Wall clock time and date at job start Mon Mar 30 2020 01:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00504 * 2 1 4 4 H 1.48496 * 109.47550 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47038 * 300.00266 * 3 2 1 6 6 H 1.48506 * 109.47116 * 59.99967 * 3 2 1 7 7 C 1.37878 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99961 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47068 * 185.08488 * 9 7 2 11 11 C 1.46900 * 110.99860 * 193.20623 * 10 9 7 12 12 C 1.50696 * 109.47076 * 157.96589 * 11 10 9 13 13 C 1.38243 * 120.00225 * 269.73033 * 12 11 10 14 14 C 1.38234 * 119.99674 * 179.74384 * 13 12 11 15 15 C 1.38235 * 120.00378 * 0.52746 * 14 13 12 16 16 C 1.38233 * 119.99543 * 359.74561 * 15 14 13 17 17 C 1.38233 * 120.00488 * 359.97438 * 16 15 14 18 18 C 1.46893 * 110.99752 * 69.25361 * 10 9 7 19 19 C 1.53003 * 109.47634 * 53.32779 * 18 10 9 20 20 H 1.09000 * 110.66864 * 303.83823 * 19 18 10 21 21 C 1.54984 * 110.62083 * 180.87035 * 19 18 10 22 22 C 1.54810 * 102.09268 * 204.47512 * 21 19 18 23 23 C 1.54095 * 104.18906 * 20.88156 * 22 21 19 24 24 O 1.43750 * 107.29047 * 2.03000 * 23 22 21 25 25 H 0.96997 * 120.00011 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46863 * 65.08756 * 9 7 2 27 27 H 1.08999 * 109.47420 * 305.08492 * 9 7 2 28 28 H 1.08992 * 109.47366 * 277.96793 * 11 10 9 29 29 H 1.08998 * 109.47054 * 37.96972 * 11 10 9 30 30 H 1.08001 * 119.99794 * 359.97438 * 13 12 11 31 31 H 1.07999 * 119.99326 * 180.29391 * 14 13 12 32 32 H 1.07996 * 120.00180 * 179.76828 * 15 14 13 33 33 H 1.08004 * 119.99639 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.00268 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.47596 * 293.32760 * 18 10 9 36 36 H 1.09008 * 109.47120 * 173.32717 * 18 10 9 37 37 H 1.09007 * 110.90576 * 86.28029 * 21 19 18 38 38 H 1.09003 * 110.94230 * 322.68950 * 21 19 18 39 39 H 1.09003 * 110.48754 * 262.20352 * 22 21 19 40 40 H 1.09000 * 110.60358 * 139.61787 * 22 21 19 41 41 H 1.09002 * 109.88100 * 242.60575 * 23 22 21 42 42 H 1.08996 * 109.87855 * 121.45246 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2008 -3.6130 0.1248 11 6 1.5518 -4.8947 -0.1816 12 6 2.5974 -5.9056 -0.5760 13 6 2.9607 -6.0426 -1.9028 14 6 3.9237 -6.9662 -2.2639 15 6 4.5156 -7.7605 -1.2997 16 6 4.1482 -7.6275 0.0262 17 6 3.1894 -6.6999 0.3881 18 6 2.8119 -3.6384 1.4604 19 6 1.7126 -3.6386 2.5245 20 1 1.0519 -2.7814 2.3953 21 6 2.3292 -3.6432 3.9464 22 6 1.1930 -4.2700 4.7906 23 6 0.3297 -5.0247 3.7612 24 8 0.9615 -4.8708 2.4791 25 1 -0.4850 0.8400 -0.0004 26 1 0.6939 -2.5980 -0.9301 27 1 0.5580 -2.5179 0.8429 28 1 1.0163 -5.2504 0.6986 29 1 0.8494 -4.7588 -1.0039 30 1 2.4948 -5.4253 -2.6567 31 1 4.2109 -7.0698 -3.2998 32 1 5.2653 -8.4847 -1.5823 33 1 4.6110 -8.2478 0.7796 34 1 2.9027 -6.5956 1.4242 35 1 3.4415 -2.7579 1.5887 36 1 3.4191 -4.5376 1.5651 37 1 2.5467 -2.6283 4.2793 38 1 3.2258 -4.2622 3.9802 39 1 0.6085 -3.4917 5.2814 40 1 1.6000 -4.9621 5.5279 41 1 -0.6728 -4.5977 3.7340 42 1 0.2778 -6.0811 4.0244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052865400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:37 Heat of formation + Delta-G solvation = -14.802455 kcal Electronic energy + Delta-G solvation = -21939.803610 eV Core-core repulsion = 18884.687959 eV Total energy + Delta-G solvation = -3055.115651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.53006 -38.65369 -36.15812 -32.69004 -31.90280 -31.23890 -30.53486 -29.39994 -27.02408 -25.66802 -23.68445 -22.27715 -21.95911 -21.09744 -20.82536 -19.44258 -16.58261 -16.39633 -16.10076 -15.56999 -15.13874 -14.83091 -14.58360 -14.47239 -14.04717 -13.71540 -13.21290 -13.03111 -12.88423 -12.26707 -12.17302 -12.14930 -11.59521 -11.45030 -11.21103 -11.06703 -10.97495 -10.77864 -10.76932 -10.61097 -10.43273 -10.32587 -10.19771 -9.80699 -9.20419 -9.12762 -8.54589 -8.44275 -8.30847 -7.05867 -6.01696 -4.02989 1.75096 1.77095 3.30031 3.38184 3.43075 4.10060 4.23717 4.44377 4.84626 4.99647 5.15316 5.20577 5.23609 5.28995 5.33151 5.39757 5.48139 5.55681 5.64610 5.82853 5.88158 5.90862 5.93672 5.97990 6.05717 6.12156 6.18394 6.27507 6.35977 6.43798 6.47942 6.72118 6.79476 6.82697 6.84534 7.13079 7.33468 7.35270 7.40452 7.46659 7.84558 8.13432 8.24384 8.58506 9.06502 9.61465 11.08401 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.006545 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.371700 B = 4276.957405 C = 5745.768313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.186 3.814 10 N -0.525 5.525 11 C 0.069 3.931 12 C -0.051 4.051 13 C -0.104 4.104 14 C -0.126 4.126 15 C -0.135 4.135 16 C -0.128 4.128 17 C -0.112 4.112 18 C 0.076 3.924 19 C 0.038 3.962 20 H 0.092 0.908 21 C -0.146 4.146 22 C -0.154 4.154 23 C 0.042 3.958 24 O -0.369 6.369 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.006 0.994 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -12.781 5.208 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.062 3.938 10 N -0.248 5.248 11 C -0.058 4.058 12 C -0.052 4.052 13 C -0.123 4.123 14 C -0.144 4.144 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.131 4.131 18 C -0.054 4.054 19 C -0.020 4.020 20 H 0.109 0.891 21 C -0.185 4.185 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.289 6.289 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.024 0.976 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.672 -12.704 4.656 14.314 hybrid contribution -0.264 1.057 0.814 1.360 sum 4.408 -11.647 5.470 13.602 Atomic orbital electron populations 1.69968 1.05998 1.26549 1.51320 1.24972 0.94810 0.99169 0.95611 0.86507 0.80175 0.83672 0.77478 1.19664 1.21063 1.21207 1.21216 0.93548 0.89867 1.49582 0.91904 1.19879 0.90227 0.87252 0.96465 1.62226 1.35188 1.02226 1.25116 1.21458 0.93313 0.89522 1.01486 1.20055 0.96944 0.95260 0.92946 1.21102 0.97379 0.97577 0.96243 1.21072 0.97457 0.96846 0.98987 1.20993 1.00649 1.00272 0.93433 1.21046 0.98430 0.99107 0.95996 1.21132 0.96727 0.95815 0.99423 1.22195 0.94927 1.01849 0.86383 1.24218 0.94700 0.87958 0.95138 0.89059 1.23105 0.98170 1.01497 0.95716 1.22884 0.97678 1.00007 0.98589 1.23106 0.96195 0.99862 0.84283 1.88853 1.66696 1.41896 1.31467 0.93062 0.95779 0.97586 0.90428 0.91479 0.86231 0.86742 0.86969 0.86898 0.86136 0.89330 0.91878 0.90411 0.91034 0.91115 0.91207 0.92971 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.50 -13.82 8.56 -34.44 -0.29 -14.12 16 8 H 0.06 1.73 7.50 -52.48 -0.39 1.34 16 9 C 0.19 4.76 4.42 -4.97 -0.02 4.74 16 10 N -0.53 -11.33 4.58 -237.51 -1.09 -12.42 16 11 C 0.07 1.33 5.04 -4.98 -0.03 1.31 16 12 C -0.05 -0.88 5.20 -104.62 -0.54 -1.43 16 13 C -0.10 -1.69 9.70 -39.58 -0.38 -2.07 16 14 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 15 C -0.14 -1.78 10.05 -39.58 -0.40 -2.18 16 16 C -0.13 -1.74 10.05 -39.59 -0.40 -2.14 16 17 C -0.11 -1.75 8.38 -39.58 -0.33 -2.08 16 18 C 0.08 1.45 4.94 -3.83 -0.02 1.43 16 19 C 0.04 0.69 2.85 -25.68 -0.07 0.61 16 20 H 0.09 1.98 5.99 -51.93 -0.31 1.66 16 21 C -0.15 -2.10 6.59 -24.73 -0.16 -2.27 16 22 C -0.15 -1.93 7.01 -25.21 -0.18 -2.10 16 23 C 0.04 0.59 7.70 37.73 0.29 0.88 16 24 O -0.37 -6.39 8.05 -35.23 -0.28 -6.67 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.67 7.73 -51.93 -0.40 0.27 16 27 H 0.01 0.17 5.61 -51.93 -0.29 -0.12 16 28 H 0.08 1.50 4.47 -51.93 -0.23 1.27 16 29 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 30 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.12 1.84 7.57 -52.48 -0.40 1.44 16 35 H 0.09 1.79 7.38 -51.93 -0.38 1.41 16 36 H 0.06 1.12 5.92 -51.92 -0.31 0.81 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -29.42 331.80 -10.16 -39.58 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.47 Total: 3.78 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -3.03 Total: -20.13 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.35 Total: -37.95 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.28 Total: -6.67 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.42 -10.16 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052865400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.779 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds