Wall clock time and date at job start Mon Mar 30 2020 01:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00504 * 2 1 4 4 H 1.48496 * 109.47550 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47038 * 300.00266 * 3 2 1 6 6 H 1.48506 * 109.47116 * 59.99967 * 3 2 1 7 7 C 1.37878 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99961 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47068 * 185.08488 * 9 7 2 11 11 C 1.46900 * 110.99860 * 193.20623 * 10 9 7 12 12 C 1.50696 * 109.47076 * 157.96589 * 11 10 9 13 13 C 1.38243 * 120.00225 * 269.73033 * 12 11 10 14 14 C 1.38234 * 119.99674 * 179.74384 * 13 12 11 15 15 C 1.38235 * 120.00378 * 0.52746 * 14 13 12 16 16 C 1.38233 * 119.99543 * 359.74561 * 15 14 13 17 17 C 1.38233 * 120.00488 * 359.97438 * 16 15 14 18 18 C 1.46893 * 110.99752 * 69.25361 * 10 9 7 19 19 C 1.53003 * 109.47634 * 53.32779 * 18 10 9 20 20 H 1.09000 * 110.66864 * 303.83823 * 19 18 10 21 21 C 1.54984 * 110.62083 * 180.87035 * 19 18 10 22 22 C 1.54810 * 102.09268 * 204.47512 * 21 19 18 23 23 C 1.54095 * 104.18906 * 20.88156 * 22 21 19 24 24 O 1.43750 * 107.29047 * 2.03000 * 23 22 21 25 25 H 0.96997 * 120.00011 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46863 * 65.08756 * 9 7 2 27 27 H 1.08999 * 109.47420 * 305.08492 * 9 7 2 28 28 H 1.08992 * 109.47366 * 277.96793 * 11 10 9 29 29 H 1.08998 * 109.47054 * 37.96972 * 11 10 9 30 30 H 1.08001 * 119.99794 * 359.97438 * 13 12 11 31 31 H 1.07999 * 119.99326 * 180.29391 * 14 13 12 32 32 H 1.07996 * 120.00180 * 179.76828 * 15 14 13 33 33 H 1.08004 * 119.99639 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.00268 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.47596 * 293.32760 * 18 10 9 36 36 H 1.09008 * 109.47120 * 173.32717 * 18 10 9 37 37 H 1.09007 * 110.90576 * 86.28029 * 21 19 18 38 38 H 1.09003 * 110.94230 * 322.68950 * 21 19 18 39 39 H 1.09003 * 110.48754 * 262.20352 * 22 21 19 40 40 H 1.09000 * 110.60358 * 139.61787 * 22 21 19 41 41 H 1.09002 * 109.88100 * 242.60575 * 23 22 21 42 42 H 1.08996 * 109.87855 * 121.45246 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2008 -3.6130 0.1248 11 6 1.5518 -4.8947 -0.1816 12 6 2.5974 -5.9056 -0.5760 13 6 2.9607 -6.0426 -1.9028 14 6 3.9237 -6.9662 -2.2639 15 6 4.5156 -7.7605 -1.2997 16 6 4.1482 -7.6275 0.0262 17 6 3.1894 -6.6999 0.3881 18 6 2.8119 -3.6384 1.4604 19 6 1.7126 -3.6386 2.5245 20 1 1.0519 -2.7814 2.3953 21 6 2.3292 -3.6432 3.9464 22 6 1.1930 -4.2700 4.7906 23 6 0.3297 -5.0247 3.7612 24 8 0.9615 -4.8708 2.4791 25 1 -0.4850 0.8400 -0.0004 26 1 0.6939 -2.5980 -0.9301 27 1 0.5580 -2.5179 0.8429 28 1 1.0163 -5.2504 0.6986 29 1 0.8494 -4.7588 -1.0039 30 1 2.4948 -5.4253 -2.6567 31 1 4.2109 -7.0698 -3.2998 32 1 5.2653 -8.4847 -1.5823 33 1 4.6110 -8.2478 0.7796 34 1 2.9027 -6.5956 1.4242 35 1 3.4415 -2.7579 1.5887 36 1 3.4191 -4.5376 1.5651 37 1 2.5467 -2.6283 4.2793 38 1 3.2258 -4.2622 3.9802 39 1 0.6085 -3.4917 5.2814 40 1 1.6000 -4.9621 5.5279 41 1 -0.6728 -4.5977 3.7340 42 1 0.2778 -6.0811 4.0244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052865400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:37 Heat of formation + Delta-G solvation = -31.784436 kcal Electronic energy + Delta-G solvation = -21940.540004 eV Core-core repulsion = 18884.687959 eV Total energy + Delta-G solvation = -3055.852045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89929 -39.84265 -37.74918 -34.75008 -33.17478 -32.53962 -31.68874 -30.86921 -28.89816 -27.05338 -25.47486 -23.66063 -23.26832 -22.25274 -22.15061 -21.03067 -18.44788 -17.77197 -17.49684 -16.90006 -16.85982 -16.12901 -16.05898 -15.78734 -15.55439 -15.30257 -14.55152 -14.35660 -14.12571 -13.88897 -13.55311 -13.46107 -13.19095 -12.88863 -12.81762 -12.60589 -12.56154 -12.35330 -12.24539 -12.06381 -11.98722 -11.67906 -11.61551 -11.41472 -11.16738 -10.62872 -10.50708 -9.68683 -9.53900 -8.81470 -8.17675 -6.28126 0.57930 0.62660 1.39470 1.40992 1.54201 2.40537 2.83271 3.01923 3.13954 3.60572 3.72000 3.87507 3.98648 4.08142 4.13310 4.23179 4.29893 4.32206 4.39444 4.51791 4.53849 4.69842 4.78318 4.79800 4.85162 4.88700 4.92994 4.99092 5.07625 5.18659 5.21892 5.25587 5.29300 5.33627 5.43824 5.67475 5.71387 5.71559 5.91951 6.03945 6.09644 6.25567 6.40974 6.66204 6.89284 7.41617 8.92364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.006545 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.371700 B = 4276.957405 C = 5745.768313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.205 3.795 10 N -0.534 5.534 11 C 0.076 3.924 12 C -0.074 4.074 13 C -0.126 4.126 14 C -0.126 4.126 15 C -0.129 4.129 16 C -0.124 4.124 17 C -0.119 4.119 18 C 0.080 3.920 19 C 0.043 3.957 20 H 0.044 0.956 21 C -0.141 4.141 22 C -0.145 4.145 23 C 0.033 3.967 24 O -0.385 6.385 25 H 0.263 0.737 26 H -0.011 1.011 27 H -0.016 1.016 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.918 -14.352 6.421 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.079 3.921 10 N -0.256 5.256 11 C -0.051 4.051 12 C -0.075 4.075 13 C -0.144 4.144 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.142 4.142 17 C -0.138 4.138 18 C -0.049 4.049 19 C -0.016 4.016 20 H 0.062 0.938 21 C -0.179 4.179 22 C -0.182 4.182 23 C -0.044 4.044 24 O -0.305 6.305 25 H 0.072 0.928 26 H 0.007 0.993 27 H 0.002 0.998 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.116 -14.295 5.878 17.016 hybrid contribution -1.043 1.427 0.409 1.815 sum 6.073 -12.868 6.287 15.556 Atomic orbital electron populations 1.70099 1.07672 1.27638 1.52079 1.25848 0.95638 1.02910 0.94958 0.85402 0.79055 0.78902 0.77689 1.18770 1.20661 1.20285 1.21443 0.93431 0.90928 1.49576 0.92218 1.19479 0.90233 0.88678 0.93669 1.62145 1.34096 1.02225 1.27100 1.21359 0.94010 0.89088 1.00611 1.19881 0.97628 0.95900 0.94064 1.21168 0.98729 0.98817 0.95719 1.21368 0.96373 0.95924 1.00715 1.21437 1.00391 0.99919 0.92906 1.21409 0.97264 0.98313 0.97166 1.21179 0.97354 0.96253 0.99006 1.22144 0.95174 1.01990 0.85555 1.23868 0.93651 0.86812 0.97239 0.93779 1.23080 0.99341 1.02302 0.93155 1.22873 0.96601 1.00422 0.98340 1.23358 0.95852 1.01789 0.83355 1.88812 1.66999 1.41003 1.33722 0.92828 0.99318 0.99801 0.90594 0.93575 0.87386 0.84333 0.83449 0.83752 0.86057 0.90747 0.89891 0.90325 0.89126 0.90810 0.88059 0.93872 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.00 0.24 5.46 84.66 0.46 0.71 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.52 -29.53 8.56 25.60 0.22 -29.31 16 8 H 0.06 3.39 7.50 -2.91 -0.02 3.37 16 9 C 0.21 11.25 4.42 85.56 0.38 11.63 16 10 N -0.53 -24.32 4.58 -905.35 -4.15 -28.46 16 11 C 0.08 3.11 5.04 85.56 0.43 3.54 16 12 C -0.07 -2.58 5.20 -19.87 -0.10 -2.68 16 13 C -0.13 -4.10 9.70 22.27 0.22 -3.88 16 14 C -0.13 -3.27 10.05 22.27 0.22 -3.04 16 15 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 16 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 17 C -0.12 -3.54 8.38 22.27 0.19 -3.35 16 18 C 0.08 3.15 4.94 86.31 0.43 3.58 16 19 C 0.04 1.60 2.85 31.27 0.09 1.68 16 20 H 0.04 2.06 5.99 -2.39 -0.01 2.04 16 21 C -0.14 -3.87 6.59 31.89 0.21 -3.66 16 22 C -0.14 -3.32 7.01 31.58 0.22 -3.10 16 23 C 0.03 0.88 7.70 72.35 0.56 1.44 16 24 O -0.38 -13.54 8.05 -148.98 -1.20 -14.74 16 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 26 H -0.01 -0.68 7.73 -2.38 -0.02 -0.70 16 27 H -0.02 -0.91 5.61 -2.39 -0.01 -0.93 16 28 H 0.08 3.11 4.47 -2.40 -0.01 3.10 16 29 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 30 H 0.11 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.12 3.51 7.57 -2.91 -0.02 3.49 16 35 H 0.07 3.10 7.38 -2.39 -0.02 3.08 16 36 H 0.08 2.92 5.92 -2.38 -0.01 2.91 16 37 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.09 2.16 8.06 -2.39 -0.02 2.14 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -66.71 331.80 1.92 -64.80 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.99 Total: 20.03 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 3.96 Total: -31.86 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.86 Total: -84.86 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.20 Total: -14.74 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.71 1.92 -64.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052865400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.011 kcal (2) G-P(sol) polarization free energy of solvation -66.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds