Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.21284 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00199 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47105 * 90.00524 * 11 10 8 13 13 H 1.08003 * 119.99562 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00337 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99845 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99950 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47081 * 89.99978 * 16 14 12 18 18 H 1.48501 * 109.47010 * 210.00421 * 16 14 12 19 19 H 1.48504 * 109.47120 * 330.00441 * 16 14 12 20 20 C 1.46505 * 119.99970 * 0.02562 * 10 8 7 21 21 C 1.52991 * 109.47359 * 119.99396 * 20 10 8 22 22 C 1.52999 * 109.46700 * 239.99678 * 20 10 8 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 1.08997 * 109.47534 * 210.00678 * 11 10 8 33 33 H 1.08996 * 109.47366 * 330.00761 * 11 10 8 34 34 H 0.96997 * 119.99659 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46741 * 359.97438 * 20 10 8 36 36 H 1.09001 * 109.47460 * 60.00114 * 21 20 10 37 37 H 1.09000 * 109.47067 * 180.02562 * 21 20 10 38 38 H 1.09001 * 109.47094 * 299.99823 * 21 20 10 39 39 H 1.08996 * 109.47543 * 59.99957 * 22 20 10 40 40 H 1.09005 * 109.47064 * 179.97438 * 22 20 10 41 41 H 1.09001 * 109.47027 * 299.99217 * 22 20 10 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1916 -2.2543 -2.3432 10 7 5.2482 -4.0844 -1.6677 11 6 5.4918 -4.5075 -3.0489 12 6 6.8056 -3.9418 -3.5233 13 1 7.3998 -3.3287 -2.8618 14 6 7.2495 -4.2076 -4.8013 15 7 6.5262 -4.9546 -5.6065 16 14 8.8784 -3.5069 -5.3889 17 1 9.9702 -4.4640 -5.0775 18 1 8.8202 -3.2822 -6.8557 19 1 9.1396 -2.2172 -4.7006 20 6 5.7241 -4.9090 -0.5542 21 6 5.0824 -6.2954 -0.6356 22 6 7.2459 -5.0457 -0.6351 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 5.5273 -5.5960 -3.0947 33 1 4.6875 -4.1431 -3.6879 34 1 6.8384 -5.1413 -6.5057 35 1 5.4516 -4.4370 0.3897 36 1 5.3552 -6.7673 -1.5796 37 1 5.4362 -6.9087 0.1931 38 1 3.9983 -6.1980 -0.5780 39 1 7.7030 -4.0580 -0.5771 40 1 7.6001 -5.6588 0.1936 41 1 7.5186 -5.5175 -1.5791 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052135922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -45.209229 kcal Electronic energy + Delta-G solvation = -21416.123532 eV Core-core repulsion = 18359.689344 eV Total energy + Delta-G solvation = -3056.434188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10799 -39.87456 -37.50934 -35.01129 -34.30761 -32.88457 -32.39075 -30.09521 -28.27582 -27.90355 -27.56506 -24.89625 -23.09912 -22.68699 -21.63650 -19.45865 -18.59685 -18.16610 -17.39875 -16.88158 -16.65768 -16.20147 -15.67139 -15.47616 -14.88921 -14.81901 -14.41657 -14.39518 -14.02900 -13.93928 -13.81375 -13.34684 -13.24460 -13.13610 -12.87325 -12.81417 -12.70617 -12.65834 -12.51382 -12.20513 -12.10099 -11.91331 -11.82412 -11.61499 -11.49786 -10.61437 -10.59705 -9.64376 -9.43908 -9.38742 -8.19181 -6.30919 0.45917 0.53489 1.34533 1.37561 1.47280 1.88210 2.31957 2.45659 2.92301 3.10571 3.71141 3.89159 3.92927 4.04979 4.10484 4.26271 4.30553 4.40767 4.43692 4.49694 4.62405 4.65286 4.82614 4.84505 4.87045 4.89468 4.99949 5.03567 5.06976 5.13916 5.20714 5.26830 5.33512 5.45306 5.58795 5.59291 5.65657 5.69894 5.73898 5.91893 6.12556 6.18337 6.75489 6.87255 7.32798 7.55026 8.88144 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.004913 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.530349 B = 5697.967900 C = 6338.336357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.072 4.072 7 C -0.091 4.091 8 C 0.497 3.503 9 O -0.593 6.593 10 N -0.598 5.598 11 C 0.265 3.735 12 C -0.524 4.524 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.124 3.876 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.125 4.125 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.025 0.975 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.118 0.882 36 H 0.036 0.964 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 5.025 18.002 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.130 4.130 8 C 0.286 3.714 9 O -0.474 6.474 10 N -0.329 5.329 11 C 0.143 3.857 12 C -0.562 4.562 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.199 1.199 20 C 0.021 3.979 21 C -0.214 4.214 22 C -0.210 4.210 23 C -0.143 4.143 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.161 0.839 28 H 0.158 0.842 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.043 0.957 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.055 0.945 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.572 5.265 17.353 19.289 hybrid contribution 0.957 0.116 -1.264 1.590 sum -5.615 5.381 16.089 17.870 Atomic orbital electron populations 1.20811 0.89315 1.03890 1.02619 1.20246 0.97579 0.92900 0.99117 1.21324 0.94276 0.98302 1.01165 1.21368 0.94929 0.98151 0.99721 1.21190 1.00126 0.92763 1.01025 1.19524 0.94116 0.94239 0.99385 1.20753 1.03211 0.96286 0.92780 1.21219 0.77580 0.80533 0.92041 1.90656 1.53595 1.54640 1.48537 1.48381 1.54278 1.22130 1.08159 1.18614 0.94539 0.94348 0.78155 1.21660 1.05122 1.30980 0.98484 0.92859 1.25802 1.01131 0.95651 0.96698 1.70056 1.39730 1.39403 1.07988 0.85519 0.79786 0.78857 0.77293 1.18828 1.20937 1.19916 1.21446 0.94890 0.92179 0.89377 1.22122 1.00702 0.96045 1.02574 1.22083 0.94799 1.01724 1.02400 1.21081 0.93453 0.98531 1.01248 0.91394 0.90714 0.89800 0.83866 0.84208 0.86272 0.86219 0.85554 0.95714 0.99345 0.92669 0.86460 0.94482 0.88400 0.92434 0.93772 0.89119 0.93938 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.30 16 2 C -0.10 -2.50 5.88 -19.87 -0.12 -2.61 16 3 C -0.13 -3.21 9.70 22.27 0.22 -3.00 16 4 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 5 C -0.13 -3.98 9.70 22.27 0.22 -3.77 16 6 C -0.07 -2.22 4.37 -19.87 -0.09 -2.31 16 7 C -0.09 -2.62 4.14 29.10 0.12 -2.50 16 8 C 0.50 21.10 7.67 87.66 0.67 21.77 16 9 O -0.59 -32.01 15.61 -3.04 -0.05 -32.05 16 10 N -0.60 -25.38 2.39 -802.15 -1.91 -27.30 16 11 C 0.26 14.43 4.59 85.63 0.39 14.82 16 12 C -0.52 -30.25 7.83 25.60 0.20 -30.05 16 13 H 0.05 3.05 7.63 -2.91 -0.02 3.03 16 14 C 0.01 0.32 5.46 84.66 0.46 0.78 16 15 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 16 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 17 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 20 C 0.12 3.75 3.17 44.99 0.14 3.89 16 21 C -0.16 -4.26 9.17 71.98 0.66 -3.60 16 22 C -0.15 -4.73 8.48 71.98 0.61 -4.12 16 23 C -0.13 -3.60 9.36 22.27 0.21 -3.39 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.08 1.18 8.09 -2.38 -0.02 1.16 16 27 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.12 2.86 7.73 -2.38 -0.02 2.84 16 31 H 0.13 2.78 7.73 -2.39 -0.02 2.76 16 32 H 0.02 1.38 6.42 -2.39 -0.02 1.36 16 33 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.12 2.60 5.77 -2.39 -0.01 2.58 16 36 H 0.04 1.23 6.66 -2.39 -0.02 1.22 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.04 1.64 6.93 -2.39 -0.02 1.63 16 42 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -77.23 345.44 5.97 -71.26 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.98 Total: 15.73 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.64 Total: -18.39 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -1.63 Total: -84.34 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -77.23 5.97 -71.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052135922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.053 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds