Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.21284 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00199 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47105 * 90.00524 * 11 10 8 13 13 H 1.08003 * 119.99562 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00337 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99845 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99950 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47081 * 89.99978 * 16 14 12 18 18 H 1.48501 * 109.47010 * 210.00421 * 16 14 12 19 19 H 1.48504 * 109.47120 * 330.00441 * 16 14 12 20 20 C 1.46505 * 119.99970 * 0.02562 * 10 8 7 21 21 C 1.52991 * 109.47359 * 119.99396 * 20 10 8 22 22 C 1.52999 * 109.46700 * 239.99678 * 20 10 8 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 1.08997 * 109.47534 * 210.00678 * 11 10 8 33 33 H 1.08996 * 109.47366 * 330.00761 * 11 10 8 34 34 H 0.96997 * 119.99659 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46741 * 359.97438 * 20 10 8 36 36 H 1.09001 * 109.47460 * 60.00114 * 21 20 10 37 37 H 1.09000 * 109.47067 * 180.02562 * 21 20 10 38 38 H 1.09001 * 109.47094 * 299.99823 * 21 20 10 39 39 H 1.08996 * 109.47543 * 59.99957 * 22 20 10 40 40 H 1.09005 * 109.47064 * 179.97438 * 22 20 10 41 41 H 1.09001 * 109.47027 * 299.99217 * 22 20 10 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1916 -2.2543 -2.3432 10 7 5.2482 -4.0844 -1.6677 11 6 5.4918 -4.5075 -3.0489 12 6 6.8056 -3.9418 -3.5233 13 1 7.3998 -3.3287 -2.8618 14 6 7.2495 -4.2076 -4.8013 15 7 6.5262 -4.9546 -5.6065 16 14 8.8784 -3.5069 -5.3889 17 1 9.9702 -4.4640 -5.0775 18 1 8.8202 -3.2822 -6.8557 19 1 9.1396 -2.2172 -4.7006 20 6 5.7241 -4.9090 -0.5542 21 6 5.0824 -6.2954 -0.6356 22 6 7.2459 -5.0457 -0.6351 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 5.5273 -5.5960 -3.0947 33 1 4.6875 -4.1431 -3.6879 34 1 6.8384 -5.1413 -6.5057 35 1 5.4516 -4.4370 0.3897 36 1 5.3552 -6.7673 -1.5796 37 1 5.4362 -6.9087 0.1931 38 1 3.9983 -6.1980 -0.5780 39 1 7.7030 -4.0580 -0.5771 40 1 7.6001 -5.6588 0.1936 41 1 7.5186 -5.5175 -1.5791 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052135922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -26.317579 kcal Electronic energy + Delta-G solvation = -21415.304329 eV Core-core repulsion = 18359.689344 eV Total energy + Delta-G solvation = -3055.614984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.71308 -38.58600 -35.90307 -33.35827 -32.74233 -31.80396 -30.78659 -28.48036 -26.92048 -26.71964 -26.25672 -22.96040 -21.94193 -21.33049 -20.45254 -17.93019 -16.62864 -16.42823 -16.30927 -15.46771 -15.18417 -14.58600 -14.19830 -14.11148 -13.70000 -13.46635 -13.17441 -13.01354 -12.73615 -12.71431 -12.32494 -12.18882 -11.83602 -11.63660 -11.56924 -11.49369 -11.19046 -10.94149 -10.90284 -10.79517 -10.77503 -10.50628 -10.34969 -9.98669 -9.50896 -8.95256 -8.54617 -8.39477 -8.33261 -7.59746 -6.00378 -4.03365 1.54460 1.59950 3.31177 3.38303 3.41543 3.50400 3.80778 4.13783 4.47915 4.84746 4.93040 5.04042 5.20923 5.27123 5.31043 5.35121 5.38752 5.46353 5.59861 5.61438 5.66260 5.70367 5.72365 5.81810 5.86079 6.02109 6.16058 6.22659 6.28571 6.30814 6.38101 6.61393 6.64337 6.72301 6.83132 6.97461 7.14323 7.22486 7.51476 7.62335 7.96916 8.29470 8.50098 8.95919 9.17215 9.60703 11.07814 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.004913 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.530349 B = 5697.967900 C = 6338.336357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.050 4.050 7 C -0.106 4.106 8 C 0.506 3.494 9 O -0.533 6.533 10 N -0.595 5.595 11 C 0.246 3.754 12 C -0.517 4.517 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.132 3.868 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.107 4.107 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 4.463 15.473 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.050 4.050 7 C -0.147 4.147 8 C 0.292 3.708 9 O -0.410 6.410 10 N -0.327 5.327 11 C 0.127 3.873 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.028 3.972 21 C -0.220 4.220 22 C -0.215 4.215 23 C -0.125 4.125 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.849 4.730 14.770 16.954 hybrid contribution 1.098 0.279 -0.502 1.240 sum -5.750 5.009 14.268 16.178 Atomic orbital electron populations 1.20759 0.91498 1.02277 1.02278 1.19815 0.95800 0.93174 1.00193 1.20925 0.94261 0.97194 1.02215 1.21032 0.94257 0.97746 1.00414 1.20972 0.99770 0.92015 1.00030 1.19358 0.93477 0.93979 0.98185 1.20790 1.01368 0.95494 0.97001 1.20160 0.79048 0.81527 0.90016 1.90695 1.51297 1.52890 1.46078 1.48334 1.54242 1.21259 1.08870 1.19216 0.97104 0.95339 0.75604 1.21441 1.04595 1.31313 0.98241 0.92435 1.24923 0.97457 0.95314 0.96487 1.69931 1.37874 1.38135 1.07600 0.86561 0.83800 0.79451 0.78003 1.20711 1.21182 1.19971 1.20998 0.94943 0.91656 0.89626 1.22157 1.00353 0.96789 1.02689 1.22141 0.94646 1.01928 1.02781 1.20822 0.93448 0.97451 1.00744 0.91253 0.91752 0.91874 0.86563 0.86340 0.86338 0.88655 0.88826 0.94859 0.94171 0.92845 0.90753 0.91309 0.92309 0.92963 0.92788 0.93305 0.90077 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.09 -1.21 5.88 -104.62 -0.62 -1.82 16 3 C -0.13 -1.66 9.70 -39.58 -0.38 -2.05 16 4 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 5 C -0.11 -1.68 9.70 -39.58 -0.38 -2.06 16 6 C -0.05 -0.78 4.37 -104.63 -0.46 -1.24 16 7 C -0.11 -1.63 4.14 -29.04 -0.12 -1.75 16 8 C 0.51 10.63 7.67 -10.98 -0.08 10.54 16 9 O -0.53 -13.77 15.61 5.55 0.09 -13.68 16 10 N -0.59 -12.45 2.39 -167.47 -0.40 -12.85 16 11 C 0.25 6.38 4.59 -5.19 -0.02 6.36 16 12 C -0.52 -14.43 7.83 -34.44 -0.27 -14.70 16 13 H 0.06 1.61 7.63 -52.48 -0.40 1.21 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.13 2.13 3.17 -67.93 -0.22 1.91 16 21 C -0.16 -2.35 9.17 37.15 0.34 -2.01 16 22 C -0.16 -2.56 8.48 37.16 0.31 -2.25 16 23 C -0.11 -1.58 9.36 -39.58 -0.37 -1.95 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.10 1.27 7.73 -51.93 -0.40 0.87 16 31 H 0.09 1.18 7.73 -51.93 -0.40 0.78 16 32 H 0.03 0.87 6.42 -51.93 -0.33 0.54 16 33 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 0.98 5.77 -51.93 -0.30 0.68 16 36 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.57 6.93 -51.93 -0.36 1.21 16 42 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -33.31 345.44 -8.50 -41.81 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.71 Total: 0.67 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.40 Total: -12.16 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.34 Total: -38.78 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.31 -8.50 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052135922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.493 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds