Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37976 * 120.07255 * 2 1 4 4 C 1.38332 * 120.14498 * 180.02562 * 3 2 1 5 5 C 1.38381 * 120.29152 * 0.02562 * 4 3 2 6 6 C 1.37932 * 120.14736 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.07366 * 180.32398 * 2 1 3 8 8 C 1.47849 * 120.14441 * 359.97327 * 7 2 1 9 9 O 1.21549 * 119.99718 * 54.42029 * 8 7 2 10 10 N 1.34772 * 119.99903 * 234.41800 * 8 7 2 11 11 C 1.46498 * 119.99807 * 185.83248 * 10 8 7 12 12 C 1.50700 * 109.47569 * 89.99926 * 11 10 8 13 13 H 1.07998 * 119.99768 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00163 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99791 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46837 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46894 * 119.99855 * 16 14 12 19 19 H 1.48496 * 109.47064 * 240.00251 * 16 14 12 20 20 C 1.46499 * 120.00170 * 5.82799 * 10 8 7 21 21 C 1.52999 * 109.46933 * 83.79172 * 20 10 8 22 22 C 1.52997 * 109.47300 * 64.99950 * 21 20 10 23 23 C 1.53000 * 109.47124 * 184.99710 * 21 20 10 24 24 H 1.08998 * 109.47188 * 85.63679 * 1 2 3 25 25 H 1.09007 * 109.46825 * 205.63619 * 1 2 3 26 26 H 1.09000 * 109.46952 * 325.62724 * 1 2 3 27 27 H 1.08001 * 119.92867 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.85668 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.92737 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.07502 * 180.02562 * 6 5 4 31 31 H 1.09009 * 109.47329 * 210.00283 * 11 10 8 32 32 H 1.09005 * 109.47071 * 329.99552 * 11 10 8 33 33 H 0.97003 * 119.99849 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46929 * 203.79090 * 20 10 8 35 35 H 1.09001 * 109.47085 * 323.79340 * 20 10 8 36 36 H 1.08997 * 109.47173 * 305.00306 * 21 20 10 37 37 H 1.08994 * 109.47821 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47622 * 300.00412 * 22 21 20 39 39 H 1.09007 * 109.47218 * 59.99848 * 22 21 20 40 40 H 1.09005 * 109.46739 * 60.00049 * 23 21 20 41 41 H 1.08996 * 109.47199 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.47582 * 300.00345 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0018 -0.0016 6 6 3.6023 -1.1988 -0.0027 7 6 2.2064 -1.2077 -0.0068 8 6 1.4720 -2.4909 -0.0135 9 8 0.6383 -2.7095 -0.8705 10 7 1.7272 -3.4182 0.9306 11 6 1.0949 -4.7374 0.8514 12 6 1.9741 -5.6689 0.0574 13 1 2.9103 -5.3140 -0.3473 14 6 1.5836 -6.9747 -0.1514 15 7 0.4442 -7.4073 0.3427 16 14 2.6730 -8.1292 -1.1362 17 1 3.8911 -7.4038 -1.5779 18 1 3.0650 -9.2835 -0.2882 19 1 1.9291 -8.6181 -2.3248 20 6 2.6367 -3.1071 2.0361 21 6 1.8691 -2.3720 3.1367 22 6 0.8127 -3.3050 3.7320 23 6 2.8424 -1.9374 4.2343 24 1 -0.3633 0.0782 -1.0247 25 1 -0.3633 -0.9266 0.4447 26 1 -0.3633 0.8482 0.5802 27 1 1.6585 2.1294 0.0004 28 1 4.1183 2.1332 -0.0001 29 1 5.3612 0.0100 -0.0016 30 1 4.1494 -2.1300 -0.0031 31 1 0.9580 -5.1357 1.8568 32 1 0.1255 -4.6468 0.3614 33 1 0.1693 -8.3259 0.1955 34 1 3.0505 -4.0322 2.4375 35 1 3.4466 -2.4742 1.6731 36 1 1.3813 -1.4933 2.7147 37 1 0.2661 -2.7816 4.5164 38 1 0.1193 -3.6148 2.9501 39 1 1.3004 -4.1838 4.1540 40 1 3.5950 -1.2726 3.8101 41 1 2.2956 -1.4133 5.0181 42 1 3.3301 -2.8160 4.6562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -43.568833 kcal Electronic energy + Delta-G solvation = -22132.680222 eV Core-core repulsion = 19076.317167 eV Total energy + Delta-G solvation = -3056.363055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47093 -39.30608 -37.81930 -35.44579 -34.23208 -33.63538 -32.27177 -29.57231 -28.01040 -27.97935 -26.97763 -25.48325 -23.71007 -22.42294 -21.47611 -20.10998 -18.69157 -18.10456 -17.48509 -16.84446 -16.61330 -16.31340 -15.90948 -15.47996 -15.09752 -14.74916 -14.50924 -14.41279 -14.13567 -14.02313 -13.72283 -13.48553 -13.19812 -13.13952 -12.99839 -12.91636 -12.73849 -12.53068 -12.40987 -12.22462 -12.15964 -11.92371 -11.85850 -11.60649 -11.55222 -10.67721 -10.66408 -9.83845 -9.61049 -9.37709 -8.24458 -6.39932 0.13565 0.43794 1.33831 1.36347 1.48194 1.83690 2.26730 2.42206 2.83664 3.04575 3.60826 3.90056 3.92231 3.94973 4.02650 4.19429 4.21183 4.40399 4.55858 4.60054 4.65052 4.69208 4.74961 4.77766 4.82529 4.87863 4.98136 5.00714 5.04265 5.08140 5.19746 5.24235 5.24546 5.39896 5.45303 5.46840 5.55235 5.56834 5.61485 5.84931 6.04584 6.04974 6.66612 6.74049 7.23683 7.41050 8.82609 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.006046 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.835657 B = 4630.127515 C = 5107.515741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.060 4.060 3 C -0.121 4.121 4 C -0.092 4.092 5 C -0.122 4.122 6 C -0.100 4.100 7 C -0.138 4.138 8 C 0.545 3.455 9 O -0.594 6.594 10 N -0.590 5.590 11 C 0.264 3.736 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.281 1.281 20 C 0.105 3.895 21 C -0.104 4.104 22 C -0.143 4.143 23 C -0.133 4.133 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.120 0.880 31 H 0.030 0.970 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 18.594 6.529 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.139 4.139 6 C -0.119 4.119 7 C -0.141 4.141 8 C 0.334 3.666 9 O -0.476 6.476 10 N -0.318 5.318 11 C 0.143 3.857 12 C -0.584 4.584 13 H 0.070 0.930 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.207 1.207 20 C -0.017 4.017 21 C -0.124 4.124 22 C -0.201 4.201 23 C -0.190 4.190 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.116 0.884 27 H 0.173 0.827 28 H 0.182 0.818 29 H 0.174 0.826 30 H 0.138 0.862 31 H 0.048 0.952 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.278 18.278 6.140 20.984 hybrid contribution -0.262 -1.555 -0.753 1.747 sum 8.016 16.724 5.387 19.312 Atomic orbital electron populations 1.20783 0.91264 1.02182 1.02607 1.20068 0.96301 0.92194 0.97533 1.21282 0.95108 0.96865 1.00587 1.21698 0.93746 0.99270 0.96261 1.21390 1.01446 0.91117 0.99996 1.21305 0.91819 0.99919 0.98824 1.19848 0.94941 0.92109 1.07201 1.18975 0.82087 0.84557 0.80999 1.90693 1.36513 1.80805 1.39565 1.48110 1.45613 1.13569 1.24538 1.18797 0.92192 0.78488 0.96223 1.21754 1.05992 0.96193 1.34491 0.92967 1.25856 0.96671 0.99762 0.96713 1.70063 1.22706 1.17543 1.46352 0.85366 0.78622 0.78506 0.78314 1.19110 1.19193 1.20721 1.22013 0.92342 1.00802 0.86573 1.21476 0.97067 0.97682 0.96129 1.21828 0.98693 0.99556 0.99995 1.21691 0.98519 1.01646 0.97173 0.91343 0.94844 0.88398 0.82678 0.81833 0.82550 0.86208 0.95184 0.98910 0.92359 0.90845 0.88735 0.92219 0.91194 0.95680 0.92809 0.91407 0.91256 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.33 9.24 71.24 0.66 -2.68 16 2 C -0.06 -1.77 5.91 -19.61 -0.12 -1.89 16 3 C -0.12 -2.46 9.71 22.23 0.22 -2.24 16 4 C -0.09 -1.54 10.04 22.33 0.22 -1.32 16 5 C -0.12 -2.41 10.03 22.23 0.22 -2.18 16 6 C -0.10 -2.87 7.62 22.52 0.17 -2.69 16 7 C -0.14 -4.85 4.80 -20.09 -0.10 -4.95 16 8 C 0.54 25.34 6.00 86.79 0.52 25.86 16 9 O -0.59 -33.46 15.55 -3.87 -0.06 -33.53 16 10 N -0.59 -27.01 2.18 -829.57 -1.81 -28.82 16 11 C 0.26 14.86 4.29 85.63 0.37 15.23 16 12 C -0.55 -32.48 9.39 25.60 0.24 -32.24 16 13 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 14 C 0.01 0.53 5.46 84.66 0.46 1.00 16 15 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 16 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 C 0.10 3.66 4.59 86.38 0.40 4.05 16 21 C -0.10 -3.03 3.07 -10.79 -0.03 -3.06 16 22 C -0.14 -4.61 8.35 71.98 0.60 -4.00 16 23 C -0.13 -2.75 9.19 71.98 0.66 -2.08 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.03 1.23 6.63 -2.38 -0.02 1.21 16 26 H 0.10 2.12 8.11 -2.39 -0.02 2.10 16 27 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 29 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 30 H 0.12 3.55 7.29 -2.91 -0.02 3.53 16 31 H 0.03 1.71 6.70 -2.38 -0.02 1.69 16 32 H -0.01 -0.47 7.35 -2.38 -0.02 -0.49 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.07 2.66 8.02 -2.39 -0.02 2.64 16 35 H 0.09 2.85 4.49 -2.39 -0.01 2.84 16 36 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.02 0.98 6.38 -2.39 -0.02 0.96 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.97 341.64 5.93 -71.05 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.99 Total: 13.59 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.50 Total: -13.20 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.52 Total: -85.74 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.06 Total: -33.53 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.97 5.93 -71.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.476 kcal (2) G-P(sol) polarization free energy of solvation -76.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds