -10.47794 -10.28312 -10.11955 -9.57360 -9.00647 -8.69410 -8.54132 -8.42097 -7.60146 -6.04303 -4.09004 1.25505 1.46074 3.29476 3.35401 3.38060 3.42353 3.84944 4.03706 4.44929 4.90956 4.94857 5.00551 5.09605 5.17736 5.22794 5.30173 5.36677 5.44569 5.58175 5.76116 5.77699 5.86590 5.89180 5.92560 5.95901 6.03654 6.13036 6.19139 6.22527 6.34407 6.34909 6.47580 6.52722 6.60290 6.68591 6.70822 7.01775 7.13051 7.45735 7.57109 7.92659 8.24076 8.42598 8.89308 9.08091 9.56169 11.03534 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.006046 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.835657 B = 4630.127515 C = 5107.515741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.128 4.128 4 C -0.109 4.109 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.109 4.109 8 C 0.550 3.450 9 O -0.534 6.534 10 N -0.587 5.587 11 C 0.244 3.756 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.108 3.892 21 C -0.112 4.112 22 C -0.146 4.146 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 15.771 5.782 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.046 4.046 3 C -0.146 4.146 4 C -0.127 4.127 5 C -0.150 4.150 6 C -0.106 4.106 7 C -0.113 4.113 8 C 0.336 3.664 9 O -0.412 6.412 10 N -0.317 5.317 11 C 0.125 3.875 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.016 4.016 21 C -0.132 4.132 22 C -0.203 4.203 23 C -0.199 4.199 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.181 15.432 5.350 17.136 hybrid contribution 0.711 -0.767 -0.531 1.173 sum 5.893 14.666 4.819 16.523 Atomic orbital electron populations 1.20828 0.90744 1.02763 1.02861 1.19917 0.96315 0.91701 0.96619 1.20917 0.94242 0.97158 1.02332 1.21173 0.94177 0.97928 0.99429 1.21020 0.99791 0.92232 1.01995 1.21289 0.93009 0.98590 0.97682 1.20159 0.94024 0.94067 1.03008 1.18155 0.82770 0.83123 0.82306 1.90754 1.33749 1.79334 1.37394 1.48145 1.45371 1.15104 1.23063 1.19380 0.94254 0.76131 0.97729 1.21491 1.05917 0.95293 1.33890 0.92472 1.24920 0.95247 0.98053 0.95801 1.69940 1.21092 1.16873 1.45357 0.86467 0.80568 0.80607 0.79935 1.19823 1.20960 1.20875 1.21748 0.92200 1.00504 0.87188 1.21547 0.96913 0.98714 0.95981 1.21862 0.98853 0.99004 1.00588 1.21752 0.99003 1.01017 0.98157 0.90531 0.91007 0.91868 0.85949 0.86176 0.85912 0.85297 0.94402 0.93871 0.92781 0.89916 0.91032 0.91631 0.93619 0.91674 0.92574 0.92929 0.92926 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.24 36.01 0.33 -1.35 16 2 C -0.04 -0.68 5.91 -104.22 -0.62 -1.29 16 3 C -0.13 -1.57 9.71 -39.64 -0.38 -1.96 16 4 C -0.11 -1.22 10.04 -39.49 -0.40 -1.61 16 5 C -0.13 -1.60 10.03 -39.64 -0.40 -1.99 16 6 C -0.09 -1.31 7.62 -39.19 -0.30 -1.61 16 7 C -0.11 -1.90 4.80 -104.97 -0.50 -2.40 16 8 C 0.55 11.93 6.00 -12.33 -0.07 11.85 16 9 O -0.53 -13.76 15.55 5.32 0.08 -13.68 16 10 N -0.59 -12.52 2.18 -176.17 -0.38 -12.90 16 11 C 0.24 6.32 4.29 -5.19 -0.02 6.30 16 12 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 16 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.11 1.82 4.59 -4.04 -0.02 1.80 16 21 C -0.11 -1.64 3.07 -90.62 -0.28 -1.91 16 22 C -0.15 -2.25 8.35 37.16 0.31 -1.94 16 23 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.07 1.22 6.63 -51.93 -0.34 0.88 16 26 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 27 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.13 1.93 7.29 -52.49 -0.38 1.55 16 31 H 0.04 0.98 6.70 -51.92 -0.35 0.64 16 32 H 0.04 1.27 7.35 -51.93 -0.38 0.89 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 35 H 0.07 1.09 4.49 -51.93 -0.23 0.86 16 36 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.18 6.38 -51.93 -0.33 0.85 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -32.17 341.64 -8.49 -40.66 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.62 Total: 0.62 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.43 Total: -10.97 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.35 Total: -38.63 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.17 -8.49 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.245 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds